Wall clock time and date at job start Tue Mar 31 2020 06:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50695 * 109.47326 * 2 1 4 4 C 1.39266 * 119.78211 * 124.72823 * 3 2 1 5 5 C 1.38161 * 119.01378 * 179.70019 * 4 3 2 6 6 N 1.37709 * 120.64488 * 180.26255 * 5 4 3 7 7 C 1.46901 * 111.00072 * 236.38706 * 6 5 4 8 8 C 1.50704 * 109.47087 * 59.87455 * 7 6 5 9 9 H 1.07998 * 120.00096 * 4.90295 * 8 7 6 10 10 C 1.37879 * 119.99708 * 184.90949 * 8 7 6 11 11 N 1.31516 * 119.99999 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99901 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.47226 * 59.99523 * 12 10 8 14 14 H 1.48498 * 109.47355 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47094 * 299.99752 * 12 10 8 16 16 C 1.46908 * 110.99729 * 0.33659 * 6 5 4 17 17 C 1.50700 * 109.46782 * 167.62419 * 16 6 5 18 18 C 1.38241 * 119.99825 * 275.58296 * 17 16 6 19 19 C 1.38230 * 119.99710 * 179.77072 * 18 17 16 20 20 C 1.38235 * 120.00461 * 0.50618 * 19 18 17 21 21 C 1.38230 * 119.99412 * 359.74409 * 20 19 18 22 22 C 1.38229 * 120.00574 * 0.02562 * 21 20 19 23 23 N 1.36515 * 118.70986 * 0.59348 * 5 4 3 24 24 N 1.40060 * 133.37087 * 179.70598 * 23 5 4 25 25 C 1.31067 * 107.03775 * 179.97438 * 24 23 5 26 26 N 1.32735 * 109.62464 * 0.02562 * 25 24 23 27 27 C 1.32856 * 109.74202 * 359.97438 * 26 25 24 28 28 N 1.31651 * 119.78595 * 305.00032 * 3 2 1 29 29 H 1.09004 * 109.47038 * 300.00046 * 1 2 3 30 30 H 1.09003 * 109.47422 * 59.99497 * 1 2 3 31 31 H 1.09004 * 109.47734 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47038 * 239.99954 * 2 1 3 33 33 H 1.08997 * 109.47012 * 120.00413 * 2 1 3 34 34 H 1.07993 * 120.48673 * 0.02562 * 4 3 2 35 35 H 1.08996 * 109.46924 * 179.87360 * 7 6 5 36 36 H 1.08993 * 109.47046 * 299.87441 * 7 6 5 37 37 H 0.97002 * 119.99497 * 180.02562 * 11 10 8 38 38 H 1.09000 * 109.47580 * 287.62282 * 16 6 5 39 39 H 1.09000 * 109.46848 * 47.62910 * 16 6 5 40 40 H 1.08002 * 119.99970 * 0.02562 * 18 17 16 41 41 H 1.08011 * 119.99756 * 180.23361 * 19 18 17 42 42 H 1.07997 * 120.00313 * 179.73439 * 20 19 18 43 43 H 1.08009 * 120.00050 * 179.97438 * 21 20 19 44 44 H 1.08004 * 120.00541 * 179.97438 * 22 21 20 45 45 H 1.07997 * 125.18783 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.9121 1.8434 0.9934 5 6 3.3676 3.1476 0.9746 6 7 4.2425 3.5995 1.9373 7 6 3.7001 4.7751 2.6313 8 6 2.3959 4.4107 3.2928 9 1 2.0479 3.3885 3.2737 10 6 1.6471 5.3823 3.9222 11 7 2.0711 6.6270 3.9458 12 14 0.0302 4.9307 4.7415 13 1 0.2781 3.9239 5.8046 14 1 -0.5764 6.1455 5.3426 15 1 -0.8963 4.3634 3.7290 16 6 4.5738 2.5318 2.8904 17 6 5.7465 2.9588 3.7351 18 6 7.0356 2.7777 3.2700 19 6 8.1111 3.1736 4.0428 20 6 7.8980 3.7411 5.2852 21 6 6.6090 3.9173 5.7524 22 6 5.5333 3.5258 4.9777 23 7 2.9282 3.9815 -0.0129 24 7 3.1768 5.3256 -0.3181 25 6 2.4804 5.6110 -1.3912 26 7 1.8075 4.5366 -1.7846 27 6 2.0597 3.5234 -0.9632 28 7 1.6325 2.2558 -0.9359 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3635 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.2376 1.1602 1.7639 35 1 4.4099 5.1101 3.3876 36 1 3.5311 5.5760 1.9117 37 1 1.5443 7.3104 4.3889 38 1 3.7146 2.3386 3.5327 39 1 4.8307 1.6242 2.3443 40 1 7.2023 2.3307 2.3011 41 1 9.1183 3.0356 3.6778 42 1 8.7384 4.0465 5.8908 43 1 6.4424 4.3603 6.7233 44 1 4.5262 3.6631 5.3429 45 1 2.4570 6.5736 -1.8802 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000022640238.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:11 Heat of formation + Delta-G solvation = 171.459968 kcal Electronic energy + Delta-G solvation = -29512.863403 eV Core-core repulsion = 25726.134923 eV Total energy + Delta-G solvation = -3786.728480 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.160 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.31372 -39.63539 -38.58758 -37.30560 -33.86466 -32.94970 -32.68717 -31.08272 -30.63573 -30.04693 -29.57784 -27.30169 -25.89001 -24.76332 -23.32740 -22.77744 -22.20664 -21.38158 -21.14035 -20.05713 -17.88431 -17.45050 -16.81882 -16.34235 -16.16017 -15.99247 -15.16525 -14.97841 -14.74018 -14.59758 -14.26445 -13.92663 -13.76504 -13.58368 -13.17882 -13.07691 -12.77624 -12.55395 -12.35621 -12.09150 -11.70728 -11.68933 -11.51421 -11.35369 -11.26338 -11.16869 -10.97625 -10.84356 -10.68981 -10.58581 -10.33305 -10.11749 -9.60643 -9.46082 -9.13957 -8.78020 -8.65952 -8.59173 -8.44992 -7.54662 -6.30477 -4.42013 1.07614 1.32524 1.55208 1.69408 2.40352 3.12908 3.14164 3.19726 3.21970 3.73727 3.85639 3.98429 4.19148 4.32381 4.55874 4.94741 4.98534 5.04190 5.05212 5.13614 5.23472 5.24498 5.32976 5.37807 5.41010 5.54228 5.61024 5.74064 5.78392 5.86244 5.88168 5.93175 6.07134 6.11775 6.24477 6.34660 6.35867 6.51993 6.66235 6.69017 6.78312 6.80123 6.89258 6.93902 7.12749 7.26714 7.34691 7.57558 7.63449 7.83828 8.08015 8.51823 8.62661 9.25851 10.75837 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.008540 B = 0.005057 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3277.770455 B = 5535.631176 C = 6506.601259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.069 4.069 3 C 0.251 3.749 4 C -0.318 4.318 5 C 0.460 3.540 6 N -0.479 5.479 7 C 0.184 3.816 8 C -0.568 4.568 9 H 0.059 0.941 10 C 0.077 3.923 11 N -0.875 5.875 12 Si 0.890 3.110 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.276 1.276 16 C 0.092 3.908 17 C -0.074 4.074 18 C -0.101 4.101 19 C -0.131 4.131 20 C -0.122 4.122 21 C -0.125 4.125 22 C -0.087 4.087 23 N -0.326 5.326 24 N -0.314 5.314 25 C 0.235 3.765 26 N -0.548 5.548 27 C 0.469 3.531 28 N -0.503 5.503 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.164 0.836 35 H 0.051 0.949 36 H 0.069 0.931 37 H 0.267 0.733 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.119 0.881 44 H 0.133 0.867 45 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.353 -11.159 -0.651 12.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 C 0.091 3.909 4 C -0.349 4.349 5 C 0.238 3.762 6 N -0.191 5.191 7 C 0.063 3.937 8 C -0.606 4.606 9 H 0.077 0.923 10 C -0.128 4.128 11 N -0.511 5.511 12 Si 0.717 3.283 13 H -0.198 1.198 14 H -0.208 1.208 15 H -0.201 1.201 16 C -0.034 4.034 17 C -0.075 4.075 18 C -0.119 4.119 19 C -0.149 4.149 20 C -0.140 4.140 21 C -0.143 4.143 22 C -0.105 4.105 23 N -0.108 5.108 24 N -0.143 5.143 25 C -0.067 4.067 26 N -0.283 5.283 27 C 0.108 3.892 28 N -0.224 5.224 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.181 0.819 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.137 0.863 44 H 0.151 0.849 45 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 6.459 -10.174 -1.469 12.140 hybrid contribution -0.894 0.147 1.519 1.769 sum 5.565 -10.027 0.050 11.467 Atomic orbital electron populations 1.21694 0.93628 1.01737 1.03313 1.20528 0.97417 0.89140 1.03652 1.21453 0.87809 0.95311 0.86330 1.21688 1.09782 0.95775 1.07611 1.19100 0.83783 0.87065 0.86220 1.58519 1.36205 1.10949 1.13396 1.20320 0.93982 0.84869 0.94498 1.21478 1.05853 0.95232 1.38044 0.92260 1.24856 0.97739 0.94683 0.95569 1.69927 1.38507 1.00767 1.41887 0.86671 0.83621 0.78210 0.79806 1.19768 1.20845 1.20106 1.21305 0.96813 0.92164 0.93074 1.19575 0.93715 0.99559 0.94620 1.20978 0.92089 0.99820 0.99058 1.21022 0.98486 1.00360 0.95031 1.21090 0.96871 0.99765 0.96297 1.21129 0.92643 1.00452 1.00078 1.21306 0.99821 0.95676 0.93734 1.48528 1.32305 1.09775 1.20185 1.78557 1.27799 0.88990 1.18996 1.26129 0.90796 0.98404 0.91380 1.70834 1.30515 0.98118 1.28854 1.22691 0.88217 0.92369 0.85884 1.67629 1.28815 0.98537 1.27428 0.92540 0.91249 0.92181 0.89204 0.89553 0.81872 0.93072 0.91265 0.92282 0.89888 0.89952 0.86483 0.86580 0.86651 0.86321 0.84927 0.76107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.77 37.15 0.36 -1.28 16 2 C -0.07 -0.77 6.34 -27.89 -0.18 -0.94 16 3 C 0.25 4.00 6.21 -82.29 -0.51 3.49 16 4 C -0.32 -5.20 8.46 -39.23 -0.33 -5.54 16 5 C 0.46 9.21 5.39 -152.98 -0.82 8.38 16 6 N -0.48 -9.53 4.75 -175.44 -0.83 -10.36 16 7 C 0.18 4.40 4.74 -4.97 -0.02 4.38 16 8 C -0.57 -14.26 7.67 -34.44 -0.26 -14.53 16 9 H 0.06 1.46 6.49 -52.49 -0.34 1.12 16 10 C 0.08 2.04 5.46 -17.82 -0.10 1.94 16 11 N -0.87 -24.40 13.29 55.43 0.74 -23.67 16 12 Si 0.89 20.57 29.54 -169.99 -5.02 15.54 16 13 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 16 C 0.09 1.49 3.65 -4.97 -0.02 1.47 16 17 C -0.07 -1.18 4.79 -104.62 -0.50 -1.68 16 18 C -0.10 -1.43 9.72 -39.58 -0.38 -1.82 16 19 C -0.13 -1.70 10.05 -39.59 -0.40 -2.09 16 20 C -0.12 -1.58 10.05 -39.59 -0.40 -1.98 16 21 C -0.12 -1.80 10.05 -39.59 -0.40 -2.20 16 22 C -0.09 -1.42 8.34 -39.59 -0.33 -1.75 16 23 N -0.33 -7.17 3.76 -12.98 -0.05 -7.22 16 24 N -0.31 -7.01 10.92 29.26 0.32 -6.69 16 25 C 0.24 4.58 12.98 -91.96 -1.19 3.38 16 26 N -0.55 -11.69 11.26 -15.66 -0.18 -11.87 16 27 C 0.47 10.18 9.00 -323.16 -2.91 7.27 16 28 N -0.50 -9.73 10.00 -10.18 -0.10 -9.83 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.89 7.95 -51.93 -0.41 0.48 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.09 0.73 7.90 -51.93 -0.41 0.32 16 34 H 0.16 2.10 5.76 -52.49 -0.30 1.80 16 35 H 0.05 1.29 6.29 -51.93 -0.33 0.96 16 36 H 0.07 1.90 6.21 -51.93 -0.32 1.58 16 37 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.08 1.40 6.25 -51.93 -0.32 1.07 16 39 H 0.08 1.08 6.51 -51.93 -0.34 0.74 16 40 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 41 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 42 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 43 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 44 H 0.13 2.35 8.06 -52.48 -0.42 1.92 16 45 H 0.22 3.15 8.06 -52.49 -0.42 2.73 16 LS Contribution 371.95 15.07 5.61 5.61 Total: -1.00 -32.20 371.95 -13.63 -45.84 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -5.72 Total: 6.15 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -8.40 Total: -3.50 kcal Atomic # 7 Polarization: -69.54 SS G_CDS: -0.10 Total: -69.64 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.20 -13.63 -45.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022640238.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.297 kcal (2) G-P(sol) polarization free energy of solvation -32.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 185.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds