Wall clock time and date at job start Tue Mar 31 2020 05:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47177 * 2 1 4 4 N 1.46901 * 109.47098 * 119.99912 * 2 1 3 5 5 C 1.46895 * 111.00119 * 275.00178 * 4 2 1 6 6 C 1.52994 * 109.47270 * 179.97438 * 5 4 2 7 7 H 1.09009 * 109.47154 * 54.99975 * 6 5 4 8 8 C 1.47200 * 109.47451 * 295.00037 * 6 5 4 9 9 N 4.90935 * 82.27805 * 119.13685 * 2 1 3 10 10 C 1.52996 * 109.47347 * 174.99819 * 6 5 4 11 11 C 1.50702 * 109.47159 * 185.00014 * 10 6 5 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 6 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 6 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 C 1.50701 * 109.47018 * 240.00341 * 2 1 3 20 20 C 1.38261 * 119.99489 * 100.00348 * 19 2 1 21 21 C 1.38223 * 120.01943 * 179.97438 * 20 19 2 22 22 C 1.38239 * 120.00897 * 0.02562 * 21 20 19 23 23 C 1.38307 * 119.98873 * 359.97438 * 22 21 20 24 24 Br 1.89109 * 120.00877 * 180.02562 * 23 22 21 25 25 C 1.38199 * 119.99204 * 279.71751 * 19 2 1 26 26 H 1.08998 * 109.46661 * 60.00225 * 1 2 3 27 27 H 1.08995 * 109.46764 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47003 * 299.99920 * 1 2 3 29 29 H 1.00905 * 110.99468 * 38.95862 * 4 2 1 30 30 H 1.08998 * 109.47324 * 59.99878 * 5 4 2 31 31 H 1.09002 * 109.47421 * 300.00055 * 5 4 2 32 32 H 1.09004 * 109.47066 * 65.00217 * 10 6 5 33 33 H 1.08994 * 109.47405 * 305.00047 * 10 6 5 34 34 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 35 35 H 1.08000 * 119.99553 * 359.97076 * 20 19 2 36 36 H 1.07993 * 119.99313 * 180.02562 * 21 20 19 37 37 H 1.08001 * 120.00651 * 180.02562 * 22 21 20 38 38 H 1.07997 * 120.00502 * 0.02562 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 0.2226 2.3469 6 6 2.5950 -0.5332 3.5744 7 1 3.5507 -1.0020 3.3397 8 6 1.6208 -1.5689 3.9552 9 7 0.8704 -2.3687 4.2492 10 6 2.7789 0.4456 4.7359 11 6 3.3988 -0.2740 5.9059 12 1 3.6380 -1.3244 5.8288 13 6 3.6662 0.4100 7.0729 14 7 3.3752 1.6891 7.1668 15 14 4.4416 -0.4803 8.5205 16 1 5.7611 -1.0283 8.1155 17 1 4.6245 0.4709 9.6462 18 1 3.5552 -1.5913 8.9510 19 6 2.0324 -0.7103 -1.2305 20 6 2.4589 0.0198 -2.3244 21 6 2.9202 -0.6312 -3.4531 22 6 2.9548 -2.0127 -3.4888 23 6 2.5282 -2.7434 -2.3948 24 35 2.5760 -4.6333 -2.4428 25 6 2.0721 -2.0914 -1.2631 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.4496 -1.4980 1.4100 30 1 1.0871 0.6163 2.5525 31 1 2.7588 1.0462 2.1183 32 1 1.8092 0.8479 5.0291 33 1 3.4313 1.2611 4.4240 34 1 3.5630 2.1702 7.9879 35 1 2.4315 1.0991 -2.2971 36 1 3.2536 -0.0605 -4.3071 37 1 3.3156 -2.5213 -4.3706 38 1 1.7429 -2.6615 -0.4070 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028920332.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:20 Heat of formation + Delta-G solvation = 35.915685 kcal Electronic energy + Delta-G solvation = -19811.006317 eV Core-core repulsion = 16698.839726 eV Total energy + Delta-G solvation = -3112.166591 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 336.053 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.82719 -37.64830 -35.85932 -33.89781 -32.70797 -32.20183 -30.65552 -29.56880 -28.82410 -26.31122 -24.05504 -23.14481 -22.08896 -21.87561 -20.56850 -17.29949 -16.68890 -16.54643 -15.80498 -15.59471 -15.02501 -14.67654 -14.25910 -13.96062 -13.72591 -13.61266 -13.23417 -12.90509 -12.85899 -12.65985 -12.24700 -12.10596 -11.78747 -11.70973 -11.40863 -11.22669 -11.11163 -11.02933 -10.93832 -10.75096 -10.56676 -10.42626 -10.28706 -9.57944 -9.27298 -9.04150 -8.85964 -8.46693 -8.40562 -6.10836 -4.13984 0.91409 1.10923 1.46380 3.30872 3.34942 3.38416 3.40092 3.54402 3.60294 4.11577 4.40650 4.49870 4.61503 4.76901 4.84385 4.95621 5.03414 5.09733 5.23466 5.27262 5.42243 5.46769 5.49355 5.58341 5.72796 5.75420 5.95548 6.00976 6.08847 6.11688 6.26893 6.38395 6.52018 6.59784 7.02126 7.32059 7.41474 7.50660 7.84067 8.21597 8.37442 8.90291 9.51561 11.00000 Molecular weight = 336.05amu Principal moments of inertia in cm(-1) A = 0.016326 B = 0.002625 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.606226 B =10663.592999 C =11543.255651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.121 3.879 3 H 0.094 0.906 4 N -0.685 5.685 5 C 0.068 3.932 6 C 0.006 3.994 7 H 0.111 0.889 8 C 0.240 3.760 9 N -0.475 5.475 10 C 0.033 3.967 11 C -0.528 4.528 12 H 0.056 0.944 13 C 0.063 3.937 14 N -0.892 5.892 15 Si 0.892 3.108 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.277 1.277 19 C -0.056 4.056 20 C -0.101 4.101 21 C -0.115 4.115 22 C -0.099 4.099 23 C -0.089 4.089 24 Br -0.057 7.057 25 C -0.069 4.069 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.340 0.660 30 H 0.037 0.963 31 H 0.093 0.907 32 H 0.024 0.976 33 H 0.040 0.960 34 H 0.263 0.737 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.088 -4.160 -25.523 25.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.011 3.989 3 H 0.112 0.888 4 N -0.315 5.315 5 C -0.062 4.062 6 C -0.016 4.016 7 H 0.129 0.871 8 C -0.076 4.076 9 N -0.152 5.152 10 C -0.005 4.005 11 C -0.566 4.566 12 H 0.075 0.925 13 C -0.139 4.139 14 N -0.531 5.531 15 Si 0.719 3.281 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.203 1.203 19 C -0.057 4.057 20 C -0.119 4.119 21 C -0.134 4.134 22 C -0.119 4.119 23 C -0.169 4.169 24 Br 0.028 6.972 25 C -0.089 4.089 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.158 0.842 30 H 0.056 0.944 31 H 0.111 0.889 32 H 0.042 0.958 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.530 -5.848 -25.118 25.914 hybrid contribution -0.176 0.327 1.082 1.144 sum -2.706 -5.521 -24.036 24.810 Atomic orbital electron populations 1.22504 0.96049 1.02608 1.02723 1.20474 0.92802 0.97655 0.88016 0.88773 1.60689 1.57083 1.09964 1.03799 1.22127 1.00481 0.95212 0.88375 1.19337 0.93949 0.91999 0.96302 0.87090 1.29297 0.93353 0.93306 0.91692 1.81018 1.11970 1.11998 1.10237 1.19151 0.98250 0.93153 0.89964 1.21111 1.41375 0.96127 0.97950 0.92549 1.24947 0.95508 0.94822 0.98645 1.69927 1.47566 1.08049 1.27511 0.86653 0.79972 0.79511 0.81946 1.19985 1.21188 1.20261 1.19841 0.97854 0.92983 0.95070 1.21155 0.97707 1.00235 0.92835 1.21090 1.00055 0.93719 0.98511 1.21063 0.99310 0.94220 0.97302 1.21784 1.06971 0.90156 0.97968 1.96724 1.97902 1.03523 1.99029 1.20907 0.97541 0.94276 0.96161 0.91789 0.92295 0.91711 0.84169 0.94436 0.88885 0.95765 0.94202 0.92734 0.85396 0.85265 0.85362 0.85091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 9.14 37.16 0.34 -1.36 16 2 C 0.12 1.22 2.79 -68.86 -0.19 1.03 16 3 H 0.09 0.88 7.66 -51.93 -0.40 0.48 16 4 N -0.68 -8.46 5.69 -107.95 -0.61 -9.08 16 5 C 0.07 0.94 4.92 -3.83 -0.02 0.92 16 6 C 0.01 0.11 2.42 -93.41 -0.23 -0.12 16 7 H 0.11 1.93 8.14 -51.92 -0.42 1.51 16 8 C 0.24 4.75 12.97 -20.78 -0.27 4.48 16 9 N -0.48 -10.18 18.53 42.13 0.78 -9.40 16 10 C 0.03 0.76 4.42 -27.88 -0.12 0.64 16 11 C -0.53 -13.94 8.60 -34.44 -0.30 -14.24 16 12 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 13 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -25.36 13.29 55.43 0.74 -24.62 16 15 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 16 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 19 C -0.06 -0.57 4.96 -104.63 -0.52 -1.09 16 20 C -0.10 -0.87 9.67 -39.58 -0.38 -1.25 16 21 C -0.11 -0.93 10.05 -39.59 -0.40 -1.33 16 22 C -0.10 -0.90 9.79 -39.56 -0.39 -1.29 16 23 C -0.09 -0.95 6.22 -39.52 -0.25 -1.19 16 24 Br -0.06 -0.59 33.70 -68.01 -2.29 -2.89 16 25 C -0.07 -0.76 9.07 -39.56 -0.36 -1.12 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 28 H 0.06 0.64 7.45 -51.93 -0.39 0.26 16 29 H 0.34 4.41 6.89 -39.29 -0.27 4.14 16 30 H 0.04 0.52 7.43 -51.93 -0.39 0.13 16 31 H 0.09 1.20 8.06 -51.93 -0.42 0.78 16 32 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.13 0.85 8.04 -52.49 -0.42 0.43 16 36 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 37 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.13 1.51 7.24 -52.49 -0.38 1.13 16 LS Contribution 348.03 15.07 5.24 5.24 Total: -1.00 -29.43 348.03 -9.49 -38.92 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -5.15 Total: -0.13 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -3.17 Total: -14.30 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: 0.90 Total: -43.10 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 35 Polarization: -0.59 SS G_CDS: -2.29 Total: -2.89 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.43 -9.49 -38.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028920332.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.834 kcal (2) G-P(sol) polarization free energy of solvation -29.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds