Wall clock time and date at job start Tue Mar 31 2020 05:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47303 * 2 1 4 4 N 1.46906 * 109.47125 * 240.00195 * 2 1 3 5 5 C 1.46902 * 110.99573 * 84.99799 * 4 2 1 6 6 C 1.53008 * 109.46622 * 179.97438 * 5 4 2 7 7 H 1.09003 * 109.47223 * 304.99930 * 6 5 4 8 8 C 1.47198 * 109.46966 * 65.00286 * 6 5 4 9 9 N 4.90944 * 82.27775 * 240.86650 * 2 1 3 10 10 C 1.53008 * 109.46744 * 185.00131 * 6 5 4 11 11 C 1.50694 * 109.46650 * 175.00063 * 10 6 5 12 12 H 1.08003 * 120.00498 * 359.97438 * 11 10 6 13 13 C 1.37876 * 119.99879 * 179.97438 * 11 10 6 14 14 N 1.31519 * 119.99776 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00416 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47086 * 89.99690 * 15 13 11 17 17 H 1.48495 * 109.47382 * 210.00139 * 15 13 11 18 18 H 1.48503 * 109.47045 * 330.00007 * 15 13 11 19 19 C 1.50703 * 109.47440 * 120.00206 * 2 1 3 20 20 C 1.38256 * 119.99391 * 79.72812 * 19 2 1 21 21 C 1.38220 * 120.02141 * 179.72537 * 20 19 2 22 22 C 1.38239 * 120.00670 * 0.55190 * 21 20 19 23 23 C 1.38305 * 119.98878 * 359.71918 * 22 21 20 24 24 Br 1.89100 * 120.00793 * 180.02562 * 23 22 21 25 25 C 1.38197 * 119.99455 * 260.00271 * 19 2 1 26 26 H 1.09005 * 109.46664 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46897 * 299.99209 * 1 2 3 28 28 H 1.08994 * 109.47330 * 60.00158 * 1 2 3 29 29 H 1.00896 * 111.00309 * 321.04211 * 4 2 1 30 30 H 1.08990 * 109.47358 * 299.99539 * 5 4 2 31 31 H 1.09004 * 109.47457 * 60.00221 * 5 4 2 32 32 H 1.09005 * 109.46614 * 294.99810 * 10 6 5 33 33 H 1.08993 * 109.46898 * 55.00161 * 10 6 5 34 34 H 0.97000 * 119.99810 * 180.02562 * 14 13 11 35 35 H 1.08000 * 119.99293 * 0.02562 * 20 19 2 36 36 H 1.08002 * 119.99892 * 180.26888 * 21 20 19 37 37 H 1.08005 * 120.00452 * 179.70265 * 22 21 20 38 38 H 1.08002 * 120.00084 * 0.02562 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5962 -0.5327 -3.5742 7 1 3.5520 -1.0009 -3.3389 8 6 1.6228 -1.5691 -3.9555 9 7 0.8703 -2.3685 -4.2494 10 6 2.7800 0.4463 -4.7356 11 6 3.4010 -0.2729 -5.9053 12 1 3.6409 -1.3231 -5.8279 13 6 3.6628 0.4098 -7.0742 14 7 3.3710 1.6887 -7.1682 15 14 4.4332 -0.4814 -8.5239 16 1 3.3621 -1.0447 -9.3846 17 1 5.2520 0.4731 -9.3134 18 1 5.2978 -1.5814 -8.0260 19 6 2.0324 -0.7105 1.2304 20 6 2.0615 -2.0922 1.2672 21 6 2.5275 -2.7444 2.3933 22 6 2.9540 -2.0153 3.4876 23 6 2.9198 -0.6331 3.4533 24 35 3.5038 0.3648 4.9497 25 6 2.4586 0.0193 2.3239 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.4496 -1.4979 -1.4101 30 1 1.0870 0.6163 -2.5525 31 1 2.7588 1.0464 -2.1182 32 1 1.8101 0.8478 -5.0293 33 1 3.4316 1.2622 -4.4232 34 1 3.5549 2.1689 -7.9907 35 1 1.7246 -2.6622 0.4140 36 1 2.5542 -3.8237 2.4200 37 1 3.3137 -2.5249 4.3693 38 1 2.4312 1.0986 2.2968 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028920335.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:27 Heat of formation + Delta-G solvation = 35.530386 kcal Electronic energy + Delta-G solvation = -19728.280618 eV Core-core repulsion = 16616.097319 eV Total energy + Delta-G solvation = -3112.183299 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 336.053 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.83300 -37.65980 -35.86836 -33.90680 -32.64832 -32.23401 -30.86133 -29.42103 -28.87157 -26.32025 -24.02584 -23.04745 -22.39187 -21.86946 -20.42889 -17.32316 -16.70432 -16.56165 -15.83003 -15.59623 -15.00544 -14.71815 -14.27834 -13.94961 -13.73175 -13.62139 -13.25182 -12.91064 -12.88751 -12.66241 -12.24131 -12.12276 -11.83727 -11.73488 -11.38375 -11.21451 -11.11098 -11.04953 -10.97445 -10.77793 -10.57011 -10.49183 -10.29984 -9.59219 -9.27064 -9.09884 -8.83750 -8.48049 -8.42008 -6.11838 -4.15050 0.93032 1.07900 1.39813 3.28412 3.35117 3.38201 3.40321 3.51382 3.57023 4.10420 4.39545 4.51421 4.62129 4.74976 4.84853 4.90805 5.05667 5.11163 5.21266 5.26334 5.37860 5.46910 5.52216 5.61052 5.68278 5.74901 5.92165 5.99647 6.10368 6.16305 6.22496 6.38576 6.50668 6.61003 7.00660 7.31372 7.40783 7.49610 7.83100 8.20439 8.34913 8.89459 9.50618 10.99030 Molecular weight = 336.05amu Principal moments of inertia in cm(-1) A = 0.021590 B = 0.002202 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.591623 B =12713.110805 C =13139.056403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.120 3.880 3 H 0.093 0.907 4 N -0.684 5.684 5 C 0.067 3.933 6 C 0.007 3.993 7 H 0.111 0.889 8 C 0.241 3.759 9 N -0.476 5.476 10 C 0.033 3.967 11 C -0.527 4.527 12 H 0.057 0.943 13 C 0.062 3.938 14 N -0.892 5.892 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.285 1.285 18 H -0.272 1.272 19 C -0.055 4.055 20 C -0.082 4.082 21 C -0.114 4.114 22 C -0.098 4.098 23 C -0.089 4.089 24 Br -0.059 7.059 25 C -0.087 4.087 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.339 0.661 30 H 0.038 0.962 31 H 0.093 0.907 32 H 0.024 0.976 33 H 0.040 0.960 34 H 0.263 0.737 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.670 -1.872 26.680 26.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.010 3.990 3 H 0.111 0.889 4 N -0.314 5.314 5 C -0.062 4.062 6 C -0.015 4.015 7 H 0.129 0.871 8 C -0.076 4.076 9 N -0.153 5.153 10 C -0.006 4.006 11 C -0.565 4.565 12 H 0.075 0.925 13 C -0.140 4.140 14 N -0.530 5.530 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.211 1.211 18 H -0.197 1.197 19 C -0.056 4.056 20 C -0.101 4.101 21 C -0.133 4.133 22 C -0.118 4.118 23 C -0.169 4.169 24 Br 0.026 6.974 25 C -0.108 4.108 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.158 0.842 30 H 0.056 0.944 31 H 0.111 0.889 32 H 0.042 0.958 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.907 -2.464 26.831 27.011 hybrid contribution -0.309 -0.275 -1.404 1.464 sum -2.216 -2.739 25.426 25.669 Atomic orbital electron populations 1.22500 0.96005 1.02589 1.02748 1.20459 0.92806 0.97702 0.88003 0.88884 1.60676 1.57055 1.09959 1.03745 1.22136 1.00508 0.95238 0.88362 1.19340 0.93939 0.91959 0.96302 0.87078 1.29354 0.93315 0.93282 0.91632 1.81064 1.11920 1.12071 1.10295 1.19161 0.98270 0.93172 0.89981 1.21138 1.41336 0.96194 0.97824 0.92508 1.24953 0.95516 0.94824 0.98678 1.69937 1.47693 1.08074 1.27310 0.86592 0.79372 0.79582 0.82539 1.20692 1.21067 1.19701 1.19816 0.97712 0.93770 0.94341 1.21107 0.97298 0.94060 0.97609 1.21165 0.98994 1.00159 0.93010 1.21065 0.99602 0.91860 0.99299 1.21690 1.06540 0.94574 0.94051 1.96706 1.88927 1.72766 1.38973 1.20943 0.98011 1.00215 0.91591 0.92266 0.91789 0.91721 0.84200 0.94416 0.88873 0.95756 0.94173 0.92778 0.85426 0.85249 0.85353 0.85108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.68 9.14 37.16 0.34 -1.34 16 2 C 0.12 1.22 2.79 -68.86 -0.19 1.03 16 3 H 0.09 0.90 7.66 -51.93 -0.40 0.50 16 4 N -0.68 -8.22 5.71 -107.94 -0.62 -8.83 16 5 C 0.07 0.92 4.92 -3.82 -0.02 0.90 16 6 C 0.01 0.12 2.42 -93.40 -0.23 -0.11 16 7 H 0.11 1.90 8.14 -51.93 -0.42 1.48 16 8 C 0.24 4.67 12.98 -20.74 -0.27 4.40 16 9 N -0.48 -10.00 18.54 42.18 0.78 -9.22 16 10 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 11 C -0.53 -13.83 8.60 -34.44 -0.30 -14.13 16 12 H 0.06 1.49 7.59 -52.48 -0.40 1.09 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -25.29 13.29 55.43 0.74 -24.55 16 15 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 19 C -0.05 -0.56 4.95 -104.63 -0.52 -1.07 16 20 C -0.08 -0.81 9.32 -39.58 -0.37 -1.18 16 21 C -0.11 -1.02 10.05 -39.59 -0.40 -1.42 16 22 C -0.10 -0.89 9.79 -39.56 -0.39 -1.28 16 23 C -0.09 -0.87 6.22 -39.52 -0.25 -1.12 16 24 Br -0.06 -0.53 33.70 -68.01 -2.29 -2.83 16 25 C -0.09 -0.86 9.41 -39.56 -0.37 -1.23 16 26 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.64 7.45 -51.93 -0.39 0.25 16 29 H 0.34 4.19 6.90 -39.29 -0.27 3.92 16 30 H 0.04 0.52 7.43 -51.93 -0.39 0.13 16 31 H 0.09 1.20 8.06 -51.93 -0.42 0.78 16 32 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.13 1.22 7.26 -52.49 -0.38 0.83 16 36 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 38 H 0.13 1.14 8.04 -52.49 -0.42 0.71 16 LS Contribution 348.07 15.07 5.25 5.25 Total: -1.00 -29.06 348.07 -9.49 -38.55 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -5.15 Total: -0.18 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -3.17 Total: -14.33 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: 0.90 Total: -42.61 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 35 Polarization: -0.53 SS G_CDS: -2.29 Total: -2.83 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.06 -9.49 -38.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028920335.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.080 kcal (2) G-P(sol) polarization free energy of solvation -29.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds