Wall clock time and date at job start Tue Mar 31 2020 05:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.46497 * 120.00322 * 2 1 4 4 C 1.50707 * 109.47162 * 269.99844 * 3 2 1 5 5 H 1.07998 * 119.99576 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00057 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99930 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 119.99982 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47241 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47303 * 119.99759 * 8 6 4 11 11 H 1.48495 * 109.47340 * 239.99921 * 8 6 4 12 12 C 1.34780 * 120.00111 * 179.97438 * 2 1 3 13 13 O 1.21280 * 120.00423 * 179.97438 * 12 2 1 14 14 C 1.50701 * 119.99795 * 0.02562 * 12 2 1 15 15 N 1.46901 * 109.46921 * 179.97438 * 14 12 2 16 16 C 1.47006 * 111.00285 * 293.63247 * 15 14 12 17 17 C 1.53101 * 109.26190 * 177.60744 * 16 15 14 18 18 O 1.43020 * 109.25617 * 56.84928 * 17 16 15 19 19 C 1.43021 * 113.73919 * 301.33283 * 18 17 16 20 20 H 1.08998 * 109.50602 * 298.73794 * 19 18 17 21 21 C 1.50698 * 109.50760 * 178.60201 * 19 18 17 22 22 C 1.38246 * 119.97458 * 324.94443 * 21 19 18 23 23 C 1.38196 * 120.02567 * 179.76398 * 22 21 19 24 24 C 1.38460 * 119.96985 * 0.50600 * 23 22 21 25 25 F 1.35105 * 120.02229 * 179.76706 * 24 23 22 26 26 C 1.38461 * 119.95130 * 359.74631 * 24 23 22 27 27 C 1.38192 * 119.97419 * 0.02562 * 26 24 23 28 28 C 1.47016 * 110.99837 * 169.99736 * 15 14 12 29 29 H 1.08995 * 109.47620 * 270.00337 * 1 2 3 30 30 H 1.09006 * 109.47028 * 30.00444 * 1 2 3 31 31 H 1.09002 * 109.47109 * 150.00022 * 1 2 3 32 32 H 1.09000 * 109.47018 * 29.99405 * 3 2 1 33 33 H 1.09000 * 109.47828 * 149.99700 * 3 2 1 34 34 H 0.97001 * 119.99961 * 180.02562 * 7 6 4 35 35 H 1.09002 * 109.47060 * 299.99722 * 14 12 2 36 36 H 1.09001 * 109.47380 * 59.99809 * 14 12 2 37 37 H 1.08998 * 109.50801 * 297.54617 * 16 15 14 38 38 H 1.08998 * 109.50572 * 57.67603 * 16 15 14 39 39 H 1.09002 * 109.50522 * 296.91967 * 17 16 15 40 40 H 1.08993 * 109.54601 * 176.80294 * 17 16 15 41 41 H 1.08000 * 119.98745 * 0.02562 * 22 21 19 42 42 H 1.07998 * 120.01649 * 180.24996 * 23 22 21 43 43 H 1.08001 * 120.01202 * 180.02562 * 26 24 23 44 44 H 1.07997 * 119.98765 * 180.02562 * 27 26 24 45 45 H 1.08996 * 109.50975 * 302.32925 * 28 15 14 46 46 H 1.08999 * 109.50547 * 62.41508 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0981 1.0957 -2.2417 6 6 3.1261 2.8778 -1.6728 7 7 3.5525 3.6184 -0.6732 8 14 3.4368 3.4174 -3.4339 9 1 2.8600 2.4168 -4.3674 10 1 2.7988 4.7379 -3.6670 11 1 4.8992 3.5261 -3.6677 12 6 2.1388 -1.1672 0.0005 13 8 3.3516 -1.1673 0.0001 14 6 1.3853 -2.4723 0.0005 15 7 2.3399 -3.5889 0.0005 16 6 3.1005 -3.6318 -1.2568 17 6 4.1221 -4.7701 -1.1904 18 8 3.4415 -6.0001 -0.9271 19 6 2.6910 -5.9936 0.2904 20 1 3.3641 -5.8306 1.1320 21 6 1.9885 -7.3166 0.4556 22 6 1.5047 -7.9850 -0.6536 23 6 0.8647 -9.2006 -0.5039 24 6 0.6989 -9.7441 0.7588 25 9 0.0692 -10.9302 0.9069 26 6 1.1793 -9.0712 1.8695 27 6 1.8231 -7.8580 1.7168 28 6 1.6549 -4.8677 0.2389 29 1 -0.3634 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6084 2.0283 0.5137 33 1 3.1499 1.1384 0.5139 34 1 4.0288 4.4447 -0.8504 35 1 0.7583 -2.5299 0.8903 36 1 0.7589 -2.5303 -0.8897 37 1 2.4181 -3.8033 -2.0893 38 1 3.6200 -2.6845 -1.4004 39 1 4.8369 -4.5716 -0.3917 40 1 4.6497 -4.8426 -2.1414 41 1 1.6307 -7.5590 -1.6381 42 1 0.4904 -9.7246 -1.3709 43 1 1.0508 -9.4944 2.8548 44 1 2.1982 -7.3332 2.5829 45 1 1.1192 -4.8224 1.1871 46 1 0.9489 -5.0585 -0.5692 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023057528.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:56 Heat of formation + Delta-G solvation = -80.916517 kcal Electronic energy + Delta-G solvation = -28741.324004 eV Core-core repulsion = 24546.015594 eV Total energy + Delta-G solvation = -4195.308410 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.20198 -40.36873 -39.22872 -38.34940 -35.59013 -34.68494 -32.80861 -32.64455 -31.48376 -29.70961 -29.09952 -27.57449 -25.88863 -24.88302 -24.26124 -23.39039 -22.59451 -21.67860 -20.39793 -18.51001 -18.01637 -16.99884 -16.79886 -16.56711 -16.45134 -16.03233 -15.87652 -15.45170 -15.35204 -15.21986 -14.76270 -14.49352 -14.29273 -14.16156 -13.88580 -13.75993 -13.42950 -13.34376 -12.73667 -12.68006 -12.49814 -12.22211 -12.00829 -11.86221 -11.81525 -11.49793 -11.32190 -11.24810 -11.20246 -10.87444 -10.66186 -10.58485 -10.17860 -9.87643 -9.63768 -9.44806 -9.02000 -8.81161 -8.46902 -8.27921 -7.66188 -6.07322 -4.12281 0.74421 0.90009 3.14815 3.26923 3.33670 3.36300 3.41306 3.50321 3.60878 3.92663 4.14400 4.40839 4.41944 4.51307 4.55694 4.75063 4.91241 4.96557 5.00596 5.03424 5.13927 5.24129 5.28208 5.31959 5.41253 5.46371 5.51744 5.54955 5.63654 5.65906 5.67730 5.77597 5.88562 5.91880 5.92708 6.06635 6.16149 6.20294 6.52793 6.79309 6.91371 7.06625 7.10178 7.42328 7.51609 7.89145 8.20226 8.39023 8.87568 9.08333 9.53018 11.00679 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.025128 B = 0.002162 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.037534 B =12948.316209 C =13359.018965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.604 5.604 3 C 0.246 3.754 4 C -0.525 4.525 5 H 0.056 0.944 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.506 3.494 13 O -0.525 6.525 14 C 0.038 3.962 15 N -0.517 5.517 16 C 0.012 3.988 17 C 0.069 3.931 18 O -0.382 6.382 19 C 0.138 3.862 20 H 0.080 0.920 21 C -0.089 4.089 22 C -0.062 4.062 23 C -0.157 4.157 24 C 0.097 3.903 25 F -0.142 7.142 26 C -0.155 4.155 27 C -0.078 4.078 28 C 0.030 3.970 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.032 0.968 33 H 0.044 0.956 34 H 0.263 0.737 35 H 0.097 0.903 36 H 0.059 0.941 37 H 0.036 0.964 38 H 0.114 0.886 39 H 0.064 0.936 40 H 0.100 0.900 41 H 0.138 0.862 42 H 0.135 0.865 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.086 0.914 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.527 -23.535 3.210 24.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.337 5.337 3 C 0.127 3.873 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.208 1.208 12 C 0.291 3.709 13 O -0.401 6.401 14 C -0.093 4.093 15 N -0.242 5.242 16 C -0.116 4.116 17 C -0.008 4.008 18 O -0.301 6.301 19 C 0.080 3.920 20 H 0.098 0.902 21 C -0.090 4.090 22 C -0.080 4.080 23 C -0.175 4.175 24 C 0.078 3.922 25 F -0.120 7.120 26 C -0.173 4.173 27 C -0.096 4.096 28 C -0.098 4.098 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.116 0.884 36 H 0.076 0.924 37 H 0.054 0.946 38 H 0.132 0.868 39 H 0.083 0.917 40 H 0.118 0.882 41 H 0.156 0.844 42 H 0.153 0.847 43 H 0.155 0.845 44 H 0.154 0.846 45 H 0.104 0.896 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.464 -23.456 3.519 24.583 hybrid contribution -0.734 0.372 -1.452 1.669 sum -7.198 -23.083 2.067 24.268 Atomic orbital electron populations 1.21637 0.81569 1.02494 1.00422 1.48166 1.06104 1.07804 1.71670 1.19288 0.92583 0.77979 0.97478 1.21447 1.36464 1.06231 0.92272 0.92540 1.24944 0.95394 0.96419 0.97419 1.69942 1.38404 1.14287 1.30645 0.86448 0.78102 0.78317 0.84569 1.19872 1.20961 1.20846 1.20080 0.88232 0.84627 0.77917 1.90630 1.13611 1.86751 1.49111 1.22059 0.94198 0.90671 1.02376 1.61828 1.25389 1.01431 1.35580 1.23005 0.97028 1.02245 0.89330 1.22693 0.93814 0.82243 1.02050 1.87942 1.65748 1.35936 1.40459 1.20803 0.92096 0.90361 0.88779 0.90226 1.19671 0.99682 0.96134 0.93538 1.20916 0.94386 0.93190 0.99550 1.21186 1.02697 0.97540 0.96115 1.17782 0.97058 0.82738 0.94658 1.91501 1.79892 1.44038 1.96606 1.21090 1.01523 0.96419 0.98312 1.20850 0.97358 0.94356 0.97015 1.22766 0.95727 0.89275 1.02065 0.93679 0.90699 0.92727 0.95029 0.93762 0.92746 0.88448 0.92350 0.94596 0.86797 0.91744 0.88165 0.84425 0.84679 0.84545 0.84588 0.89554 0.93868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.26 10.24 59.84 0.61 1.87 16 2 N -0.60 -12.45 2.86 -182.96 -0.52 -12.98 16 3 C 0.25 6.33 5.16 -5.19 -0.03 6.30 16 4 C -0.53 -14.65 9.39 -34.44 -0.32 -14.97 16 5 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 6 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 7 N -0.89 -26.31 13.29 55.43 0.74 -25.58 16 8 Si 0.90 21.60 29.54 -169.99 -5.02 16.57 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 C 0.51 10.12 7.38 -10.98 -0.08 10.04 16 13 O -0.52 -12.64 13.93 5.56 0.08 -12.56 16 14 C 0.04 0.55 4.00 -4.97 -0.02 0.53 16 15 N -0.52 -7.32 4.46 -235.75 -1.05 -8.37 16 16 C 0.01 0.17 5.29 -3.71 -0.02 0.15 16 17 C 0.07 0.85 7.01 37.21 0.26 1.11 16 18 O -0.38 -4.61 9.62 -35.23 -0.34 -4.95 16 19 C 0.14 1.46 3.01 -27.83 -0.08 1.38 16 20 H 0.08 0.85 8.05 -51.93 -0.42 0.43 16 21 C -0.09 -0.83 5.01 -104.62 -0.52 -1.36 16 22 C -0.06 -0.57 9.35 -39.59 -0.37 -0.94 16 23 C -0.16 -1.34 10.03 -39.52 -0.40 -1.74 16 24 C 0.10 0.88 7.30 -39.42 -0.29 0.59 16 25 F -0.14 -1.39 17.27 2.25 0.04 -1.35 16 26 C -0.15 -1.23 10.03 -39.52 -0.40 -1.62 16 27 C -0.08 -0.62 9.68 -39.60 -0.38 -1.00 16 28 C 0.03 0.33 4.91 -3.71 -0.02 0.31 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 31 H 0.05 0.67 6.44 -51.93 -0.33 0.33 16 32 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 33 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.10 1.18 8.00 -51.93 -0.42 0.76 16 36 H 0.06 0.77 7.38 -51.93 -0.38 0.39 16 37 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.11 2.03 5.88 -51.93 -0.31 1.73 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.14 1.22 7.63 -52.49 -0.40 0.82 16 42 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 44 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 45 H 0.09 0.82 8.09 -51.93 -0.42 0.40 16 46 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 381.56 15.07 5.75 5.75 Total: -1.00 -32.96 381.56 -9.31 -42.27 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -6.83 Total: -1.07 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -2.15 Total: 2.25 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: -0.84 Total: -46.93 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.26 Total: -17.51 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.96 -9.31 -42.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023057528.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.644 kcal (2) G-P(sol) polarization free energy of solvation -32.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds