Wall clock time and date at job start Tue Mar 31 2020 05:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00345 * 2 1 4 4 H 1.48498 * 109.47203 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46941 * 300.00310 * 3 2 1 6 6 H 1.48503 * 109.47003 * 60.00065 * 3 2 1 7 7 C 1.37883 * 119.99456 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99425 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00325 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47005 * 184.82703 * 9 7 2 11 11 C 1.46851 * 110.99942 * 64.55605 * 10 9 7 12 12 C 1.53038 * 109.51268 * 174.16506 * 11 10 9 13 13 C 1.53094 * 109.29031 * 59.18090 * 12 11 10 14 14 C 1.50698 * 109.52431 * 182.43171 * 13 12 11 15 15 N 1.27938 * 124.23542 * 59.38380 * 14 13 12 16 16 C 1.34669 * 117.83926 * 179.77057 * 15 14 13 17 17 C 1.40983 * 129.63357 * 180.18818 * 16 15 14 18 18 C 1.37261 * 120.30058 * 180.32821 * 17 16 15 19 19 Cl 1.73600 * 119.70411 * 180.02562 * 18 17 16 20 20 C 1.38916 * 120.60076 * 359.97438 * 18 17 16 21 21 C 1.37611 * 120.06596 * 0.02562 * 20 18 17 22 22 C 1.39324 * 120.11891 * 359.97438 * 21 20 18 23 23 S 1.70645 * 124.24438 * 239.68158 * 14 13 12 24 24 C 1.53117 * 109.15956 * 302.34148 * 13 12 11 25 25 C 1.46848 * 111.00175 * 300.34345 * 10 9 7 26 26 H 0.97002 * 119.99884 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46665 * 64.82919 * 9 7 2 28 28 H 1.08998 * 109.47158 * 304.83102 * 9 7 2 29 29 H 1.08997 * 109.45881 * 294.17027 * 11 10 9 30 30 H 1.08999 * 109.45893 * 54.15268 * 11 10 9 31 31 H 1.08996 * 109.50031 * 179.11256 * 12 11 10 32 32 H 1.09005 * 109.50409 * 299.23204 * 12 11 10 33 33 H 1.09002 * 109.52714 * 62.24282 * 13 12 11 34 34 H 1.07999 * 119.85045 * 0.30433 * 17 16 15 35 35 H 1.08002 * 119.96580 * 180.02562 * 20 18 17 36 36 H 1.07992 * 119.93983 * 180.02562 * 21 20 18 37 37 H 1.09010 * 109.49701 * 297.71265 * 24 13 12 38 38 H 1.08994 * 109.50267 * 177.59883 * 24 13 12 39 39 H 1.09002 * 109.46390 * 305.85519 * 25 10 9 40 40 H 1.09004 * 109.46247 * 65.83203 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2012 -3.6133 0.1177 11 6 2.8980 -3.5770 1.4098 12 6 3.7684 -4.8271 1.5566 13 6 4.7820 -4.8751 0.4103 14 6 5.6025 -6.1348 0.5158 15 7 5.1133 -7.3167 0.4895 16 6 5.9673 -8.3531 0.5894 17 6 5.7049 -9.7383 0.5848 18 6 6.7339 -10.6385 0.7066 19 17 6.3932 -12.3407 0.6983 20 6 8.0457 -10.1999 0.8353 21 6 8.3245 -8.8523 0.8423 22 6 7.2927 -7.9242 0.7197 23 16 7.2995 -6.1634 0.6926 24 6 4.0320 -4.8632 -0.9246 25 6 3.1540 -3.6121 -0.9997 26 1 -0.4850 0.8401 0.0004 27 1 0.6911 -2.5954 -0.9298 28 1 0.5606 -2.5202 0.8438 29 1 3.5276 -2.6885 1.4580 30 1 2.1657 -3.5475 2.2166 31 1 4.2976 -4.7923 2.5088 32 1 3.1379 -5.7157 1.5222 33 1 5.4379 -4.0064 0.4672 34 1 4.6896 -10.0927 0.4853 35 1 8.8475 -10.9172 0.9301 36 1 9.3451 -8.5136 0.9421 37 1 3.4056 -5.7523 -0.9979 38 1 4.7495 -4.8542 -1.7450 39 1 2.6077 -3.6079 -1.9429 40 1 3.7825 -2.7234 -0.9401 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025033317.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:46 Heat of formation + Delta-G solvation = 41.170996 kcal Electronic energy + Delta-G solvation = -23292.577885 eV Core-core repulsion = 19837.819739 eV Total energy + Delta-G solvation = -3454.758147 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 336.076 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.73455 -38.74249 -37.49163 -36.40470 -33.93284 -32.13126 -31.37356 -30.32675 -29.73203 -27.14988 -25.27440 -23.91593 -22.94740 -22.53634 -22.00994 -20.52418 -19.18252 -18.78294 -16.92468 -16.39065 -16.20299 -15.94143 -15.16841 -15.13360 -14.44356 -14.33936 -14.21406 -14.09309 -13.56567 -13.40066 -13.15507 -12.86023 -12.82883 -12.43817 -11.95599 -11.83752 -11.56300 -11.52394 -11.25357 -11.10238 -11.01566 -10.64254 -10.59765 -10.49739 -10.41941 -10.26860 -9.94912 -9.91529 -9.68375 -9.43480 -8.86036 -8.45443 -8.42648 -7.17644 -6.04474 -4.14064 0.08594 0.56528 0.95039 1.46697 1.67489 2.01664 3.21237 3.24170 3.32663 3.34994 3.66680 4.18715 4.38103 4.51796 4.66987 4.73776 4.88475 4.97912 5.10240 5.17401 5.25973 5.33102 5.47107 5.54420 5.69386 5.75833 5.78192 5.98156 6.02554 6.06658 6.08975 6.20279 6.34199 6.49879 6.62256 6.73229 6.85624 7.28618 7.42918 7.51561 7.88302 8.04894 8.26573 8.30912 8.96840 9.52988 11.00321 Molecular weight = 336.08amu Principal moments of inertia in cm(-1) A = 0.028120 B = 0.002282 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.498210 B =12268.378110 C =12925.610556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.064 3.936 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.549 4.549 8 H 0.057 0.943 9 C 0.186 3.814 10 N -0.541 5.541 11 C 0.066 3.934 12 C -0.101 4.101 13 C -0.017 4.017 14 C 0.127 3.873 15 N -0.463 5.463 16 C 0.104 3.896 17 C -0.058 4.058 18 C -0.023 4.023 19 Cl -0.060 7.060 20 C -0.104 4.104 21 C -0.053 4.053 22 C -0.192 4.192 23 S 0.102 5.898 24 C -0.102 4.102 25 C 0.065 3.935 26 H 0.262 0.738 27 H 0.029 0.971 28 H 0.034 0.966 29 H 0.039 0.961 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.146 0.854 35 H 0.144 0.856 36 H 0.139 0.861 37 H 0.078 0.922 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.746 -19.757 1.959 26.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.588 4.588 8 H 0.076 0.924 9 C 0.061 3.939 10 N -0.265 5.265 11 C -0.063 4.063 12 C -0.141 4.141 13 C -0.039 4.039 14 C -0.157 4.157 15 N -0.175 5.175 16 C -0.018 4.018 17 C -0.079 4.079 18 C -0.053 4.053 19 Cl -0.031 7.031 20 C -0.126 4.126 21 C -0.076 4.076 22 C -0.311 4.311 23 S 0.361 5.639 24 C -0.141 4.141 25 C -0.064 4.064 26 H 0.071 0.929 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.164 0.836 35 H 0.162 0.838 36 H 0.157 0.843 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 17.458 -19.463 1.948 26.218 hybrid contribution 0.669 0.771 0.023 1.021 sum 18.127 -18.692 1.972 26.113 Atomic orbital electron populations 1.69954 1.06008 1.26719 1.50169 1.24976 0.94763 0.99149 0.94961 0.86607 0.80083 0.84037 0.77681 1.19884 1.20954 1.20957 1.21795 0.93340 0.92101 1.51594 0.92440 1.19753 0.90864 0.85374 0.97917 1.62447 1.16839 1.46727 1.00496 1.21837 0.96347 0.94662 0.93459 1.21673 0.96346 1.00913 0.95162 1.20218 0.95480 0.88951 0.99297 1.27140 0.94624 0.97074 0.96880 1.66155 1.36373 0.97595 1.17358 1.18995 0.87094 0.93557 1.02145 1.20410 0.99733 0.88635 0.99132 1.20483 0.94315 0.85392 1.05087 1.98389 1.95535 1.12230 1.96928 1.20941 0.95078 0.95448 1.01131 1.20239 0.97821 0.90912 0.98632 1.23993 0.98520 0.97973 1.10650 1.84107 1.08316 0.98671 1.72790 1.21680 0.98039 1.00931 0.93463 1.21850 0.94165 0.94693 0.95679 0.92853 0.95317 0.94740 0.94278 0.91165 0.92320 0.90348 0.89222 0.83619 0.83838 0.84324 0.90372 0.92323 0.91155 0.94210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.84 13.29 55.43 0.74 -25.10 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.55 -14.65 7.73 -34.44 -0.27 -14.92 16 8 H 0.06 1.51 5.85 -52.48 -0.31 1.20 16 9 C 0.19 4.70 5.12 -4.98 -0.03 4.67 16 10 N -0.54 -11.26 4.86 -236.11 -1.15 -12.41 16 11 C 0.07 1.23 5.12 -3.83 -0.02 1.21 16 12 C -0.10 -1.54 5.34 -26.66 -0.14 -1.68 16 13 C -0.02 -0.24 2.68 -91.66 -0.25 -0.49 16 14 C 0.13 1.70 5.83 -13.90 -0.08 1.61 16 15 N -0.46 -6.62 10.51 -9.08 -0.10 -6.72 16 16 C 0.10 1.32 6.99 -84.96 -0.59 0.72 16 17 C -0.06 -0.63 9.86 -38.90 -0.38 -1.01 16 18 C -0.02 -0.21 6.30 -39.69 -0.25 -0.46 16 19 Cl -0.06 -0.49 28.93 -51.86 -1.50 -1.99 16 20 C -0.10 -0.81 9.82 -39.56 -0.39 -1.19 16 21 C -0.05 -0.45 10.06 -39.41 -0.40 -0.85 16 22 C -0.19 -2.14 6.55 -38.55 -0.25 -2.39 16 23 S 0.10 1.12 23.08 -107.50 -2.48 -1.36 16 24 C -0.10 -1.54 5.35 -26.66 -0.14 -1.68 16 25 C 0.06 1.21 5.04 -3.84 -0.02 1.19 16 26 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.03 0.94 8.09 -51.93 -0.42 0.52 16 29 H 0.04 0.77 7.04 -51.93 -0.37 0.41 16 30 H 0.07 1.34 8.08 -51.93 -0.42 0.92 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.09 1.19 8.11 -51.93 -0.42 0.77 16 34 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 36 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 37 H 0.08 1.26 8.14 -51.92 -0.42 0.84 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 1.33 8.12 -51.93 -0.42 0.91 16 40 H 0.04 0.79 6.57 -51.93 -0.34 0.44 16 LS Contribution 353.81 15.07 5.33 5.33 Total: -1.00 -29.14 353.81 -12.69 -41.83 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -5.21 Total: -1.97 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: -3.30 Total: -13.60 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: -0.51 Total: -44.22 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.48 Total: -1.36 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.50 Total: -1.99 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.14 -12.69 -41.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025033317.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.002 kcal (2) G-P(sol) polarization free energy of solvation -29.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds