Wall clock time and date at job start Tue Mar 31 2020 05:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32285 * 120.24682 * 2 1 4 4 C 1.31914 * 122.34334 * 180.31034 * 3 2 1 5 5 N 1.36978 * 118.70576 * 179.71051 * 4 3 2 6 6 C 1.38693 * 119.99846 * 359.73326 * 5 4 3 7 7 N 1.33146 * 118.67247 * 180.02562 * 6 5 4 8 8 C 1.31652 * 121.56397 * 179.42362 * 7 6 5 9 9 C 1.50696 * 120.76371 * 180.02562 * 8 7 6 10 10 C 1.40746 * 118.45891 * 0.82463 * 8 7 6 11 11 C 1.40235 * 122.04724 * 179.19324 * 10 8 7 12 12 C 1.36254 * 119.50114 * 180.02562 * 11 10 8 13 13 C 1.39324 * 120.96198 * 359.97438 * 12 11 10 14 14 C 1.36231 * 121.07037 * 359.97438 * 13 12 11 15 15 C 1.40273 * 119.59205 * 0.28017 * 14 13 12 16 16 N 1.31816 * 118.66979 * 359.97438 * 6 5 4 17 17 N 1.35955 * 122.58951 * 359.43236 * 4 3 2 18 18 H 0.96998 * 119.96956 * 180.28068 * 17 4 3 19 19 C 1.35158 * 120.06104 * 0.29603 * 17 4 3 20 20 O 1.21758 * 121.09460 * 179.97438 * 19 17 4 21 21 C 1.40679 * 120.25402 * 179.78295 * 2 1 3 22 22 C 1.40616 * 121.15274 * 359.95132 * 21 2 1 23 23 H 1.08003 * 120.00056 * 324.53161 * 22 21 2 24 24 C 1.39897 * 120.00394 * 144.52776 * 22 21 2 25 25 N 1.30971 * 119.99759 * 339.39551 * 24 22 21 26 26 Si 1.86791 * 120.00524 * 159.38937 * 24 22 21 27 27 H 1.48497 * 109.47360 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.47392 * 120.00185 * 26 24 22 29 29 H 1.48501 * 109.47675 * 240.00290 * 26 24 22 30 30 H 1.09002 * 109.46793 * 270.21629 * 1 2 3 31 31 H 1.08997 * 109.47520 * 30.22088 * 1 2 3 32 32 H 1.09005 * 109.46545 * 150.22181 * 1 2 3 33 33 H 0.96998 * 120.00426 * 179.73270 * 5 4 3 34 34 H 1.09002 * 109.47545 * 270.77695 * 9 8 7 35 35 H 1.08993 * 109.47747 * 30.78132 * 9 8 7 36 36 H 1.09000 * 109.46768 * 150.77865 * 9 8 7 37 37 H 1.08001 * 120.25119 * 0.04815 * 11 10 8 38 38 H 1.08007 * 119.52167 * 180.02562 * 12 11 10 39 39 H 1.08000 * 119.46668 * 180.02562 * 13 12 11 40 40 H 1.08004 * 120.20450 * 180.02562 * 14 13 12 41 41 H 0.96989 * 120.00015 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1734 1.1428 0.0000 4 6 3.4916 1.1910 -0.0060 5 7 4.1051 2.4157 -0.0116 6 6 3.3418 3.5737 -0.0165 7 7 3.9655 4.7500 -0.0224 8 6 3.2973 5.8842 -0.0385 9 6 4.0218 7.2056 -0.0455 10 6 1.8908 5.8342 -0.0317 11 6 1.1049 6.9956 -0.0310 12 6 -0.2533 6.8868 -0.0238 13 6 -0.8723 5.6386 -0.0176 14 6 -0.1393 4.4903 -0.0192 15 6 1.2615 4.5627 -0.0211 16 7 2.0281 3.4651 -0.0161 17 7 4.2653 0.0731 -0.0014 18 1 5.2320 0.1529 -0.0020 19 6 3.6888 -1.1493 0.0039 20 8 4.3635 -2.1628 0.0076 21 6 2.2158 -1.2152 0.0046 22 6 1.5428 -2.4498 0.0103 23 1 0.6159 -2.5571 0.5542 24 6 2.0738 -3.5392 -0.6885 25 7 2.9382 -3.3406 -1.6523 26 14 1.5503 -5.2771 -0.2472 27 1 0.5708 -5.2309 0.8680 28 1 0.9233 -5.9206 -1.4296 29 1 2.7399 -6.0616 0.1706 30 1 -0.3633 0.0039 1.0277 31 1 -0.3634 0.8880 -0.5172 32 1 -0.3632 -0.8920 -0.5104 33 1 5.0734 2.4732 -0.0122 34 1 4.2007 7.5274 0.9804 35 1 4.9747 7.0949 -0.5629 36 1 3.4139 7.9504 -0.5591 37 1 1.5726 7.9691 -0.0365 38 1 -0.8589 7.7811 -0.0237 39 1 -1.9507 5.5804 -0.0124 40 1 -0.6337 3.5301 -0.0147 41 1 3.3066 -4.0959 -2.1365 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020673266.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:42 Heat of formation + Delta-G solvation = 101.109280 kcal Electronic energy + Delta-G solvation = -28313.339010 eV Core-core repulsion = 24387.726801 eV Total energy + Delta-G solvation = -3925.612209 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.128 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.13761 -39.75413 -37.87176 -36.51036 -35.11144 -34.52835 -33.61677 -32.52489 -31.23890 -30.05632 -29.59122 -28.26281 -27.62977 -25.10856 -23.77286 -23.55360 -21.92040 -21.11201 -20.89115 -18.94957 -18.03609 -17.90893 -16.89303 -16.58678 -16.24320 -15.42162 -15.34921 -15.23139 -14.92644 -14.34324 -14.29654 -14.01787 -13.72537 -13.29266 -13.27221 -13.06461 -12.65112 -12.45108 -12.23566 -12.21563 -11.89794 -11.67977 -11.48861 -11.42658 -11.22265 -11.19162 -10.72008 -10.58192 -10.50025 -10.35903 -9.79229 -9.39594 -9.00791 -8.83273 -8.79644 -8.59732 -7.90358 -7.75046 -7.06969 -6.61530 -4.16904 0.50820 1.00282 2.11946 2.32000 2.80362 3.03736 3.09809 3.12651 3.23288 3.63245 3.89427 4.20223 4.25563 4.40306 4.50427 4.61547 4.74492 4.85209 5.02191 5.15212 5.31340 5.37828 5.44702 5.47406 5.53208 5.74956 5.84310 6.00176 6.02079 6.11298 6.27600 6.46832 6.52645 6.73852 6.77717 6.83344 6.90878 6.93926 6.98409 7.11352 7.45150 7.51154 7.57549 7.92681 8.01864 8.28667 8.54827 8.61663 8.74154 9.45094 9.76423 10.04799 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.020163 B = 0.003168 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.382314 B = 8835.405003 C =10078.691334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 C -0.071 4.071 3 N -0.420 5.420 4 C 0.399 3.601 5 N -0.600 5.600 6 C 0.556 3.444 7 N -0.560 5.560 8 C 0.243 3.757 9 C -0.106 4.106 10 C -0.211 4.211 11 C -0.067 4.067 12 C -0.149 4.149 13 C -0.084 4.084 14 C -0.103 4.103 15 C 0.199 3.801 16 N -0.472 5.472 17 N -0.643 5.643 18 H 0.385 0.615 19 C 0.530 3.470 20 O -0.532 6.532 21 C -0.007 4.007 22 C -0.397 4.397 23 H 0.095 0.905 24 C 0.075 3.925 25 N -0.736 5.736 26 Si 0.913 3.087 27 H -0.257 1.257 28 H -0.273 1.273 29 H -0.270 1.270 30 H 0.036 0.964 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.417 0.583 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.127 0.873 38 H 0.122 0.878 39 H 0.126 0.874 40 H 0.140 0.860 41 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.273 18.135 1.679 18.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.196 4.196 3 N -0.142 5.142 4 C 0.053 3.947 5 N -0.232 5.232 6 C 0.198 3.802 7 N -0.280 5.280 8 C 0.081 3.919 9 C -0.163 4.163 10 C -0.218 4.218 11 C -0.087 4.087 12 C -0.168 4.168 13 C -0.105 4.105 14 C -0.122 4.122 15 C 0.067 3.933 16 N -0.194 5.194 17 N -0.292 5.292 18 H 0.220 0.780 19 C 0.325 3.675 20 O -0.408 6.408 21 C -0.016 4.016 22 C -0.426 4.426 23 H 0.113 0.887 24 C -0.150 4.150 25 N -0.357 5.357 26 Si 0.737 3.263 27 H -0.181 1.181 28 H -0.199 1.199 29 H -0.195 1.195 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.255 0.745 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.145 0.855 38 H 0.140 0.860 39 H 0.144 0.856 40 H 0.158 0.842 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.075 16.815 1.497 17.009 hybrid contribution 0.993 -0.722 0.127 1.234 sum -1.082 16.093 1.624 16.211 Atomic orbital electron populations 1.19898 0.90519 1.00485 0.99312 1.20366 0.94900 0.85790 1.18551 1.67055 1.01199 1.29407 1.16550 1.17551 0.86505 0.78193 1.12465 1.40201 1.07822 1.00237 1.74959 1.18847 0.85964 0.84050 0.91295 1.67263 1.42122 0.97718 1.20935 1.21631 0.89469 0.93373 0.87422 1.20793 1.00837 0.91017 1.03699 1.19247 0.95023 0.95979 1.11572 1.20805 0.93784 0.96731 0.97404 1.20783 0.94687 0.97622 1.03676 1.20945 1.00121 0.92120 0.97333 1.20783 0.91132 0.99576 1.00701 1.19079 0.94783 0.87160 0.92288 1.69305 1.02887 1.28040 1.19186 1.44093 1.09657 1.06593 1.68845 0.78037 1.19285 0.90252 0.80428 0.77568 1.90728 1.65646 1.32869 1.51571 1.20181 0.88617 0.94914 0.97910 1.19287 1.06566 0.93154 1.23552 0.88738 1.25977 0.93553 1.01989 0.93514 1.69771 1.18626 1.34801 1.12506 0.86169 0.79500 0.80985 0.79630 1.18085 1.19881 1.19543 0.94481 0.93613 0.92212 0.74542 0.89495 0.89786 0.89930 0.85540 0.86026 0.85586 0.84248 0.90368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.95 9.68 36.01 0.35 -0.60 16 2 C -0.07 -1.77 6.90 -81.48 -0.56 -2.33 16 3 N -0.42 -10.03 7.29 -9.33 -0.07 -10.09 16 4 C 0.40 8.75 8.42 -320.98 -2.70 6.04 16 5 N -0.60 -11.00 5.48 -14.59 -0.08 -11.08 16 6 C 0.56 10.41 8.37 -322.41 -2.70 7.71 16 7 N -0.56 -8.96 10.34 -9.69 -0.10 -9.06 16 8 C 0.24 3.24 6.90 -81.72 -0.56 2.68 16 9 C -0.11 -0.86 9.79 36.00 0.35 -0.51 16 10 C -0.21 -2.95 5.74 -106.81 -0.61 -3.56 16 11 C -0.07 -0.69 9.33 -39.55 -0.37 -1.06 16 12 C -0.15 -1.45 9.95 -39.89 -0.40 -1.85 16 13 C -0.08 -0.93 9.95 -39.90 -0.40 -1.32 16 14 C -0.10 -1.49 10.01 -39.54 -0.40 -1.89 16 15 C 0.20 3.37 6.62 -84.82 -0.56 2.80 16 16 N -0.47 -9.40 7.51 -11.87 -0.09 -9.49 16 17 N -0.64 -14.17 5.30 -13.71 -0.07 -14.24 16 18 H 0.38 7.13 8.80 -40.82 -0.36 6.78 16 19 C 0.53 13.97 7.48 -12.34 -0.09 13.88 16 20 O -0.53 -15.18 15.07 5.14 0.08 -15.11 16 21 C -0.01 -0.18 5.55 -104.33 -0.58 -0.76 16 22 C -0.40 -10.34 7.81 -38.06 -0.30 -10.64 16 23 H 0.09 2.30 7.42 -52.48 -0.39 1.91 16 24 C 0.07 1.90 4.62 -17.30 -0.08 1.82 16 25 N -0.74 -19.77 11.17 55.55 0.62 -19.15 16 26 Si 0.91 18.99 29.61 -169.99 -5.03 13.95 16 27 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 28 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 29 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.06 1.26 7.03 -51.93 -0.37 0.89 16 33 H 0.42 6.20 8.80 -40.82 -0.36 5.84 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.49 6.57 -51.93 -0.34 0.15 16 37 H 0.13 0.89 6.52 -52.49 -0.34 0.55 16 38 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 39 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.14 2.08 8.06 -52.48 -0.42 1.65 16 41 H 0.29 7.03 8.30 -40.82 -0.34 6.69 16 LS Contribution 350.38 15.07 5.28 5.28 Total: -1.00 -33.69 350.38 -13.32 -47.02 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -4.25 Total: 11.54 kcal Atomic # 6 Polarization: 20.03 SS G_CDS: -9.61 Total: 10.43 kcal Atomic # 7 Polarization: -73.32 SS G_CDS: 0.21 Total: -73.11 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: 0.08 Total: -15.11 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.69 -13.32 -47.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020673266.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.124 kcal (2) G-P(sol) polarization free energy of solvation -33.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds