Wall clock time and date at job start Tue Mar 31 2020 05:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86809 * 119.99692 * 2 1 4 4 H 1.48502 * 109.46989 * 239.99740 * 3 2 1 5 5 H 1.48499 * 109.47086 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47006 * 119.99706 * 3 2 1 7 7 C 1.38626 * 120.00628 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00591 * 180.02562 * 7 2 1 9 9 O 1.34815 * 119.99737 * 0.02562 * 7 2 1 10 10 C 1.35776 * 117.00426 * 185.36370 * 9 7 2 11 11 C 1.38915 * 119.99485 * 5.60503 * 10 9 7 12 12 C 1.37999 * 120.00053 * 180.02562 * 11 10 9 13 13 C 1.38917 * 120.00174 * 0.02562 * 12 11 10 14 14 N 1.39992 * 120.00331 * 179.72394 * 13 12 11 15 15 C 1.34781 * 119.99774 * 145.30295 * 14 13 12 16 16 O 1.21287 * 120.00461 * 354.54979 * 15 14 13 17 17 C 1.50707 * 119.99575 * 174.55409 * 15 14 13 18 18 C 1.50694 * 109.46829 * 179.97438 * 17 15 14 19 19 C 1.34240 * 126.50496 * 264.68715 * 18 17 15 20 20 N 1.36833 * 109.93207 * 179.83402 * 19 18 17 21 21 H 0.97005 * 125.05887 * 180.18600 * 20 19 18 22 22 C 1.37683 * 109.87228 * 0.44454 * 20 19 18 23 23 C 1.39132 * 133.50775 * 179.71292 * 22 20 19 24 24 C 1.37746 * 119.77889 * 180.02562 * 23 22 20 25 25 C 1.38833 * 120.66848 * 0.02562 * 24 23 22 26 26 C 1.36629 * 120.52716 * 359.97438 * 25 24 23 27 27 C 1.39634 * 119.76251 * 0.02562 * 26 25 24 28 28 C 1.38928 * 119.99632 * 0.02562 * 13 12 11 29 29 C 1.38002 * 119.99471 * 0.02562 * 28 13 12 30 30 H 0.96994 * 120.00096 * 0.02562 * 1 2 3 31 31 H 1.07998 * 119.99879 * 359.97438 * 11 10 9 32 32 H 1.07996 * 119.99883 * 179.97438 * 12 11 10 33 33 H 0.96998 * 119.99805 * 325.29262 * 14 13 12 34 34 H 1.08999 * 109.46867 * 299.99337 * 17 15 14 35 35 H 1.08999 * 109.46845 * 59.99753 * 17 15 14 36 36 H 1.08005 * 125.03322 * 359.97438 * 19 18 17 37 37 H 1.08001 * 120.10572 * 0.02562 * 23 22 20 38 38 H 1.07996 * 119.66366 * 180.02562 * 24 23 22 39 39 H 1.07992 * 119.73812 * 180.02562 * 25 24 23 40 40 H 1.07998 * 120.11866 * 179.97438 * 26 25 24 41 41 H 1.07993 * 120.00393 * 179.97438 * 28 13 12 42 42 H 1.08004 * 119.99748 * 179.97438 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6179 0.0000 4 1 3.1035 1.6965 -1.2125 5 1 1.2847 2.7465 -0.0006 6 1 3.1034 1.6966 1.2125 7 6 2.0090 -1.2005 0.0005 8 1 3.0890 -1.2005 0.0010 9 8 1.3350 -2.3680 0.0005 10 6 2.0699 -3.5041 0.1142 11 6 3.4383 -3.4263 0.3403 12 6 4.1854 -4.5809 0.4553 13 6 3.5691 -5.8209 0.3443 14 7 4.3279 -6.9921 0.4552 15 6 3.7956 -8.0878 1.0322 16 8 2.6972 -8.0311 1.5434 17 6 4.5655 -9.3834 1.0421 18 6 3.7555 -10.4435 1.7428 19 6 3.8496 -10.7968 3.0345 20 7 2.9529 -11.7923 3.3123 21 1 2.8338 -12.2087 4.1803 22 6 2.2488 -12.1187 2.1750 23 6 1.2458 -13.0434 1.9018 24 6 0.7281 -13.1351 0.6286 25 6 1.1974 -12.3136 -0.3875 26 6 2.1818 -11.3986 -0.1413 27 6 2.7208 -11.2888 1.1421 28 6 2.2007 -5.8987 0.1171 29 6 1.4540 -4.7440 0.0011 30 1 -0.4850 0.8400 -0.0004 31 1 3.9176 -2.4623 0.4253 32 1 5.2493 -4.5204 0.6307 33 1 5.2366 -7.0152 0.1167 34 1 4.7641 -9.6958 0.0169 35 1 5.5095 -9.2409 1.5681 36 1 4.5306 -10.3585 3.7491 37 1 0.8744 -13.6872 2.6854 38 1 -0.0507 -13.8532 0.4187 39 1 0.7806 -12.3979 -1.3801 40 1 2.5422 -10.7632 -0.9367 41 1 1.7216 -6.8626 0.0304 42 1 0.3902 -4.8043 -0.1760 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023150583.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:20 Heat of formation + Delta-G solvation = 26.798832 kcal Electronic energy + Delta-G solvation = -26696.119716 eV Core-core repulsion = 22800.418324 eV Total energy + Delta-G solvation = -3895.701392 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.126 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.43544 -39.91550 -38.57863 -37.03656 -36.42838 -33.85758 -33.19521 -32.15009 -30.45146 -30.18011 -29.41510 -28.26922 -26.74303 -25.24821 -22.97944 -22.31419 -21.89943 -21.76190 -20.29892 -19.41023 -18.04361 -17.96747 -17.21516 -16.94735 -16.54849 -16.18447 -15.61621 -15.07770 -14.63262 -14.54123 -14.32773 -14.14869 -13.91111 -13.77920 -13.55998 -13.42423 -13.07001 -12.76352 -12.72101 -12.49693 -12.16259 -11.78942 -11.76084 -11.57717 -11.52653 -11.43882 -11.02004 -10.94183 -10.66106 -10.43548 -9.85163 -9.63932 -9.49625 -9.18568 -8.67544 -8.32210 -8.16926 -7.78608 -6.87891 -6.41670 -3.99800 1.01681 1.53303 2.14689 2.23978 2.46454 2.96454 2.97694 3.14605 3.16807 3.18595 3.51086 3.85214 3.99097 4.55201 4.60606 4.62467 4.75286 4.94931 5.00895 5.06681 5.13153 5.18024 5.33147 5.35159 5.39566 5.54337 5.59511 5.68985 5.75514 5.82399 5.98814 6.19093 6.28068 6.33089 6.35203 6.50124 6.56053 6.63753 6.83587 6.90269 7.03501 7.04914 7.20430 7.25452 7.36134 7.44633 7.79442 7.84133 8.02669 8.50467 9.03502 9.74785 10.76374 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.023320 B = 0.002076 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.396875 B =13482.986459 C =14032.450462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.177 6.177 10 C 0.146 3.854 11 C -0.220 4.220 12 C -0.092 4.092 13 C 0.040 3.960 14 N -0.666 5.666 15 C 0.502 3.498 16 O -0.514 6.514 17 C -0.063 4.063 18 C -0.151 4.151 19 C 0.064 3.936 20 N -0.595 5.595 21 H 0.415 0.585 22 C 0.095 3.905 23 C -0.132 4.132 24 C -0.101 4.101 25 C -0.148 4.148 26 C -0.067 4.067 27 C -0.089 4.089 28 C -0.066 4.066 29 C -0.178 4.178 30 H 0.270 0.730 31 H 0.131 0.869 32 H 0.110 0.890 33 H 0.400 0.600 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.168 0.832 37 H 0.117 0.883 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.669 -24.546 2.831 26.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.108 0.892 9 O -0.081 6.081 10 C 0.092 3.908 11 C -0.239 4.239 12 C -0.112 4.112 13 C -0.052 4.052 14 N -0.312 5.312 15 C 0.289 3.711 16 O -0.388 6.388 17 C -0.103 4.103 18 C -0.159 4.159 19 C -0.063 4.063 20 N -0.197 5.197 21 H 0.251 0.749 22 C -0.012 4.012 23 C -0.153 4.153 24 C -0.121 4.121 25 C -0.167 4.167 26 C -0.085 4.085 27 C -0.093 4.093 28 C -0.086 4.086 29 C -0.197 4.197 30 H 0.080 0.920 31 H 0.148 0.852 32 H 0.128 0.872 33 H 0.235 0.765 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.186 0.814 37 H 0.135 0.865 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.140 0.860 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.429 -24.358 3.306 26.328 hybrid contribution 0.928 0.737 0.402 1.251 sum 10.357 -23.621 3.707 26.057 Atomic orbital electron populations 1.70038 1.05941 1.27736 1.46047 1.25284 0.95838 0.98815 0.96641 0.85792 0.78691 0.79867 0.79123 1.19520 1.20314 1.19548 1.21251 0.91707 0.80928 1.52862 0.89187 1.84004 1.34139 1.11386 1.78538 1.19412 0.90332 0.88034 0.93019 1.20976 0.94123 0.98371 1.10470 1.20480 0.98684 0.90909 1.01142 1.17236 0.91623 0.84778 1.11583 1.43306 1.17051 1.10935 1.59904 1.20736 0.87388 0.84939 0.78062 1.90742 1.20534 1.84374 1.43172 1.19916 0.97825 0.90199 1.02402 1.19508 1.01867 1.00980 0.93546 1.21528 0.95741 0.92459 0.96545 1.41653 1.33533 1.34230 1.10319 0.74856 1.18228 0.97048 0.99219 0.86681 1.19992 0.97815 0.99778 0.97697 1.20777 0.99644 0.99480 0.92156 1.20620 0.98889 0.97787 0.99385 1.20268 0.95926 0.97460 0.94881 1.18982 0.98823 0.98032 0.93504 1.20576 0.92274 0.97762 0.98026 1.20123 0.99998 0.89603 1.10023 0.91987 0.85176 0.87205 0.76533 0.88213 0.88347 0.81430 0.86482 0.85931 0.86113 0.86318 0.85979 0.86207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.59 13.67 55.48 0.76 -24.83 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.57 29.55 -169.99 -5.02 15.55 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.39 -10.99 9.44 30.88 0.29 -10.70 16 8 H 0.09 2.31 5.28 -52.49 -0.28 2.04 16 9 O -0.18 -5.14 9.75 0.01 0.00 -5.14 16 10 C 0.15 3.61 6.65 -39.08 -0.26 3.35 16 11 C -0.22 -4.77 9.13 -39.42 -0.36 -5.13 16 12 C -0.09 -1.67 9.96 -39.42 -0.39 -2.06 16 13 C 0.04 0.72 6.25 -83.62 -0.52 0.20 16 14 N -0.67 -8.95 5.34 -9.82 -0.05 -9.00 16 15 C 0.50 7.01 7.55 -10.98 -0.08 6.93 16 16 O -0.51 -9.66 13.84 5.55 0.08 -9.59 16 17 C -0.06 -0.59 6.23 -29.03 -0.18 -0.77 16 18 C -0.15 -1.72 4.81 -102.71 -0.49 -2.21 16 19 C 0.06 0.61 11.73 -16.73 -0.20 0.41 16 20 N -0.59 -5.42 6.07 -10.65 -0.06 -5.48 16 21 H 0.41 2.41 8.96 -40.82 -0.37 2.05 16 22 C 0.09 1.08 7.28 -83.99 -0.61 0.47 16 23 C -0.13 -1.32 10.08 -39.43 -0.40 -1.72 16 24 C -0.10 -0.98 10.01 -39.54 -0.40 -1.37 16 25 C -0.15 -1.54 9.97 -39.94 -0.40 -1.94 16 26 C -0.07 -0.79 10.05 -39.64 -0.40 -1.19 16 27 C -0.09 -1.12 6.35 -105.14 -0.67 -1.79 16 28 C -0.07 -1.34 8.65 -39.41 -0.34 -1.68 16 29 C -0.18 -4.01 9.98 -39.42 -0.39 -4.41 16 30 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.13 2.79 5.70 -52.49 -0.30 2.49 16 32 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.40 3.74 8.82 -40.82 -0.36 3.38 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.17 1.07 8.06 -52.48 -0.42 0.65 16 37 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 40 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 41 H 0.12 2.44 6.53 -52.49 -0.34 2.09 16 42 H 0.12 2.64 8.06 -52.48 -0.42 2.22 16 LS Contribution 365.46 15.07 5.51 5.51 Total: -1.00 -36.53 365.46 -9.28 -45.81 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -4.59 Total: 9.82 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -5.90 Total: -22.64 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.64 Total: -39.31 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: 0.08 Total: -14.73 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.53 -9.28 -45.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023150583.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.608 kcal (2) G-P(sol) polarization free energy of solvation -36.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds