Wall clock time and date at job start Tue Mar 31 2020 05:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.46810 * 2 1 4 4 N 1.46904 * 109.47399 * 119.99713 * 2 1 3 5 5 C 1.46894 * 111.00040 * 275.00615 * 4 2 1 6 6 C 1.53001 * 109.47021 * 179.97438 * 5 4 2 7 7 H 1.09000 * 109.47059 * 305.00057 * 6 5 4 8 8 C 1.47202 * 109.47132 * 65.00194 * 6 5 4 9 9 N 4.90941 * 135.91406 * 112.22585 * 2 1 3 10 10 C 1.53005 * 109.47361 * 184.99775 * 6 5 4 11 11 C 1.50693 * 109.47332 * 174.99851 * 10 6 5 12 12 H 1.08000 * 119.99831 * 0.02562 * 11 10 6 13 13 C 1.37877 * 120.00066 * 180.02562 * 11 10 6 14 14 N 1.31513 * 119.99888 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99851 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47487 * 59.99868 * 15 13 11 17 17 H 1.48503 * 109.46823 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.46987 * 299.99208 * 15 13 11 19 19 C 1.50702 * 109.47512 * 240.00410 * 2 1 3 20 20 C 1.38264 * 119.99053 * 280.01723 * 19 2 1 21 21 C 1.38218 * 120.02064 * 179.97438 * 20 19 2 22 22 C 1.38241 * 120.00795 * 359.97438 * 21 20 19 23 23 C 1.38307 * 119.99034 * 359.77076 * 22 21 20 24 24 Br 1.89098 * 120.01067 * 180.24672 * 23 22 21 25 25 C 1.38195 * 119.99764 * 99.99938 * 19 2 1 26 26 H 1.08993 * 109.47669 * 299.99558 * 1 2 3 27 27 H 1.09003 * 109.47355 * 60.00562 * 1 2 3 28 28 H 1.09007 * 109.46634 * 179.97438 * 1 2 3 29 29 H 1.00901 * 110.99787 * 151.04821 * 4 2 1 30 30 H 1.09007 * 109.47181 * 299.99651 * 5 4 2 31 31 H 1.09004 * 109.47357 * 59.99929 * 5 4 2 32 32 H 1.09004 * 109.46779 * 295.00594 * 10 6 5 33 33 H 1.09001 * 109.46686 * 54.99503 * 10 6 5 34 34 H 0.96997 * 119.99842 * 179.97438 * 14 13 11 35 35 H 1.07999 * 119.98996 * 0.02562 * 20 19 2 36 36 H 1.08000 * 119.99768 * 180.02562 * 21 20 19 37 37 H 1.07997 * 120.00465 * 180.02562 * 22 21 20 38 38 H 1.08002 * 120.00237 * 359.97099 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0824 0.2226 2.3469 6 6 2.5950 -0.5331 3.5745 7 1 1.9692 -1.4081 3.7500 8 6 3.9839 -0.9619 3.3421 9 7 5.0564 -1.2920 3.1619 10 6 2.5427 0.3851 4.7973 11 6 2.9305 -0.3941 6.0275 12 1 3.1889 -1.4395 5.9454 13 6 2.9554 0.2276 7.2579 14 7 2.6413 1.5008 7.3578 15 14 3.4369 -0.7381 8.7827 16 1 4.8152 -1.2661 8.6196 17 1 3.3859 0.1531 9.9695 18 1 2.4926 -1.8686 8.9712 19 6 2.0324 -0.7103 -1.2305 20 6 2.0664 -2.0921 -1.2654 21 6 2.5266 -2.7442 -2.3938 22 6 2.9526 -2.0150 -3.4883 23 6 2.9138 -0.6329 -3.4558 24 35 3.4898 0.3650 -4.9553 25 6 2.4587 0.0195 -2.3239 26 1 -0.3634 0.5137 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 2.9174 -1.1204 1.0287 30 1 2.7588 1.0463 2.1182 31 1 1.0869 0.6163 2.5525 32 1 3.2363 1.2145 4.6587 33 1 1.5313 0.7734 4.9169 34 1 2.6584 1.9381 8.2234 35 1 1.7325 -2.6621 -0.4110 36 1 2.5527 -3.8236 -2.4209 37 1 3.3118 -2.5246 -4.3702 38 1 2.4313 1.0988 -2.2968 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028920334.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:25 Heat of formation + Delta-G solvation = 35.551998 kcal Electronic energy + Delta-G solvation = -19753.249671 eV Core-core repulsion = 16641.067309 eV Total energy + Delta-G solvation = -3112.182362 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 336.053 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.90845 -37.58439 -35.81289 -33.89173 -32.66587 -32.27604 -30.81745 -29.49359 -28.98582 -26.39966 -24.03228 -22.91563 -22.37607 -21.84766 -20.28953 -17.34512 -16.76099 -16.51515 -15.99982 -15.73520 -14.92928 -14.71493 -14.25167 -14.15894 -13.67806 -13.47744 -13.23898 -13.01453 -12.77172 -12.42237 -12.21640 -12.05717 -11.87097 -11.72405 -11.42584 -11.23585 -11.09031 -11.04484 -10.90877 -10.74433 -10.59740 -10.51935 -10.28532 -9.58432 -9.28667 -9.15733 -8.91011 -8.48002 -8.44418 -6.11264 -4.14578 0.84913 0.98660 1.34075 3.30020 3.33474 3.34400 3.37899 3.53721 3.59048 4.09481 4.36662 4.40403 4.56974 4.76308 4.80909 5.03948 5.07852 5.13170 5.24154 5.26786 5.45375 5.51816 5.56105 5.67023 5.69978 5.84089 5.89965 6.05561 6.11668 6.17621 6.22816 6.36622 6.50969 6.54498 7.02653 7.33738 7.41064 7.50434 7.83469 8.20994 8.37248 8.89716 9.50971 10.99585 Molecular weight = 336.05amu Principal moments of inertia in cm(-1) A = 0.026180 B = 0.002165 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.279153 B =12932.551699 C =12982.965786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.122 3.878 3 H 0.056 0.944 4 N -0.685 5.685 5 C 0.066 3.934 6 C 0.008 3.992 7 H 0.111 0.889 8 C 0.240 3.760 9 N -0.475 5.475 10 C 0.033 3.967 11 C -0.527 4.527 12 H 0.056 0.944 13 C 0.063 3.937 14 N -0.892 5.892 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.275 1.275 19 C -0.081 4.081 20 C -0.084 4.084 21 C -0.115 4.115 22 C -0.095 4.095 23 C -0.091 4.091 24 Br -0.057 7.057 25 C -0.086 4.086 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.341 0.659 30 H 0.036 0.964 31 H 0.093 0.907 32 H 0.024 0.976 33 H 0.040 0.960 34 H 0.263 0.737 35 H 0.141 0.859 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.766 -2.941 -25.945 26.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.013 3.987 3 H 0.074 0.926 4 N -0.317 5.317 5 C -0.063 4.063 6 C -0.014 4.014 7 H 0.129 0.871 8 C -0.077 4.077 9 N -0.152 5.152 10 C -0.006 4.006 11 C -0.566 4.566 12 H 0.074 0.926 13 C -0.139 4.139 14 N -0.530 5.530 15 Si 0.719 3.281 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.200 1.200 19 C -0.082 4.082 20 C -0.102 4.102 21 C -0.134 4.134 22 C -0.115 4.115 23 C -0.170 4.170 24 Br 0.028 6.972 25 C -0.106 4.106 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.159 0.841 30 H 0.055 0.945 31 H 0.112 0.888 32 H 0.042 0.958 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.158 0.842 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.569 -3.152 -26.480 26.905 hybrid contribution 0.628 -0.008 1.126 1.289 sum -2.941 -3.159 -25.354 25.719 Atomic orbital electron populations 1.21786 0.93037 1.02799 1.01652 1.20465 0.96445 0.95389 0.86416 0.92648 1.60738 1.33530 1.33482 1.03935 1.22157 1.01887 0.93393 0.88901 1.19328 0.83655 1.01540 0.96924 0.87075 1.29352 0.95167 0.92003 0.91186 1.81065 1.12565 1.10618 1.10991 1.19156 0.98900 0.93733 0.88775 1.21100 1.46826 0.96652 0.91976 0.92558 1.24950 0.95003 0.94873 0.99114 1.69924 1.48190 1.09910 1.24997 0.86652 0.79255 0.79907 0.82258 1.20281 1.21183 1.19994 1.20039 0.98710 0.94117 0.95347 1.21308 0.96695 0.93976 0.98255 1.21226 0.98875 1.00315 0.92971 1.21119 0.99144 0.91848 0.99358 1.21719 1.06621 0.94646 0.94040 1.96715 1.89129 1.72720 1.38587 1.21009 0.97693 1.00280 0.91611 0.91634 0.92702 0.91693 0.84061 0.94536 0.88827 0.95775 0.94184 0.92719 0.84163 0.85019 0.85219 0.85096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.27 9.39 37.16 0.35 -0.92 16 2 C 0.12 1.28 2.82 -68.86 -0.19 1.08 16 3 H 0.06 0.58 7.66 -51.92 -0.40 0.19 16 4 N -0.68 -8.34 5.69 -107.95 -0.61 -8.96 16 5 C 0.07 0.93 4.92 -3.83 -0.02 0.91 16 6 C 0.01 0.13 2.42 -93.40 -0.23 -0.09 16 7 H 0.11 1.88 8.14 -51.93 -0.42 1.45 16 8 C 0.24 4.74 12.98 -20.74 -0.27 4.47 16 9 N -0.48 -10.24 18.54 42.17 0.78 -9.45 16 10 C 0.03 0.75 4.42 -27.88 -0.12 0.62 16 11 C -0.53 -13.86 8.60 -34.44 -0.30 -14.16 16 12 H 0.06 1.47 7.59 -52.49 -0.40 1.07 16 13 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 14 N -0.89 -25.32 13.29 55.43 0.74 -24.58 16 15 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 18 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 19 C -0.08 -0.83 4.71 -104.63 -0.49 -1.32 16 20 C -0.08 -0.82 9.01 -39.58 -0.36 -1.17 16 21 C -0.12 -1.01 10.05 -39.59 -0.40 -1.41 16 22 C -0.09 -0.86 9.79 -39.55 -0.39 -1.25 16 23 C -0.09 -0.90 6.22 -39.52 -0.25 -1.15 16 24 Br -0.06 -0.52 33.70 -68.01 -2.29 -2.82 16 25 C -0.09 -0.86 9.41 -39.56 -0.37 -1.24 16 26 H 0.06 0.62 7.45 -51.93 -0.39 0.24 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.34 4.47 7.07 -39.29 -0.28 4.20 16 30 H 0.04 0.52 8.05 -51.93 -0.42 0.10 16 31 H 0.09 1.21 7.44 -51.93 -0.39 0.82 16 32 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.14 1.33 7.72 -52.49 -0.41 0.92 16 36 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.13 1.20 8.04 -52.49 -0.42 0.78 16 LS Contribution 348.42 15.07 5.25 5.25 Total: -1.00 -29.03 348.42 -9.47 -38.50 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -5.19 Total: -0.08 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -3.13 Total: -14.00 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 0.90 Total: -43.00 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 35 Polarization: -0.52 SS G_CDS: -2.29 Total: -2.82 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.03 -9.47 -38.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028920334.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.050 kcal (2) G-P(sol) polarization free energy of solvation -29.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds