Wall clock time and date at job start Tue Mar 31 2020 05:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.68446 * 2 1 4 4 C 1.52960 * 109.57763 * 120.32693 * 2 1 3 5 5 C 1.53168 * 109.11190 * 170.60157 * 4 2 1 6 6 C 1.53063 * 108.95132 * 289.57694 * 5 4 2 7 7 C 1.51874 * 108.79656 * 50.02728 * 6 5 4 8 8 S 1.75558 * 124.37704 * 163.37327 * 7 6 5 9 9 C 1.75668 * 92.45217 * 179.97438 * 8 7 6 10 10 N 1.34775 * 130.67309 * 179.97438 * 9 8 7 11 11 C 1.31116 * 121.55381 * 180.02562 * 10 9 8 12 12 S 1.76203 * 119.18921 * 179.97438 * 11 10 9 13 13 C 1.76201 * 100.00095 * 359.97438 * 12 11 10 14 14 H 1.07991 * 119.99865 * 359.97438 * 13 12 11 15 15 C 1.38736 * 119.99696 * 179.97438 * 13 12 11 16 16 N 1.31567 * 119.99832 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99756 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47097 * 179.97438 * 17 15 13 19 19 H 1.48495 * 109.47151 * 300.00242 * 17 15 13 20 20 H 1.48500 * 109.47137 * 59.99969 * 17 15 13 21 21 N 1.36611 * 121.61260 * 0.24843 * 11 10 9 22 22 N 1.36600 * 119.87329 * 179.74533 * 21 11 10 23 23 C 1.34725 * 120.24983 * 359.47316 * 21 11 10 24 24 O 1.21888 * 120.61581 * 180.27931 * 23 21 11 25 25 C 1.38993 * 109.60212 * 0.02562 * 9 8 7 26 26 C 1.33537 * 124.33498 * 343.35597 * 7 6 5 27 27 H 1.08997 * 109.47136 * 261.50817 * 1 2 3 28 28 H 1.09004 * 109.47379 * 21.50685 * 1 2 3 29 29 H 1.08995 * 109.47007 * 141.50479 * 1 2 3 30 30 H 1.09001 * 109.53431 * 50.70887 * 4 2 1 31 31 H 1.09005 * 109.59183 * 290.52168 * 4 2 1 32 32 H 1.09000 * 109.56408 * 169.73737 * 5 4 2 33 33 H 1.08999 * 109.64681 * 49.46799 * 5 4 2 34 34 H 1.09007 * 109.58056 * 290.23668 * 6 5 4 35 35 H 1.09000 * 109.69633 * 169.89376 * 6 5 4 36 36 H 0.96995 * 120.00582 * 359.97438 * 16 15 13 37 37 H 1.00907 * 111.00029 * 359.97438 * 22 21 11 38 38 H 1.00896 * 111.00323 * 123.94988 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8972 1.0264 0.0000 4 6 2.0425 -0.7277 1.2440 5 6 3.5559 -0.9287 1.1195 6 6 3.8312 -1.9710 0.0329 7 6 3.0555 -1.5919 -1.2166 8 16 3.3773 -2.2375 -2.8171 9 6 2.0843 -1.2935 -3.5403 10 7 1.6578 -1.2209 -4.8167 11 6 0.6606 -0.4436 -5.1638 12 16 0.1547 -0.3964 -6.8510 13 6 1.3008 -1.5399 -7.5462 14 1 2.0322 -2.0225 -6.9150 15 6 1.2635 -1.8203 -8.9044 16 7 0.3727 -1.2319 -9.6733 17 14 2.4791 -3.0321 -9.6416 18 1 2.2314 -3.1560 -11.1005 19 1 3.8633 -2.5453 -9.4135 20 1 2.3084 -4.3587 -8.9966 21 7 0.0078 0.3347 -4.2503 22 7 -1.0235 1.1354 -4.6519 23 6 0.3736 0.3113 -2.9539 24 8 -0.2075 0.9991 -2.1324 25 6 1.4600 -0.5304 -2.5606 26 6 2.0403 -0.7246 -1.2387 27 1 -0.3633 -0.1517 1.0164 28 1 -0.3634 0.9561 -0.3768 29 1 -0.3633 -0.8043 -0.6396 30 1 1.5517 -1.6974 1.3271 31 1 1.8258 -0.1323 2.1310 32 1 3.9570 -1.2786 2.0707 33 1 4.0298 0.0147 0.8486 34 1 3.5092 -2.9532 0.3789 35 1 4.8975 -1.9943 -0.1920 36 1 -0.2582 -0.6024 -9.2906 37 1 -1.1856 1.0460 -5.6438 38 1 -1.8624 0.9343 -4.1286 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019797064.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:56 Heat of formation + Delta-G solvation = 34.655346 kcal Electronic energy + Delta-G solvation = -24619.629529 eV Core-core repulsion = 21101.206638 eV Total energy + Delta-G solvation = -3518.422891 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 337.066 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.27093 -38.80751 -37.16541 -36.05259 -33.24060 -33.05405 -32.39627 -29.70982 -28.84285 -26.38570 -25.45451 -24.60070 -23.92611 -22.04745 -21.50859 -19.47405 -18.80832 -18.11203 -17.84219 -17.41175 -16.42700 -16.23075 -15.16496 -15.04946 -14.74437 -14.42062 -14.17087 -14.08160 -13.50959 -13.20177 -13.14159 -12.97459 -12.82488 -12.76569 -12.47477 -12.12181 -11.77563 -11.35370 -11.25959 -11.21748 -10.82692 -10.75373 -10.54336 -10.36742 -10.29905 -10.13434 -9.58042 -9.49167 -9.37095 -9.11358 -8.82760 -8.25693 -7.94113 -7.16977 -7.15931 -4.65606 0.59323 1.42005 1.85246 1.98504 2.20023 2.36783 2.55416 3.14397 3.19516 3.39335 3.61890 3.87331 4.33003 4.55317 4.73985 4.79822 4.80741 4.83948 4.96621 5.09380 5.14529 5.29750 5.47885 5.53871 5.64320 5.66934 5.78214 5.83827 5.88436 5.93003 6.12659 6.18079 6.29555 6.42808 6.50321 6.66345 6.71941 7.07995 7.24352 7.72880 7.99524 8.07571 8.38684 8.60722 10.22140 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.016671 B = 0.004088 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.204834 B = 6848.242602 C = 8431.575701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.025 4.025 3 H 0.080 0.920 4 C -0.115 4.115 5 C -0.116 4.116 6 C -0.036 4.036 7 C -0.226 4.226 8 S 0.156 5.844 9 C 0.124 3.876 10 N -0.499 5.499 11 C 0.328 3.672 12 S 0.117 5.883 13 C -0.601 4.601 14 H 0.114 0.886 15 C 0.045 3.955 16 N -0.866 5.866 17 Si 1.091 2.909 18 H -0.275 1.275 19 H -0.277 1.277 20 H -0.277 1.277 21 N -0.366 5.366 22 N -0.592 5.592 23 C 0.568 3.432 24 O -0.523 6.523 25 C -0.273 4.273 26 C -0.010 4.010 27 H 0.038 0.962 28 H 0.096 0.904 29 H 0.044 0.956 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.272 0.728 37 H 0.369 0.631 38 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.538 -0.665 15.058 15.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.045 4.045 3 H 0.098 0.902 4 C -0.152 4.152 5 C -0.155 4.155 6 C -0.075 4.075 7 C -0.343 4.343 8 S 0.419 5.581 9 C -0.118 4.118 10 N -0.230 5.230 11 C -0.042 4.042 12 S 0.358 5.642 13 C -0.749 4.749 14 H 0.132 0.868 15 C -0.167 4.167 16 N -0.498 5.498 17 Si 0.914 3.086 18 H -0.200 1.200 19 H -0.202 1.202 20 H -0.203 1.203 21 N -0.178 5.178 22 N -0.223 5.223 23 C 0.364 3.636 24 O -0.400 6.400 25 C -0.294 4.294 26 C -0.022 4.022 27 H 0.057 0.943 28 H 0.114 0.886 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.188 0.812 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.603 -1.221 12.639 13.199 hybrid contribution -1.428 0.573 2.443 2.887 sum 2.175 -0.649 15.081 15.251 Atomic orbital electron populations 1.22163 0.93396 1.04757 0.99300 1.20102 0.96641 0.97983 0.89817 0.90201 1.21705 0.95388 1.00854 0.97270 1.21575 0.96702 0.99292 0.97885 1.20233 0.98299 0.99071 0.89905 1.24153 1.04711 1.07165 0.98306 1.83816 1.31499 1.44790 0.97959 1.23726 0.98318 0.97062 0.92721 1.68578 1.15653 1.24161 1.14595 1.26217 0.91631 0.87611 0.98761 1.82786 1.41641 1.52176 0.87570 1.24399 1.21558 1.29906 0.99032 0.86792 1.26449 0.99245 0.98935 0.92066 1.70944 1.16033 1.24550 1.38314 0.83218 0.74437 0.74698 0.76256 1.19959 1.20235 1.20303 1.45398 1.27543 1.35814 1.09094 1.60220 1.05376 1.45187 1.11547 1.16511 0.84193 0.83594 0.79290 1.90752 1.57157 1.44538 1.47583 1.20295 1.04987 1.09378 0.94730 1.19884 0.93689 0.96136 0.92452 0.94335 0.88590 0.93657 0.91659 0.91492 0.91325 0.91482 0.90682 0.90779 0.91579 0.81160 0.82435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 7.81 37.16 0.29 -1.79 16 2 C -0.02 -0.35 2.82 -90.99 -0.26 -0.61 16 3 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16 4 C -0.11 -1.25 4.97 -26.67 -0.13 -1.38 16 5 C -0.12 -1.12 5.93 -26.61 -0.16 -1.28 16 6 C -0.04 -0.39 6.24 -27.27 -0.17 -0.56 16 7 C -0.23 -3.35 6.29 -35.37 -0.22 -3.57 16 8 S 0.16 2.55 23.19 -107.50 -2.49 0.06 16 9 C 0.12 2.52 7.67 -15.98 -0.12 2.40 16 10 N -0.50 -11.22 8.45 -11.52 -0.10 -11.31 16 11 C 0.33 7.06 7.86 -88.41 -0.69 6.37 16 12 S 0.12 2.56 18.58 -107.50 -2.00 0.56 16 13 C -0.60 -15.19 9.24 30.92 0.29 -14.90 16 14 H 0.11 2.97 6.52 -52.49 -0.34 2.63 16 15 C 0.04 1.13 5.49 -17.48 -0.10 1.03 16 16 N -0.87 -22.81 13.66 55.49 0.76 -22.05 16 17 Si 1.09 22.40 29.92 -169.99 -5.09 17.31 16 18 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 19 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 20 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 21 N -0.37 -7.20 3.50 -14.31 -0.05 -7.25 16 22 N -0.59 -9.74 9.93 60.35 0.60 -9.14 16 23 C 0.57 11.45 7.22 -14.46 -0.10 11.35 16 24 O -0.52 -10.44 12.05 5.02 0.06 -10.38 16 25 C -0.27 -5.33 5.65 -104.84 -0.59 -5.92 16 26 C -0.01 -0.17 5.37 -102.50 -0.55 -0.72 16 27 H 0.04 0.48 7.73 -51.93 -0.40 0.08 16 28 H 0.10 1.61 5.47 -52.42 -0.29 1.32 16 29 H 0.04 0.75 6.95 -51.93 -0.36 0.39 16 30 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.67 8.11 -51.93 -0.42 0.25 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.27 6.99 7.12 -40.82 -0.29 6.70 16 37 H 0.37 5.67 6.50 -175.94 -1.14 4.52 16 38 H 0.36 5.08 9.00 -181.37 -1.63 3.45 16 LS Contribution 329.35 15.07 4.96 4.96 Total: -1.00 -28.80 329.35 -12.07 -40.87 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -6.21 Total: 5.95 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -2.52 Total: -9.58 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: 1.21 Total: -49.76 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.06 Total: -10.38 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.09 Total: 17.31 kcal Atomic # 16 Polarization: 5.11 SS G_CDS: -4.49 Total: 0.62 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.80 -12.07 -40.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019797064.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.526 kcal (2) G-P(sol) polarization free energy of solvation -28.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds