Wall clock time and date at job start Tue Mar 31 2020 05:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38348 * 119.86263 * 2 1 4 4 C 1.37967 * 120.13691 * 179.97438 * 3 2 1 5 5 C 1.39510 * 119.86179 * 0.02562 * 4 3 2 6 6 C 1.48058 * 120.13388 * 179.97438 * 5 4 3 7 7 N 1.32218 * 120.53378 * 224.24533 * 6 5 4 8 8 N 1.28091 * 123.32882 * 180.02562 * 7 6 5 9 9 C 1.32314 * 123.35413 * 0.02562 * 8 7 6 10 10 S 1.76201 * 120.51489 * 180.02562 * 9 8 7 11 11 C 1.81004 * 99.99999 * 359.97438 * 10 9 8 12 12 C 1.50697 * 109.47120 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00009 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99920 * 179.97438 * 12 11 10 15 15 N 1.31509 * 119.99807 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99667 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47022 * 90.00652 * 16 14 12 18 18 H 1.48508 * 109.46674 * 210.00214 * 16 14 12 19 19 H 1.48497 * 109.47195 * 330.00277 * 16 14 12 20 20 C 1.41471 * 118.96730 * 0.02562 * 9 8 7 21 21 C 1.39838 * 122.70750 * 179.97438 * 20 9 8 22 22 C 1.36426 * 119.40471 * 180.02562 * 21 20 9 23 23 C 1.39226 * 121.01194 * 359.97438 * 22 21 20 24 24 C 1.36448 * 121.01225 * 0.02562 * 23 22 21 25 25 C 1.39775 * 119.40934 * 359.97438 * 24 23 22 26 26 C 1.39498 * 119.72472 * 0.24989 * 5 4 3 27 27 C 1.37970 * 119.86175 * 359.49275 * 26 5 4 28 28 H 1.09005 * 109.46920 * 90.00150 * 1 2 3 29 29 H 1.09000 * 109.47329 * 210.00097 * 1 2 3 30 30 H 1.09004 * 109.47163 * 330.00455 * 1 2 3 31 31 H 1.08001 * 119.93278 * 359.94908 * 3 2 1 32 32 H 1.08003 * 120.07427 * 180.02562 * 4 3 2 33 33 H 1.09009 * 109.47249 * 300.00121 * 11 10 9 34 34 H 1.09000 * 109.46942 * 60.00218 * 11 10 9 35 35 H 0.96998 * 119.99535 * 179.97438 * 15 14 12 36 36 H 1.08005 * 120.30020 * 0.05022 * 21 20 9 37 37 H 1.07997 * 119.50102 * 179.72300 * 22 21 20 38 38 H 1.08003 * 119.49562 * 179.97438 * 23 22 21 39 39 H 1.08007 * 120.29649 * 179.97438 * 24 23 22 40 40 H 1.08002 * 120.06871 * 179.72556 * 26 5 4 41 41 H 1.08002 * 119.93782 * 180.25148 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1998 0.0000 4 6 3.5756 1.2064 0.0005 5 6 4.2760 -0.0001 0.0005 6 6 5.7566 -0.0001 0.0005 7 7 6.4283 -0.8159 -0.7941 8 7 7.7077 -0.8609 -0.8373 9 6 8.4882 -0.0962 -0.0911 10 16 10.2417 -0.2200 -0.2119 11 6 10.3795 -1.5123 -1.4718 12 6 11.8344 -1.7939 -1.7454 13 1 12.5995 -1.2486 -1.2128 14 6 12.1889 -2.7484 -2.6752 15 7 11.2572 -3.4127 -3.3234 16 14 13.9924 -3.0969 -3.0149 17 1 14.4704 -4.1661 -2.1021 18 1 14.1542 -3.5394 -4.4233 19 1 14.7861 -1.8622 -2.7896 20 6 7.8929 0.8223 0.8052 21 6 8.6423 1.6669 1.6301 22 6 7.9979 2.5271 2.4703 23 6 6.6073 2.5766 2.5178 24 6 5.8475 1.7658 1.7258 25 6 6.4768 0.8729 0.8538 26 6 3.5756 -1.2065 -0.0053 27 6 2.1959 -1.1999 -0.0004 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8901 0.5138 31 1 1.6526 2.1332 -0.0008 32 1 4.1123 2.1436 0.0010 33 1 9.8948 -2.4211 -1.1147 34 1 9.8948 -1.1784 -2.3892 35 1 11.5066 -4.0839 -3.9778 36 1 9.7216 1.6387 1.6021 37 1 8.5751 3.1769 3.1113 38 1 6.1225 3.2668 3.1924 39 1 4.7695 1.8136 1.7724 40 1 4.1122 -2.1438 -0.0098 41 1 1.6524 -2.1332 -0.0008 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019898045.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:35 Heat of formation + Delta-G solvation = 83.106940 kcal Electronic energy + Delta-G solvation = -24495.283819 eV Core-core repulsion = 21044.777001 eV Total energy + Delta-G solvation = -3450.506818 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 336.099 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.17627 -39.26442 -37.86982 -34.50920 -33.20180 -32.11588 -31.59070 -31.12575 -30.27011 -28.59104 -27.24978 -24.80356 -24.17433 -23.11755 -22.73133 -22.29176 -21.13698 -18.37148 -18.14219 -17.34203 -16.73689 -16.17052 -15.48650 -15.41355 -14.94594 -14.78979 -14.69015 -14.47696 -14.14982 -13.94705 -13.60604 -13.38922 -13.09212 -12.60761 -12.56265 -12.40881 -12.36995 -12.27568 -12.13676 -11.76008 -11.49190 -11.19602 -11.06368 -10.96200 -10.70059 -10.63530 -10.08374 -9.73456 -9.54661 -9.37912 -9.11765 -9.06772 -8.86624 -8.67145 -8.37776 -6.94314 -6.19943 -4.28538 0.15883 0.75016 1.09102 1.27690 1.87010 2.07326 2.99941 3.24516 3.29129 3.30794 3.39991 3.55962 4.01436 4.13819 4.32317 4.51720 4.58244 4.65420 4.66709 4.71508 4.80910 4.87126 5.02451 5.11678 5.16106 5.19915 5.26771 5.33845 5.38372 5.53038 5.57528 5.67771 5.72961 5.83242 5.85743 5.93257 6.12754 6.24520 6.27629 6.38923 6.43131 6.48318 6.65724 6.81953 7.11145 7.23128 7.67456 7.92920 8.72442 9.12965 9.35185 10.90294 Molecular weight = 336.10amu Principal moments of inertia in cm(-1) A = 0.014641 B = 0.002883 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.999482 B = 9710.891065 C =11465.755158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.082 4.082 3 C -0.122 4.122 4 C -0.100 4.100 5 C -0.031 4.031 6 C 0.104 3.896 7 N -0.227 5.227 8 N -0.264 5.264 9 C 0.099 3.901 10 S -0.058 6.058 11 C 0.070 3.930 12 C -0.529 4.529 13 H 0.067 0.933 14 C 0.071 3.929 15 N -0.881 5.881 16 Si 0.906 3.094 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.271 1.271 20 C -0.067 4.067 21 C -0.076 4.076 22 C -0.112 4.112 23 C -0.099 4.099 24 C -0.106 4.106 25 C -0.049 4.049 26 C -0.078 4.078 27 C -0.121 4.121 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.267 0.733 36 H 0.143 0.857 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.140 0.860 40 H 0.130 0.870 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.280 12.134 11.973 24.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.083 4.083 3 C -0.140 4.140 4 C -0.120 4.120 5 C -0.033 4.033 6 C -0.056 4.056 7 N -0.060 5.060 8 N -0.104 5.104 9 C -0.164 4.164 10 S 0.184 5.816 11 C -0.077 4.077 12 C -0.569 4.569 13 H 0.085 0.915 14 C -0.135 4.135 15 N -0.517 5.517 16 Si 0.733 3.267 17 H -0.203 1.203 18 H -0.209 1.209 19 H -0.195 1.195 20 C -0.078 4.078 21 C -0.096 4.096 22 C -0.132 4.132 23 C -0.118 4.118 24 C -0.126 4.126 25 C -0.057 4.057 26 C -0.097 4.097 27 C -0.139 4.139 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.161 0.839 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.158 0.842 40 H 0.148 0.852 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.298 11.264 11.121 23.447 hybrid contribution 0.090 0.115 0.090 0.172 sum -17.208 11.379 11.211 23.479 Atomic orbital electron populations 1.20810 0.91177 1.02738 1.02410 1.20023 0.96100 0.93187 0.98973 1.20892 0.93590 0.97639 1.01915 1.21258 0.94170 0.97083 0.99462 1.18190 0.88934 0.93935 1.02209 1.21299 0.94026 0.94988 0.95266 1.72624 1.01951 1.16035 1.15405 1.73367 0.97622 1.19758 1.19603 1.25730 1.03245 0.93656 0.93736 1.85473 0.90766 1.51854 1.53505 1.21395 1.01337 0.92195 0.92727 1.20639 0.89655 1.22516 1.24108 0.91507 1.24953 0.98293 0.95154 0.95094 1.69984 1.32813 1.23838 1.25085 0.86362 0.83839 0.78814 0.77691 1.20270 1.20853 1.19541 1.18455 0.92954 0.98079 0.98285 1.21050 1.00718 0.93811 0.93996 1.21009 0.94605 0.98771 0.98794 1.21052 0.93975 0.98512 0.98257 1.21100 1.00675 0.95306 0.95510 1.18575 0.92593 0.97216 0.97353 1.21287 0.93906 0.97598 0.96889 1.20990 0.93807 0.97701 1.01369 0.91072 0.91499 0.91556 0.85737 0.85500 0.92739 0.92722 0.92297 0.83934 0.85072 0.85259 0.84224 0.85250 0.85678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.01 36.01 0.36 -0.37 16 2 C -0.08 -0.77 5.89 -104.54 -0.62 -1.38 16 3 C -0.12 -1.14 9.68 -39.64 -0.38 -1.52 16 4 C -0.10 -1.12 7.67 -39.21 -0.30 -1.42 16 5 C -0.03 -0.43 5.40 -104.93 -0.57 -0.99 16 6 C 0.10 1.78 6.50 -82.34 -0.53 1.24 16 7 N -0.23 -4.72 11.25 33.61 0.38 -4.35 16 8 N -0.26 -6.04 10.28 31.85 0.33 -5.71 16 9 C 0.10 2.06 7.12 -16.11 -0.11 1.95 16 10 S -0.06 -1.25 20.63 -107.50 -2.22 -3.46 16 11 C 0.07 1.87 4.63 36.00 0.17 2.04 16 12 C -0.53 -14.74 9.13 -34.44 -0.31 -15.05 16 13 H 0.07 1.80 7.71 -52.49 -0.40 1.39 16 14 C 0.07 1.98 5.46 -17.82 -0.10 1.88 16 15 N -0.88 -26.02 13.29 55.43 0.74 -25.28 16 16 Si 0.91 21.16 29.54 -169.99 -5.02 16.14 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 C -0.07 -1.15 5.76 -106.71 -0.61 -1.76 16 21 C -0.08 -1.05 9.45 -39.64 -0.37 -1.42 16 22 C -0.11 -1.18 9.95 -39.87 -0.40 -1.58 16 23 C -0.10 -0.96 9.95 -39.86 -0.40 -1.36 16 24 C -0.11 -1.24 8.52 -39.65 -0.34 -1.57 16 25 C -0.05 -0.77 5.72 -106.63 -0.61 -1.38 16 26 C -0.08 -1.01 9.68 -39.21 -0.38 -1.39 16 27 C -0.12 -1.26 9.68 -39.64 -0.38 -1.65 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 30 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 31 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 32 H 0.13 1.26 6.74 -52.48 -0.35 0.91 16 33 H 0.05 1.56 8.14 -51.91 -0.42 1.14 16 34 H 0.05 1.57 8.14 -51.92 -0.42 1.14 16 35 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.14 1.88 7.05 -52.48 -0.37 1.51 16 37 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 39 H 0.14 1.34 5.42 -52.48 -0.28 1.06 16 40 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 41 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 362.59 15.07 5.46 5.46 Total: -1.00 -32.39 362.59 -11.00 -43.38 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -4.77 Total: -0.44 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -5.89 Total: -25.74 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 1.44 Total: -35.35 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -1.25 SS G_CDS: -2.22 Total: -3.46 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.39 -11.00 -43.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019898045.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.491 kcal (2) G-P(sol) polarization free energy of solvation -32.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds