Wall clock time and date at job start Tue Mar 31 2020 05:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 N 1.46899 * 109.47394 * 239.99962 * 2 1 3 5 5 C 1.46897 * 111.00355 * 84.99974 * 4 2 1 6 6 C 1.52994 * 109.47637 * 180.02562 * 5 4 2 7 7 H 1.09000 * 109.46747 * 54.99939 * 6 5 4 8 8 C 1.47206 * 109.46857 * 295.00236 * 6 5 4 9 9 N 4.90940 * 135.91566 * 247.76859 * 2 1 3 10 10 C 1.52996 * 109.47301 * 175.00191 * 6 5 4 11 11 C 1.50703 * 109.46950 * 184.99848 * 10 6 5 12 12 H 1.08002 * 119.99972 * 0.02562 * 11 10 6 13 13 C 1.37881 * 120.00014 * 179.97438 * 11 10 6 14 14 N 1.31506 * 120.00022 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 119.99895 * 0.02562 * 13 11 10 16 16 H 1.48494 * 109.47575 * 89.99250 * 15 13 11 17 17 H 1.48498 * 109.47102 * 209.99877 * 15 13 11 18 18 H 1.48508 * 109.46925 * 329.99311 * 15 13 11 19 19 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 20 20 C 1.38268 * 119.99307 * 79.72563 * 19 2 1 21 21 C 1.38224 * 120.01630 * 179.72896 * 20 19 2 22 22 C 1.38237 * 120.00895 * 0.54620 * 21 20 19 23 23 C 1.38300 * 119.99250 * 359.72538 * 22 21 20 24 24 Br 1.89101 * 120.01438 * 180.02562 * 23 22 21 25 25 C 1.38193 * 119.99547 * 260.00126 * 19 2 1 26 26 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 27 27 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 28 28 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.00901 * 110.99869 * 321.04664 * 4 2 1 30 30 H 1.09006 * 109.46948 * 300.00869 * 5 4 2 31 31 H 1.09006 * 109.47033 * 59.99701 * 5 4 2 32 32 H 1.09001 * 109.47026 * 305.00091 * 10 6 5 33 33 H 1.08998 * 109.47338 * 64.99846 * 10 6 5 34 34 H 0.97010 * 119.99905 * 180.02562 * 14 13 11 35 35 H 1.07996 * 119.99352 * 0.02562 * 20 19 2 36 36 H 1.07997 * 119.99399 * 180.27644 * 21 20 19 37 37 H 1.07996 * 120.00309 * 179.70865 * 22 21 20 38 38 H 1.07998 * 120.00472 * 0.02562 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0198 -0.6925 -1.1994 5 6 2.0826 0.2225 -2.3469 6 6 2.5952 -0.5332 -3.5744 7 1 1.9692 -1.4081 -3.7500 8 6 3.9840 -0.9622 -3.3419 9 7 5.0565 -1.2923 -3.1617 10 6 2.5430 0.3850 -4.7972 11 6 2.9309 -0.3943 -6.0274 12 1 3.1884 -1.4399 -5.9453 13 6 2.9559 0.2274 -7.2578 14 7 3.2939 -0.4527 -8.3314 15 14 2.5097 2.0358 -7.3998 16 1 3.7326 2.8619 -7.2347 17 1 1.9135 2.2953 -8.7348 18 1 1.5281 2.3879 -6.3425 19 6 2.0323 -0.7104 1.2305 20 6 2.0613 -2.0923 1.2674 21 6 2.5272 -2.7443 2.3936 22 6 2.9537 -2.0151 3.4879 23 6 2.9196 -0.6330 3.4535 24 35 3.5036 0.3651 4.9497 25 6 2.4585 0.0193 2.3239 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.4496 -1.4979 -1.4100 30 1 1.0872 0.6163 -2.5525 31 1 2.7590 1.0462 -2.1182 32 1 1.5316 0.7734 -4.9169 33 1 3.2366 1.2143 -4.6587 34 1 3.3119 -0.0151 -9.1970 35 1 1.7244 -2.6623 0.4142 36 1 2.5539 -3.8236 2.4204 37 1 3.3133 -2.5248 4.3695 38 1 2.4313 1.0986 2.2968 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028920333.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:23 Heat of formation + Delta-G solvation = 40.208057 kcal Electronic energy + Delta-G solvation = -19790.854112 eV Core-core repulsion = 16678.873652 eV Total energy + Delta-G solvation = -3111.980460 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 336.053 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.85732 -37.66396 -35.87893 -33.86487 -32.63809 -32.25554 -31.02201 -29.52989 -28.97101 -26.70872 -24.06871 -23.05914 -22.37949 -21.53873 -20.50393 -17.51108 -16.87481 -16.80185 -15.90955 -15.50544 -14.79159 -14.68627 -14.41997 -14.04395 -13.65365 -13.62220 -13.40791 -13.23044 -12.83904 -12.52857 -12.42367 -12.15034 -11.87411 -11.83855 -11.43714 -11.33713 -11.23256 -11.16256 -10.99833 -10.83181 -10.53600 -10.33606 -10.01227 -9.80562 -9.36051 -9.12205 -8.85586 -8.64399 -8.47045 -6.13058 -4.13936 0.91333 1.05985 1.38083 3.24837 3.31751 3.32956 3.38142 3.68062 3.76499 4.04910 4.35765 4.46267 4.59825 4.76596 4.82062 4.86495 4.99653 5.08237 5.18394 5.21806 5.33933 5.38891 5.45620 5.54871 5.64807 5.69921 5.80522 5.90343 5.97368 6.12171 6.15496 6.24235 6.30919 6.59125 6.90145 6.92839 7.07286 7.30495 7.60801 8.37917 8.53486 8.90528 9.46645 11.00023 Molecular weight = 336.05amu Principal moments of inertia in cm(-1) A = 0.023390 B = 0.002283 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.790982 B =12263.640854 C =12403.818666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.122 3.878 3 H 0.090 0.910 4 N -0.685 5.685 5 C 0.064 3.936 6 C 0.021 3.979 7 H 0.105 0.895 8 C 0.250 3.750 9 N -0.469 5.469 10 C -0.005 4.005 11 C -0.528 4.528 12 H 0.074 0.926 13 C 0.071 3.929 14 N -0.897 5.897 15 Si 0.878 3.122 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.263 1.263 19 C -0.056 4.056 20 C -0.081 4.081 21 C -0.114 4.114 22 C -0.098 4.098 23 C -0.089 4.089 24 Br -0.059 7.059 25 C -0.089 4.089 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.344 0.656 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.037 0.963 33 H 0.021 0.979 34 H 0.265 0.735 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.831 1.076 27.821 28.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.012 3.988 3 H 0.108 0.892 4 N -0.315 5.315 5 C -0.066 4.066 6 C -0.001 4.001 7 H 0.122 0.878 8 C -0.067 4.067 9 N -0.145 5.145 10 C -0.044 4.044 11 C -0.566 4.566 12 H 0.092 0.908 13 C -0.131 4.131 14 N -0.535 5.535 15 Si 0.705 3.295 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.188 1.188 19 C -0.058 4.058 20 C -0.100 4.100 21 C -0.133 4.133 22 C -0.118 4.118 23 C -0.169 4.169 24 Br 0.026 6.974 25 C -0.109 4.109 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.163 0.837 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.055 0.945 33 H 0.039 0.961 34 H 0.075 0.925 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.298 1.048 28.608 29.113 hybrid contribution -1.550 0.881 -0.922 2.007 sum -6.848 1.928 27.686 28.585 Atomic orbital electron populations 1.22495 0.95782 1.02697 1.02743 1.20438 0.92881 0.97548 0.87969 0.89215 1.60575 1.57415 1.09962 1.03596 1.22145 1.00427 0.95280 0.88733 1.18944 0.85013 1.00534 0.95656 0.87757 1.28720 0.94638 0.92459 0.90895 1.81032 1.12665 1.09831 1.11018 1.19636 0.98054 0.94872 0.91809 1.21023 1.47015 0.98499 0.90086 0.90775 1.24995 0.94404 0.97993 0.95733 1.69904 1.47873 1.36670 0.99011 0.86815 0.79274 0.85749 0.77670 1.20233 1.21273 1.18759 1.19813 0.97848 0.93816 0.94303 1.21104 0.97295 0.93996 0.97573 1.21175 0.98935 1.00196 0.93025 1.21068 0.99523 0.91853 0.99354 1.21690 1.06512 0.94597 0.94067 1.96705 1.88958 1.72751 1.38967 1.20937 0.98108 1.00156 0.91677 0.91906 0.91628 0.92026 0.83717 0.93007 0.90345 0.94525 0.96079 0.92542 0.85260 0.85204 0.85340 0.85230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.35 9.14 37.16 0.34 -1.01 16 2 C 0.12 1.13 2.79 -68.86 -0.19 0.94 16 3 H 0.09 0.84 7.66 -51.93 -0.40 0.44 16 4 N -0.68 -7.56 5.41 -107.95 -0.58 -8.14 16 5 C 0.06 0.80 4.85 -3.83 -0.02 0.78 16 6 C 0.02 0.34 2.35 -93.41 -0.22 0.12 16 7 H 0.10 1.62 8.14 -51.93 -0.42 1.19 16 8 C 0.25 5.05 13.67 -20.74 -0.28 4.76 16 9 N -0.47 -10.58 18.54 42.17 0.78 -9.80 16 10 C 0.00 -0.10 3.49 -27.88 -0.10 -0.20 16 11 C -0.53 -13.98 9.15 -34.44 -0.32 -14.30 16 12 H 0.07 2.16 7.84 -52.49 -0.41 1.75 16 13 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 14 N -0.90 -26.83 13.96 55.43 0.77 -26.06 16 15 Si 0.88 20.36 27.47 -169.99 -4.67 15.69 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 18 H -0.26 -5.59 6.54 56.52 0.37 -5.22 16 19 C -0.06 -0.56 4.95 -104.63 -0.52 -1.08 16 20 C -0.08 -0.78 9.32 -39.58 -0.37 -1.15 16 21 C -0.11 -1.03 10.05 -39.59 -0.40 -1.43 16 22 C -0.10 -0.91 9.79 -39.56 -0.39 -1.30 16 23 C -0.09 -0.90 6.22 -39.52 -0.25 -1.15 16 24 Br -0.06 -0.55 33.70 -68.01 -2.29 -2.84 16 25 C -0.09 -0.89 9.41 -39.56 -0.37 -1.26 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.49 7.45 -51.93 -0.39 0.11 16 28 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 29 H 0.34 3.32 7.82 -39.29 -0.31 3.01 16 30 H 0.05 0.56 7.44 -51.93 -0.39 0.17 16 31 H 0.08 1.02 8.05 -51.93 -0.42 0.60 16 32 H 0.04 0.71 7.20 -51.93 -0.37 0.34 16 33 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.13 1.11 7.26 -52.49 -0.38 0.73 16 36 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.13 1.15 8.04 -52.49 -0.42 0.73 16 LS Contribution 345.65 15.07 5.21 5.21 Total: -1.00 -31.46 345.65 -9.11 -40.57 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -5.16 Total: -0.25 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -3.17 Total: -14.38 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 0.97 Total: -44.00 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.67 Total: 15.69 kcal Atomic # 35 Polarization: -0.55 SS G_CDS: -2.29 Total: -2.84 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.46 -9.11 -40.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028920333.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.780 kcal (2) G-P(sol) polarization free energy of solvation -31.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds