Wall clock time and date at job start Tue Mar 31 2020 05:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36006 * 116.99808 * 2 1 4 4 C 1.38145 * 119.99774 * 0.24864 * 3 2 1 5 5 C 1.39784 * 119.83979 * 180.31535 * 4 3 2 6 6 C 1.47420 * 120.07352 * 179.68361 * 5 4 3 7 7 S 1.71192 * 120.00526 * 313.90610 * 6 5 4 8 8 N 1.34780 * 119.99574 * 133.90608 * 6 5 4 9 9 C 1.47086 * 120.87845 * 183.30348 * 8 6 5 10 10 C 1.53696 * 108.27560 * 128.75701 * 9 8 6 11 11 N 1.46896 * 109.25952 * 54.08115 * 10 9 8 12 12 C 1.46895 * 111.00309 * 172.60961 * 11 10 9 13 13 C 1.50703 * 109.46834 * 294.30225 * 12 11 10 14 14 H 1.08003 * 120.00482 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99797 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99778 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00192 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.46937 * 89.99946 * 17 15 13 19 19 H 1.48500 * 109.46901 * 209.99858 * 17 15 13 20 20 H 1.48498 * 109.46969 * 330.00009 * 17 15 13 21 21 C 1.46904 * 111.26758 * 296.75646 * 11 10 9 22 22 C 1.47080 * 120.88252 * 3.57931 * 8 6 5 23 23 C 1.39761 * 119.84379 * 359.70781 * 5 4 3 24 24 C 1.37785 * 119.99626 * 359.97438 * 23 5 4 25 25 C 1.38827 * 120.16010 * 0.02562 * 24 23 5 26 26 O 1.35819 * 119.92653 * 179.97438 * 25 24 23 27 27 H 1.08993 * 109.46943 * 60.00566 * 1 2 3 28 28 H 1.09006 * 109.46668 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47270 * 299.99930 * 1 2 3 30 30 H 1.07994 * 120.08035 * 0.02562 * 4 3 2 31 31 H 1.09000 * 109.62309 * 248.52136 * 9 8 6 32 32 H 1.08997 * 109.62573 * 9.10307 * 9 8 6 33 33 H 1.09003 * 109.64786 * 294.07471 * 10 9 8 34 34 H 1.09001 * 109.41621 * 173.94742 * 10 9 8 35 35 H 1.09002 * 109.47512 * 54.29819 * 12 11 10 36 36 H 1.09002 * 109.47829 * 174.30147 * 12 11 10 37 37 H 0.96998 * 120.00006 * 179.97438 * 16 15 13 38 38 H 1.08995 * 109.49480 * 303.14333 * 21 11 10 39 39 H 1.09000 * 109.49209 * 183.06410 * 21 11 10 40 40 H 1.09000 * 109.62892 * 350.89788 * 22 8 6 41 41 H 1.09008 * 109.62494 * 111.47661 * 22 8 6 42 42 H 1.08001 * 120.00009 * 179.97438 * 23 5 4 43 43 H 1.07998 * 119.92138 * 179.97438 * 24 23 5 44 44 H 0.96702 * 114.00098 * 89.99326 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2939 2.3704 0.0052 5 6 1.9319 3.6141 -0.0015 6 6 1.1339 4.8537 -0.0030 7 16 -0.1977 5.0132 -1.0670 8 7 1.4528 5.8614 0.8332 9 6 0.6277 7.0772 0.8994 10 6 0.2802 7.3443 2.3725 11 7 1.5182 7.3908 3.1617 12 6 1.2475 7.8164 4.5414 13 6 0.7602 9.2425 4.5406 14 1 0.6619 9.7792 3.6086 15 6 0.4399 9.8621 5.7300 16 7 0.0151 11.1068 5.7294 17 14 0.6092 8.9338 7.3421 18 1 1.9741 9.1383 7.8901 19 1 -0.3948 9.4397 8.3124 20 1 0.3827 7.4854 7.1053 21 6 2.2149 6.0977 3.1369 22 6 2.6384 5.7770 1.6995 23 6 3.3280 3.6797 -0.0072 24 6 4.0720 2.5200 -0.0057 25 6 3.4384 1.2848 0.0009 26 8 4.1766 0.1447 0.0018 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.2154 2.3153 0.0097 31 1 1.1856 7.9208 0.4929 32 1 -0.2879 6.9299 0.3266 33 1 -0.3609 6.5468 2.7482 34 1 -0.2398 8.2987 2.4549 35 1 0.4841 7.1719 4.9773 36 1 2.1623 7.7453 5.1298 37 1 -0.2106 11.5426 6.5660 38 1 1.5470 5.3176 3.5019 39 1 3.0982 6.1482 3.7736 40 1 3.0528 4.7697 1.6560 41 1 3.3859 6.4981 1.3684 42 1 3.8235 4.6393 -0.0128 43 1 5.1507 2.5721 -0.0106 44 1 4.3939 -0.1825 0.8855 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020290645.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:03 Heat of formation + Delta-G solvation = -31.755083 kcal Electronic energy + Delta-G solvation = -26712.699516 eV Core-core repulsion = 22949.902987 eV Total energy + Delta-G solvation = -3762.796529 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.129 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.81687 -40.83908 -38.92055 -38.23809 -36.87196 -34.67652 -32.71449 -32.42791 -31.37560 -30.40995 -28.53712 -27.96981 -25.40972 -25.24881 -23.54865 -23.25396 -22.61693 -21.09575 -19.70198 -19.11186 -18.88133 -18.64100 -17.50663 -17.02324 -17.00416 -16.62995 -16.31558 -16.23397 -16.17540 -15.72536 -15.57107 -15.37169 -15.10617 -15.04878 -14.50808 -14.00458 -13.75646 -13.68739 -13.43648 -13.18193 -12.95485 -12.80121 -12.62951 -12.53832 -12.53165 -12.27402 -12.13644 -11.97977 -11.92428 -11.70122 -11.63034 -11.41142 -10.79574 -10.04698 -9.41621 -9.27225 -9.11162 -8.80635 -8.29433 -6.33723 -0.88978 0.17380 0.18822 0.86407 1.34459 1.36475 1.45471 1.48674 2.17428 2.32822 2.42154 2.80544 2.96815 3.06154 3.13986 3.56481 3.71209 3.75037 3.91331 3.95253 4.03093 4.04644 4.18085 4.27805 4.30626 4.33921 4.44027 4.56443 4.62205 4.66850 4.69060 4.70000 4.80102 4.83013 4.88982 4.99206 5.04069 5.07411 5.21855 5.44308 5.47508 5.49210 5.86203 6.11858 6.13644 6.52162 6.73523 6.81969 7.30128 8.86779 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.015786 B = 0.002849 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.262609 B = 9826.244386 C =10399.250077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.317 6.317 3 C 0.088 3.912 4 C -0.139 4.139 5 C -0.083 4.083 6 C 0.409 3.591 7 S -0.683 6.683 8 N -0.492 5.492 9 C 0.096 3.904 10 C 0.061 3.939 11 N -0.537 5.537 12 C 0.173 3.827 13 C -0.518 4.518 14 H 0.042 0.958 15 C 0.009 3.991 16 N -0.947 5.947 17 Si 0.945 3.055 18 H -0.261 1.261 19 H -0.287 1.287 20 H -0.252 1.252 21 C 0.035 3.965 22 C 0.079 3.921 23 C -0.102 4.102 24 C -0.098 4.098 25 C 0.106 3.894 26 O -0.493 6.493 27 H 0.056 0.944 28 H 0.126 0.874 29 H 0.060 0.940 30 H 0.137 0.863 31 H 0.103 0.897 32 H 0.116 0.884 33 H 0.024 0.976 34 H 0.082 0.918 35 H -0.014 1.014 36 H 0.041 0.959 37 H 0.266 0.734 38 H 0.031 0.969 39 H 0.115 0.885 40 H 0.136 0.864 41 H 0.121 0.879 42 H 0.161 0.839 43 H 0.180 0.820 44 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.169 -23.704 -7.388 27.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.231 6.231 3 C 0.041 3.959 4 C -0.161 4.161 5 C -0.088 4.088 6 C 0.149 3.851 7 S -0.544 6.544 8 N -0.183 5.183 9 C -0.026 4.026 10 C -0.069 4.069 11 N -0.262 5.262 12 C 0.046 3.954 13 C -0.557 4.557 14 H 0.060 0.940 15 C -0.189 4.189 16 N -0.587 5.587 17 Si 0.769 3.231 18 H -0.186 1.186 19 H -0.213 1.213 20 H -0.176 1.176 21 C -0.094 4.094 22 C -0.044 4.044 23 C -0.124 4.124 24 C -0.116 4.116 25 C 0.059 3.941 26 O -0.307 6.307 27 H 0.074 0.926 28 H 0.144 0.856 29 H 0.078 0.922 30 H 0.154 0.846 31 H 0.121 0.879 32 H 0.134 0.866 33 H 0.042 0.958 34 H 0.100 0.900 35 H 0.004 0.996 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.049 0.951 39 H 0.133 0.867 40 H 0.153 0.847 41 H 0.139 0.861 42 H 0.179 0.821 43 H 0.197 0.803 44 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 10.614 -23.006 -8.600 26.756 hybrid contribution -0.894 -0.116 2.062 2.250 sum 9.721 -23.121 -6.539 25.920 Atomic orbital electron populations 1.23348 0.76732 1.05779 1.01879 1.86132 1.22918 1.25474 1.88553 1.19465 0.92408 0.84753 0.99246 1.21244 1.00827 0.90326 1.03673 1.18737 0.93877 0.89882 1.06289 1.24141 0.90254 0.86582 0.84148 1.93285 1.26930 1.91205 1.42968 1.48242 1.24515 1.14885 1.30675 1.22679 0.97928 0.84728 0.97298 1.22301 0.91661 1.01378 0.91522 1.61884 1.22990 1.27394 1.13945 1.19941 0.95418 0.94075 0.85945 1.21243 1.43348 0.97255 0.93824 0.93959 1.25830 0.94424 0.95537 1.03070 1.70045 1.46698 1.13656 1.28329 0.85745 0.78742 0.79730 0.78876 1.18590 1.21332 1.17562 1.22633 1.00386 0.89828 0.96583 1.23221 0.86169 1.06544 0.88501 1.21427 0.90356 1.00785 0.99784 1.21456 1.02395 0.88920 0.98805 1.18175 0.85742 0.87684 1.02512 1.84784 1.71394 1.39006 1.35489 0.92561 0.85589 0.92162 0.84564 0.87892 0.86626 0.95805 0.89956 0.99643 0.94090 0.92453 0.95088 0.86728 0.84666 0.86134 0.82140 0.80284 0.72784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.32 -5.97 10.28 -79.59 -0.82 -6.79 16 3 C 0.09 1.66 6.69 22.53 0.15 1.81 16 4 C -0.14 -2.95 8.45 22.62 0.19 -2.76 16 5 C -0.08 -1.72 5.05 -20.12 -0.10 -1.82 16 6 C 0.41 10.79 6.69 86.66 0.58 11.37 16 7 S -0.68 -24.16 28.09 -56.49 -1.59 -25.75 16 8 N -0.49 -11.99 3.00 -691.39 -2.08 -14.07 16 9 C 0.10 2.81 6.50 86.50 0.56 3.37 16 10 C 0.06 2.11 5.47 86.54 0.47 2.58 16 11 N -0.54 -18.71 4.62 -898.89 -4.15 -22.87 16 12 C 0.17 7.38 3.79 85.56 0.32 7.70 16 13 C -0.52 -27.87 8.96 25.60 0.23 -27.64 16 14 H 0.04 2.55 7.37 -2.91 -0.02 2.52 16 15 C 0.01 0.50 5.47 84.66 0.46 0.97 16 16 N -0.95 -57.16 13.96 21.45 0.30 -56.86 16 17 Si 0.95 41.48 27.47 68.60 1.88 43.36 16 18 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 19 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 20 H -0.25 -10.24 6.54 99.48 0.65 -9.59 16 21 C 0.03 0.83 5.62 86.38 0.49 1.32 16 22 C 0.08 1.40 5.28 86.35 0.46 1.86 16 23 C -0.10 -1.39 7.32 22.53 0.16 -1.22 16 24 C -0.10 -1.07 9.96 22.30 0.22 -0.85 16 25 C 0.11 1.60 6.72 22.69 0.15 1.76 16 26 O -0.49 -6.41 13.27 -77.49 -1.03 -7.44 16 27 H 0.06 0.85 7.67 -2.39 -0.02 0.83 16 28 H 0.13 1.10 8.14 -2.38 -0.02 1.08 16 29 H 0.06 0.79 7.65 -2.39 -0.02 0.77 16 30 H 0.14 3.15 6.15 -2.91 -0.02 3.13 16 31 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 32 H 0.12 3.70 6.06 -2.82 -0.02 3.69 16 33 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.08 3.38 6.67 -2.39 -0.02 3.36 16 35 H -0.01 -0.62 7.18 -2.39 -0.02 -0.64 16 36 H 0.04 1.66 7.40 -2.39 -0.02 1.64 16 37 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 38 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.11 2.32 7.99 -2.39 -0.02 2.30 16 40 H 0.14 1.65 4.49 -2.39 -0.01 1.64 16 41 H 0.12 1.79 8.14 -2.38 -0.02 1.77 16 42 H 0.16 1.48 6.66 -2.91 -0.02 1.46 16 43 H 0.18 0.82 8.06 -2.91 -0.02 0.80 16 44 H 0.41 1.40 9.06 -74.06 -0.67 0.73 16 Total: -1.00 -76.72 364.64 -1.70 -78.42 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 0.31 Total: 12.19 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: 5.47 Total: -0.19 kcal Atomic # 7 Polarization: -87.87 SS G_CDS: -5.93 Total: -93.80 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -1.85 Total: -14.23 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 1.88 Total: 43.36 kcal Atomic # 16 Polarization: -24.16 SS G_CDS: -1.59 Total: -25.75 kcal Total: -76.72 -1.70 -78.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020290645.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.665 kcal (2) G-P(sol) polarization free energy of solvation -76.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds