Wall clock time and date at job start Tue Mar 31 2020 05:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36006 * 116.99808 * 2 1 4 4 C 1.38145 * 119.99774 * 0.24864 * 3 2 1 5 5 C 1.39784 * 119.83979 * 180.31535 * 4 3 2 6 6 C 1.47420 * 120.07352 * 179.68361 * 5 4 3 7 7 S 1.71192 * 120.00526 * 313.90610 * 6 5 4 8 8 N 1.34780 * 119.99574 * 133.90608 * 6 5 4 9 9 C 1.47086 * 120.87845 * 183.30348 * 8 6 5 10 10 C 1.53696 * 108.27560 * 128.75701 * 9 8 6 11 11 N 1.46896 * 109.25952 * 54.08115 * 10 9 8 12 12 C 1.46895 * 111.00309 * 172.60961 * 11 10 9 13 13 C 1.50703 * 109.46834 * 294.30225 * 12 11 10 14 14 H 1.08003 * 120.00482 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99797 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99778 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00192 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.46937 * 89.99946 * 17 15 13 19 19 H 1.48500 * 109.46901 * 209.99858 * 17 15 13 20 20 H 1.48498 * 109.46969 * 330.00009 * 17 15 13 21 21 C 1.46904 * 111.26758 * 296.75646 * 11 10 9 22 22 C 1.47080 * 120.88252 * 3.57931 * 8 6 5 23 23 C 1.39761 * 119.84379 * 359.70781 * 5 4 3 24 24 C 1.37785 * 119.99626 * 359.97438 * 23 5 4 25 25 C 1.38827 * 120.16010 * 0.02562 * 24 23 5 26 26 O 1.35819 * 119.92653 * 179.97438 * 25 24 23 27 27 H 1.08993 * 109.46943 * 60.00566 * 1 2 3 28 28 H 1.09006 * 109.46668 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47270 * 299.99930 * 1 2 3 30 30 H 1.07994 * 120.08035 * 0.02562 * 4 3 2 31 31 H 1.09000 * 109.62309 * 248.52136 * 9 8 6 32 32 H 1.08997 * 109.62573 * 9.10307 * 9 8 6 33 33 H 1.09003 * 109.64786 * 294.07471 * 10 9 8 34 34 H 1.09001 * 109.41621 * 173.94742 * 10 9 8 35 35 H 1.09002 * 109.47512 * 54.29819 * 12 11 10 36 36 H 1.09002 * 109.47829 * 174.30147 * 12 11 10 37 37 H 0.96998 * 120.00006 * 179.97438 * 16 15 13 38 38 H 1.08995 * 109.49480 * 303.14333 * 21 11 10 39 39 H 1.09000 * 109.49209 * 183.06410 * 21 11 10 40 40 H 1.09000 * 109.62892 * 350.89788 * 22 8 6 41 41 H 1.09008 * 109.62494 * 111.47661 * 22 8 6 42 42 H 1.08001 * 120.00009 * 179.97438 * 23 5 4 43 43 H 1.07998 * 119.92138 * 179.97438 * 24 23 5 44 44 H 0.96702 * 114.00098 * 89.99326 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2939 2.3704 0.0052 5 6 1.9319 3.6141 -0.0015 6 6 1.1339 4.8537 -0.0030 7 16 -0.1977 5.0132 -1.0670 8 7 1.4528 5.8614 0.8332 9 6 0.6277 7.0772 0.8994 10 6 0.2802 7.3443 2.3725 11 7 1.5182 7.3908 3.1617 12 6 1.2475 7.8164 4.5414 13 6 0.7602 9.2425 4.5406 14 1 0.6619 9.7792 3.6086 15 6 0.4399 9.8621 5.7300 16 7 0.0151 11.1068 5.7294 17 14 0.6092 8.9338 7.3421 18 1 1.9741 9.1383 7.8901 19 1 -0.3948 9.4397 8.3124 20 1 0.3827 7.4854 7.1053 21 6 2.2149 6.0977 3.1369 22 6 2.6384 5.7770 1.6995 23 6 3.3280 3.6797 -0.0072 24 6 4.0720 2.5200 -0.0057 25 6 3.4384 1.2848 0.0009 26 8 4.1766 0.1447 0.0018 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.2154 2.3153 0.0097 31 1 1.1856 7.9208 0.4929 32 1 -0.2879 6.9299 0.3266 33 1 -0.3609 6.5468 2.7482 34 1 -0.2398 8.2987 2.4549 35 1 0.4841 7.1719 4.9773 36 1 2.1623 7.7453 5.1298 37 1 -0.2106 11.5426 6.5660 38 1 1.5470 5.3176 3.5019 39 1 3.0982 6.1482 3.7736 40 1 3.0528 4.7697 1.6560 41 1 3.3859 6.4981 1.3684 42 1 3.8235 4.6393 -0.0128 43 1 5.1507 2.5721 -0.0106 44 1 4.3939 -0.1825 0.8855 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020290645.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:03 Heat of formation + Delta-G solvation = -7.427121 kcal Electronic energy + Delta-G solvation = -26711.644576 eV Core-core repulsion = 22949.902987 eV Total energy + Delta-G solvation = -3761.741589 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.01807 -39.78188 -38.21006 -37.30108 -35.70007 -32.73594 -31.59952 -31.45445 -30.47942 -29.11350 -27.68573 -26.69088 -24.25056 -24.07258 -22.70601 -22.09645 -21.29246 -19.89658 -19.00652 -18.20648 -17.56437 -17.00640 -16.67745 -16.30019 -16.10029 -15.60296 -15.18665 -14.89292 -14.83180 -14.72496 -14.50952 -14.35505 -14.05140 -13.76271 -13.06168 -13.01493 -12.70389 -12.56009 -12.38594 -12.03904 -11.86831 -11.64678 -11.52868 -11.37722 -11.14182 -11.03976 -11.01951 -10.82112 -10.64248 -10.40386 -10.03751 -9.47586 -9.29606 -8.71902 -8.57966 -7.99927 -7.71755 -7.49012 -6.19702 -4.19175 0.05066 0.87074 1.11770 2.01247 2.57946 2.81157 3.16601 3.18337 3.24640 3.25548 3.65073 3.85130 4.27482 4.30881 4.38224 4.56304 4.64449 4.72014 4.84725 4.87592 4.90128 5.04062 5.07951 5.13089 5.16212 5.21265 5.28194 5.40556 5.43971 5.59749 5.70640 5.72682 5.74548 5.82225 6.06073 6.08944 6.19496 6.36211 6.58269 6.61665 6.72492 6.76237 7.29110 7.33092 7.54991 7.72059 8.44799 8.86642 9.40476 10.92949 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.015786 B = 0.002849 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.262609 B = 9826.244386 C =10399.250077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.305 6.305 3 C 0.101 3.899 4 C -0.133 4.133 5 C -0.059 4.059 6 C 0.377 3.623 7 S -0.592 6.592 8 N -0.498 5.498 9 C 0.084 3.916 10 C 0.052 3.948 11 N -0.528 5.528 12 C 0.164 3.836 13 C -0.517 4.517 14 H 0.082 0.918 15 C 0.072 3.928 16 N -0.895 5.895 17 Si 0.875 3.125 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.269 1.269 21 C 0.038 3.962 22 C 0.075 3.925 23 C -0.113 4.113 24 C -0.109 4.109 25 C 0.098 3.902 26 O -0.484 6.484 27 H 0.063 0.937 28 H 0.103 0.897 29 H 0.057 0.943 30 H 0.149 0.851 31 H 0.096 0.904 32 H 0.126 0.874 33 H 0.031 0.969 34 H 0.114 0.886 35 H -0.009 1.009 36 H 0.027 0.973 37 H 0.266 0.734 38 H 0.032 0.968 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.099 0.901 42 H 0.139 0.861 43 H 0.146 0.854 44 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.773 -20.960 -8.386 23.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.218 6.218 3 C 0.055 3.945 4 C -0.154 4.154 5 C -0.064 4.064 6 C 0.119 3.881 7 S -0.452 6.452 8 N -0.191 5.191 9 C -0.038 4.038 10 C -0.077 4.077 11 N -0.253 5.253 12 C 0.038 3.962 13 C -0.555 4.555 14 H 0.100 0.900 15 C -0.131 4.131 16 N -0.533 5.533 17 Si 0.702 3.298 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.194 1.194 21 C -0.092 4.092 22 C -0.050 4.050 23 C -0.135 4.135 24 C -0.128 4.128 25 C 0.052 3.948 26 O -0.294 6.294 27 H 0.081 0.919 28 H 0.122 0.878 29 H 0.076 0.924 30 H 0.166 0.834 31 H 0.114 0.886 32 H 0.144 0.856 33 H 0.049 0.951 34 H 0.132 0.868 35 H 0.008 0.992 36 H 0.045 0.955 37 H 0.076 0.924 38 H 0.050 0.950 39 H 0.110 0.890 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.156 0.844 43 H 0.164 0.836 44 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 7.188 -20.236 -9.609 23.527 hybrid contribution 0.070 -0.893 2.402 2.563 sum 7.258 -21.129 -7.207 23.475 Atomic orbital electron populations 1.23188 0.77806 1.04335 1.02075 1.86154 1.21741 1.25456 1.88465 1.19279 0.91657 0.84978 0.98572 1.21323 1.01139 0.89853 1.03134 1.18780 0.92882 0.91321 1.03445 1.24213 0.92005 0.86036 0.85838 1.93065 1.22602 1.90384 1.39138 1.48179 1.24260 1.15714 1.30958 1.22967 0.97707 0.83699 0.99463 1.22498 0.91883 1.03319 0.89951 1.61998 1.22891 1.24224 1.16161 1.20184 0.95431 0.97086 0.83470 1.20962 1.44058 0.95142 0.95351 0.89967 1.24890 0.94643 0.94725 0.98845 1.69879 1.44655 1.11506 1.27267 0.86875 0.78360 0.80483 0.84098 1.20049 1.21027 1.19406 1.22456 1.00169 0.92414 0.94173 1.22952 0.87109 1.03998 0.90892 1.21188 0.91788 0.99246 1.01285 1.21146 1.00915 0.90206 1.00516 1.17939 0.86127 0.86728 1.04054 1.84842 1.71828 1.39258 1.33464 0.91867 0.87845 0.92406 0.83364 0.88561 0.85644 0.95079 0.86812 0.99151 0.95465 0.92445 0.94969 0.89043 0.87866 0.88315 0.84376 0.83646 0.75353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.08 10.28 -34.43 -0.35 -3.43 16 3 C 0.10 1.06 6.69 -39.19 -0.26 0.80 16 4 C -0.13 -1.48 8.45 -39.04 -0.33 -1.81 16 5 C -0.06 -0.68 5.05 -105.01 -0.53 -1.21 16 6 C 0.38 5.16 6.69 -12.52 -0.08 5.08 16 7 S -0.59 -10.09 28.09 -107.50 -3.02 -13.11 16 8 N -0.50 -6.50 3.00 -169.88 -0.51 -7.01 16 9 C 0.08 1.22 6.50 -3.36 -0.02 1.19 16 10 C 0.05 0.90 5.47 -3.46 -0.02 0.88 16 11 N -0.53 -9.52 4.62 -235.47 -1.09 -10.61 16 12 C 0.16 3.60 3.79 -4.98 -0.02 3.58 16 13 C -0.52 -13.62 8.96 -34.44 -0.31 -13.93 16 14 H 0.08 2.35 7.37 -52.48 -0.39 1.97 16 15 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 16 N -0.89 -26.20 13.96 55.43 0.77 -25.43 16 17 Si 0.87 20.31 27.47 -169.99 -4.67 15.64 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 21 C 0.04 0.52 5.62 -3.70 -0.02 0.50 16 22 C 0.07 0.82 5.28 -3.60 -0.02 0.80 16 23 C -0.11 -1.01 7.32 -39.18 -0.29 -1.30 16 24 C -0.11 -0.87 9.96 -39.53 -0.39 -1.26 16 25 C 0.10 0.92 6.72 -38.93 -0.26 0.66 16 26 O -0.48 -4.04 13.27 -33.84 -0.45 -4.49 16 27 H 0.06 0.46 7.67 -51.93 -0.40 0.07 16 28 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.39 7.65 -51.93 -0.40 -0.01 16 30 H 0.15 1.67 6.15 -52.49 -0.32 1.35 16 31 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.13 1.92 6.06 -51.25 -0.31 1.61 16 33 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.11 2.18 6.67 -51.93 -0.35 1.84 16 35 H -0.01 -0.21 7.18 -51.93 -0.37 -0.58 16 36 H 0.03 0.59 7.40 -51.93 -0.38 0.21 16 37 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.09 1.15 7.99 -51.93 -0.41 0.73 16 40 H 0.10 0.90 4.49 -51.93 -0.23 0.67 16 41 H 0.10 0.99 8.14 -51.92 -0.42 0.56 16 42 H 0.14 1.03 6.66 -52.49 -0.35 0.68 16 43 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 44 H 0.39 1.43 9.06 45.56 0.41 1.84 16 LS Contribution 364.64 15.07 5.50 5.50 Total: -1.00 -33.54 364.64 -10.69 -44.23 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -5.21 Total: 1.73 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -1.66 Total: -3.02 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: -0.82 Total: -43.05 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: -0.80 Total: -7.92 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.67 Total: 15.64 kcal Atomic # 16 Polarization: -10.09 SS G_CDS: -3.02 Total: -13.11 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.54 -10.69 -44.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020290645.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.807 kcal (2) G-P(sol) polarization free energy of solvation -33.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds