Wall clock time and date at job start Tue Mar 31 2020 05:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35711 * 116.99583 * 2 1 4 4 C 1.39001 * 119.90412 * 179.97438 * 3 2 1 5 5 C 1.37700 * 120.08761 * 180.02562 * 4 3 2 6 6 C 1.39751 * 119.91005 * 359.97438 * 5 4 3 7 7 C 1.47555 * 120.09091 * 179.97438 * 6 5 4 8 8 O 1.21594 * 120.00133 * 359.97438 * 7 6 5 9 9 N 1.34783 * 120.00017 * 179.97438 * 7 6 5 10 10 C 1.38918 * 119.99891 * 179.97438 * 9 7 6 11 11 N 1.30200 * 126.08874 * 0.02562 * 10 9 7 12 12 N 1.26098 * 117.73348 * 179.74287 * 11 10 9 13 13 C 1.30300 * 117.69514 * 0.47594 * 12 11 10 14 14 S 1.76197 * 126.09486 * 179.82517 * 13 12 11 15 15 C 1.76199 * 100.00148 * 359.69312 * 14 13 12 16 16 H 1.07999 * 119.99976 * 0.02562 * 15 14 13 17 17 C 1.38579 * 119.99706 * 179.97438 * 15 14 13 18 18 N 1.31697 * 120.00227 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99516 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47364 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46997 * 120.00535 * 19 17 15 22 22 H 1.48500 * 109.47233 * 240.00138 * 19 17 15 23 23 S 1.76481 * 126.08232 * 179.97438 * 10 9 7 24 24 C 1.39759 * 119.82023 * 0.25133 * 6 5 4 25 25 C 1.37697 * 119.90877 * 359.53487 * 24 6 5 26 26 H 1.08998 * 109.46710 * 299.99359 * 1 2 3 27 27 H 1.08999 * 109.46916 * 59.99616 * 1 2 3 28 28 H 1.09000 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.08000 * 119.95905 * 0.02562 * 4 3 2 30 30 H 1.08001 * 120.04724 * 179.97438 * 5 4 3 31 31 H 0.97001 * 119.99853 * 0.02562 * 9 7 6 32 32 H 0.96996 * 119.99711 * 179.97438 * 18 17 15 33 33 H 1.08000 * 120.04723 * 179.74837 * 24 6 5 34 34 H 1.07992 * 119.95899 * 180.21203 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4333 1.2798 0.0005 5 6 4.0623 2.5047 0.0011 6 6 3.3030 3.6780 0.0005 7 6 3.9728 4.9927 0.0017 8 8 5.1871 5.0564 0.0036 9 7 3.2387 6.1231 0.0006 10 6 3.8694 7.3608 0.0022 11 7 5.1551 7.5665 0.0043 12 7 5.5582 8.7613 0.0005 13 6 4.6586 9.7040 0.0044 14 16 4.9720 11.4378 0.0048 15 6 6.7340 11.4303 0.0081 16 1 7.2700 10.4927 0.0087 17 6 7.4320 12.6275 0.0087 18 7 6.7783 13.7708 0.0074 19 14 9.2999 12.6195 0.0129 20 1 9.7890 11.2173 0.0144 21 1 9.8006 13.3166 -1.1990 22 1 9.7953 13.3183 1.2260 23 16 3.0704 8.9344 0.0006 24 6 1.9074 3.6026 0.0048 25 6 1.2862 2.3738 -0.0002 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 4.0194 0.3726 0.0005 30 1 5.1410 2.5588 0.0019 31 1 2.2701 6.0723 -0.0005 32 1 7.2669 14.6088 0.0082 33 1 1.3171 4.5070 0.0085 34 1 0.2079 2.3146 -0.0004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027740060.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:18 Heat of formation + Delta-G solvation = 25.001069 kcal Electronic energy + Delta-G solvation = -22115.212973 eV Core-core repulsion = 18460.538346 eV Total energy + Delta-G solvation = -3654.674626 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 337.034 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.88140 -40.19826 -39.27784 -37.36566 -35.02541 -32.87083 -31.71534 -30.93270 -29.62238 -27.93675 -25.94689 -25.64500 -23.88168 -22.98184 -21.74287 -19.55924 -19.51930 -18.70980 -18.11020 -17.23958 -16.97132 -16.39487 -16.25817 -15.52526 -15.36435 -15.09217 -14.65500 -14.52997 -14.30225 -14.07932 -13.82412 -13.14681 -13.01833 -13.01797 -12.76217 -12.35625 -11.62187 -11.43267 -11.31012 -11.30093 -11.20184 -11.10301 -10.44648 -10.18970 -9.70080 -9.58852 -9.53150 -9.50259 -9.13119 -8.91276 -8.71823 -8.48480 -6.91895 -6.66184 -4.36468 0.50653 0.91510 1.13011 1.16267 1.81777 2.65365 2.67973 2.74465 3.10294 3.11136 3.17521 3.28834 3.41775 3.67865 3.89217 4.22116 4.35682 4.42760 4.57363 4.64941 4.80514 4.80769 4.87522 4.95192 4.99387 5.20541 5.48958 5.54259 5.68477 5.80278 5.88814 6.00986 6.22671 6.41557 6.85020 7.17123 7.40184 8.07605 8.22292 8.86297 9.53945 10.40402 Molecular weight = 337.03amu Principal moments of inertia in cm(-1) A = 0.031942 B = 0.002136 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.389500 B =13104.845928 C =13966.088017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.314 6.314 3 C 0.152 3.848 4 C -0.158 4.158 5 C -0.016 4.016 6 C -0.164 4.164 7 C 0.552 3.448 8 O -0.474 6.474 9 N -0.620 5.620 10 C 0.187 3.813 11 N -0.231 5.231 12 N -0.278 5.278 13 C 0.000 4.000 14 S 0.213 5.787 15 C -0.540 4.540 16 H 0.111 0.889 17 C 0.078 3.922 18 N -0.868 5.868 19 Si 0.935 3.065 20 H -0.262 1.262 21 H -0.276 1.276 22 H -0.275 1.275 23 S 0.020 5.980 24 C -0.045 4.045 25 C -0.216 4.216 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.102 0.898 29 H 0.140 0.860 30 H 0.147 0.853 31 H 0.415 0.585 32 H 0.278 0.722 33 H 0.129 0.871 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.391 -21.240 -0.011 26.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.226 6.226 3 C 0.106 3.894 4 C -0.177 4.177 5 C -0.035 4.035 6 C -0.168 4.168 7 C 0.337 3.663 8 O -0.344 6.344 9 N -0.273 5.273 10 C -0.190 4.190 11 N -0.074 5.074 12 N -0.125 5.125 13 C -0.383 4.383 14 S 0.451 5.549 15 C -0.690 4.690 16 H 0.129 0.871 17 C -0.133 4.133 18 N -0.501 5.501 19 Si 0.759 3.241 20 H -0.185 1.185 21 H -0.201 1.201 22 H -0.201 1.201 23 S 0.255 5.745 24 C -0.064 4.064 25 C -0.234 4.234 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.120 0.880 29 H 0.158 0.842 30 H 0.165 0.835 31 H 0.253 0.747 32 H 0.088 0.912 33 H 0.147 0.853 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.839 -20.249 -0.016 25.708 hybrid contribution 0.824 -0.801 0.006 1.149 sum -15.014 -21.050 -0.010 25.856 Atomic orbital electron populations 1.23141 0.77909 1.04317 1.01696 1.86060 1.21825 1.26857 1.87886 1.19326 0.92459 0.84237 0.93420 1.20434 0.91235 0.98781 1.07229 1.21130 1.01048 0.89710 0.91574 1.19712 0.93551 0.92957 1.10613 1.18304 0.87308 0.83159 0.77519 1.90941 1.12682 1.86165 1.44569 1.42407 1.09904 1.01524 1.73438 1.26212 0.91605 0.89342 1.11867 1.71240 1.08598 1.13361 1.14196 1.71654 1.26433 0.92131 1.22260 1.32340 0.90372 1.09460 1.06165 1.83488 1.10314 0.83119 1.77951 1.23572 0.89824 0.97677 1.57924 0.87063 1.25176 1.01345 0.94018 0.92775 1.69971 1.37213 0.97970 1.44991 0.85817 0.80774 0.79327 0.78133 1.18540 1.20102 1.20096 1.85095 1.11761 0.99607 1.78077 1.21088 0.93158 0.97620 0.94559 1.21150 1.00396 0.91905 1.09989 0.92289 0.92292 0.87977 0.84243 0.83507 0.74717 0.91185 0.85276 0.84667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 101.05 0.99 1.08 16 2 O -0.31 -2.42 10.48 -18.84 -0.20 -2.62 16 3 C 0.15 1.29 6.70 -39.02 -0.26 1.03 16 4 C -0.16 -1.42 9.97 -39.50 -0.39 -1.82 16 5 C -0.02 -0.17 9.58 -39.21 -0.38 -0.54 16 6 C -0.16 -1.86 5.87 -104.96 -0.62 -2.48 16 7 C 0.55 8.49 7.72 -12.46 -0.10 8.39 16 8 O -0.47 -9.55 15.04 5.28 0.08 -9.47 16 9 N -0.62 -8.89 5.35 -12.57 -0.07 -8.96 16 10 C 0.19 3.55 8.41 -86.96 -0.73 2.82 16 11 N -0.23 -5.48 9.78 31.03 0.30 -5.18 16 12 N -0.28 -7.05 10.37 31.31 0.32 -6.73 16 13 C 0.00 -0.01 7.83 52.11 0.41 0.40 16 14 S 0.21 5.18 21.89 -107.50 -2.35 2.82 16 15 C -0.54 -14.75 9.36 30.86 0.29 -14.46 16 16 H 0.11 3.17 6.91 -52.49 -0.36 2.81 16 17 C 0.08 2.06 5.49 -17.48 -0.10 1.96 16 18 N -0.87 -23.33 13.22 55.48 0.73 -22.60 16 19 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 20 H -0.26 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 23 S 0.02 0.36 23.53 -107.50 -2.53 -2.17 16 24 C -0.05 -0.37 9.53 -39.21 -0.37 -0.75 16 25 C -0.22 -1.57 9.01 -39.50 -0.36 -1.92 16 26 H 0.06 0.18 7.65 -51.93 -0.40 -0.22 16 27 H 0.06 0.17 7.65 -51.93 -0.40 -0.22 16 28 H 0.10 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.15 1.59 7.64 -52.49 -0.40 1.19 16 31 H 0.42 3.98 6.84 -40.82 -0.28 3.70 16 32 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 33 H 0.13 0.70 6.39 -52.49 -0.34 0.37 16 34 H 0.14 0.62 6.27 -52.49 -0.33 0.29 16 LS Contribution 333.71 15.07 5.03 5.03 Total: -1.00 -34.32 333.71 -7.80 -42.12 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: -2.48 Total: -1.77 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -1.61 Total: -6.27 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 1.29 Total: -43.46 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -0.12 Total: -12.09 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 5.54 SS G_CDS: -4.88 Total: 0.66 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.32 -7.80 -42.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027740060.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.121 kcal (2) G-P(sol) polarization free energy of solvation -34.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds