Wall clock time and date at job start Tue Mar 31 2020 05:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33399 * 125.20073 * 2 1 4 4 C 1.38422 * 114.91755 * 180.26129 * 3 2 1 5 5 S 1.76202 * 122.53583 * 180.02562 * 4 3 2 6 6 O 1.42102 * 106.40420 * 229.13964 * 5 4 3 7 7 O 1.42097 * 106.40267 * 2.06392 * 5 4 3 8 8 N 1.65604 * 107.21618 * 115.60230 * 5 4 3 9 9 C 1.38860 * 119.99919 * 298.71243 * 8 5 4 10 10 C 1.39564 * 119.83905 * 313.42670 * 9 8 5 11 11 C 1.36340 * 120.15641 * 179.71930 * 10 9 8 12 12 C 1.40885 * 119.83848 * 0.54707 * 11 10 9 13 13 C 1.41134 * 120.15521 * 179.70015 * 12 11 10 14 14 H 1.08007 * 119.99712 * 207.23321 * 13 12 11 15 15 C 1.39859 * 120.00555 * 27.23270 * 13 12 11 16 16 N 1.30911 * 119.99578 * 12.72141 * 15 13 12 17 17 Si 1.86799 * 120.00487 * 192.72405 * 15 13 12 18 18 H 1.48498 * 109.47188 * 89.99739 * 17 15 13 19 19 H 1.48498 * 109.47167 * 210.00056 * 17 15 13 20 20 H 1.48504 * 109.46992 * 329.99481 * 17 15 13 21 21 C 1.40888 * 119.68576 * 359.72541 * 12 11 10 22 22 C 1.36339 * 119.83791 * 359.97438 * 21 12 11 23 23 C 1.33387 * 114.92434 * 0.02562 * 4 3 2 24 24 C 1.50703 * 125.20365 * 180.02562 * 23 4 3 25 25 S 1.75876 * 125.20576 * 180.30630 * 2 1 3 26 26 H 1.09001 * 109.47247 * 179.71413 * 1 2 3 27 27 H 1.08998 * 109.47658 * 299.72098 * 1 2 3 28 28 H 1.09011 * 109.47043 * 59.71965 * 1 2 3 29 29 H 1.07993 * 122.53998 * 0.24597 * 3 2 1 30 30 H 0.96997 * 119.99960 * 118.71266 * 8 5 4 31 31 H 1.07997 * 119.92400 * 359.97161 * 10 9 8 32 32 H 1.08009 * 120.08113 * 180.27117 * 11 10 9 33 33 H 0.97004 * 119.99841 * 180.02562 * 16 15 13 34 34 H 1.07998 * 120.08040 * 179.97438 * 21 12 11 35 35 H 1.07995 * 119.91864 * 179.97438 * 22 21 12 36 36 H 1.08998 * 109.46829 * 175.05583 * 24 23 4 37 37 H 1.09007 * 109.46947 * 295.05600 * 24 23 4 38 38 H 1.08994 * 109.47018 * 55.05641 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0901 0.0000 4 6 3.6379 0.8430 -0.0057 5 16 4.8355 2.1354 -0.0061 6 8 5.7587 1.8268 -1.0414 7 8 4.1092 3.3555 0.0494 8 7 5.6752 2.0260 1.4170 9 6 5.0110 2.1697 2.6279 10 6 4.1105 3.2210 2.8055 11 6 3.4504 3.3649 3.9898 12 6 3.6879 2.4559 5.0396 13 6 3.0131 2.6023 6.2704 14 1 3.4649 2.2367 7.1808 15 6 1.7593 3.2207 6.3115 16 7 1.1005 3.4387 5.2015 17 14 1.0250 3.7357 7.9500 18 1 1.4444 5.1248 8.2657 19 1 -0.4565 3.6720 7.8704 20 1 1.5031 2.8197 9.0166 21 6 4.6026 1.4003 4.8550 22 6 5.2509 1.2651 3.6632 23 6 3.9750 -0.4476 -0.0109 24 6 5.3861 -0.9769 -0.0171 25 16 2.5209 -1.4370 -0.0077 26 1 -0.3634 -1.0276 -0.0051 27 1 -0.3634 0.5095 0.8924 28 1 -0.3634 0.5182 -0.8875 29 1 1.8668 2.0895 0.0039 30 1 6.6311 1.8615 1.4047 31 1 3.9330 3.9200 2.0015 32 1 2.7505 4.1765 4.1243 33 1 0.2310 3.8680 5.2298 34 1 4.7898 0.7001 5.6556 35 1 5.9526 0.4567 3.5205 36 1 5.3669 -2.0634 0.0680 37 1 5.8761 -0.6940 -0.9488 38 1 5.9356 -0.5561 0.8248 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000029972293.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:42 Heat of formation + Delta-G solvation = -29.600358 kcal Electronic energy + Delta-G solvation = -24743.779927 eV Core-core repulsion = 21190.277949 eV Total energy + Delta-G solvation = -3553.501979 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 337.059 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.13923 -37.95635 -36.81673 -35.47961 -34.84190 -33.12642 -32.78729 -29.60713 -29.48321 -28.74057 -24.94033 -24.76856 -23.24324 -21.27342 -20.94776 -19.65383 -18.44126 -17.41481 -17.22699 -17.12542 -16.72627 -15.96521 -15.24909 -14.75362 -14.30467 -14.08717 -13.94378 -13.52401 -13.31666 -13.25209 -12.98467 -12.83672 -12.44536 -12.29094 -12.22996 -11.86437 -11.77040 -11.72919 -11.65928 -11.64297 -11.39448 -11.17116 -11.04069 -10.78813 -10.54950 -10.48432 -10.16827 -9.79922 -9.34558 -8.96258 -8.72073 -8.35375 -7.65230 -7.19503 -6.82157 -4.41843 0.66229 0.89097 1.63365 1.93917 2.43108 2.64932 3.00347 3.03303 3.05998 3.11621 3.51156 3.86744 4.06723 4.52942 4.64218 4.79874 5.09378 5.13308 5.33591 5.43640 5.56212 5.59792 5.64930 5.86360 5.96219 6.03047 6.10848 6.17933 6.27718 6.35912 6.50198 6.90689 6.96451 7.10619 7.12860 7.40589 7.53826 7.82083 7.96246 8.06279 8.17894 8.54523 8.78729 8.87195 10.10891 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.012919 B = 0.004414 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.892888 B = 6341.498834 C = 7218.099501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.188 4.188 3 C -0.065 4.065 4 C -0.670 4.670 5 S 2.694 3.306 6 O -0.977 6.977 7 O -0.952 6.952 8 N -1.031 6.031 9 C -0.010 4.010 10 C -0.116 4.116 11 C -0.147 4.147 12 C 0.110 3.890 13 C -0.453 4.453 14 H 0.079 0.921 15 C 0.072 3.928 16 N -0.790 5.790 17 Si 0.912 3.088 18 H -0.267 1.267 19 H -0.277 1.277 20 H -0.262 1.262 21 C -0.216 4.216 22 C -0.087 4.087 23 C -0.056 4.056 24 C -0.118 4.118 25 S 0.120 5.880 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.154 0.846 30 H 0.410 0.590 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.282 0.718 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.618 -7.432 -8.183 11.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.306 4.306 3 C -0.093 4.093 4 C -0.769 4.769 5 S 2.785 3.215 6 O -0.967 6.967 7 O -0.942 6.942 8 N -0.783 5.783 9 C -0.105 4.105 10 C -0.137 4.137 11 C -0.167 4.167 12 C 0.106 3.894 13 C -0.482 4.482 14 H 0.097 0.903 15 C -0.146 4.146 16 N -0.415 5.415 17 Si 0.736 3.264 18 H -0.192 1.192 19 H -0.203 1.203 20 H -0.186 1.186 21 C -0.236 4.236 22 C -0.109 4.109 23 C -0.177 4.177 24 C -0.177 4.177 25 S 0.384 5.616 26 H 0.083 0.917 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.172 0.828 30 H 0.245 0.755 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.120 0.880 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.010 -8.279 -9.036 12.297 hybrid contribution -0.209 0.896 1.121 1.450 sum 0.801 -7.383 -7.915 10.853 Atomic orbital electron populations 1.20321 0.87473 1.02599 1.03442 1.24424 0.99965 0.94883 1.11280 1.19543 0.89973 1.00346 0.99417 1.29769 1.12927 1.13340 1.20850 1.02319 0.72913 0.74084 0.72208 1.93521 1.62444 1.85680 1.55071 1.93530 1.73464 1.41295 1.85933 1.52347 1.17972 1.87921 1.20079 1.16762 1.05934 1.01430 0.86400 1.21153 0.97601 0.96055 0.98925 1.21050 1.01869 1.00784 0.93035 1.17745 0.89517 0.89001 0.93092 1.19603 1.01295 1.32637 0.94699 0.90291 1.25949 0.97039 0.93378 0.98218 1.69836 1.12286 1.30887 1.28471 0.86247 0.78172 0.79983 0.81959 1.19199 1.20252 1.18632 1.20638 1.05248 1.00806 0.96945 1.20258 0.99846 0.96674 0.94157 1.24289 0.99740 0.95064 0.98557 1.20878 0.89408 1.02336 1.05050 1.83941 0.96328 1.10136 1.71206 0.91693 0.89932 0.90581 0.82829 0.75453 0.85919 0.85715 0.90687 0.88635 0.89090 0.90101 0.87969 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 10.38 36.00 0.37 -0.58 16 2 C -0.19 -2.86 6.51 -36.00 -0.23 -3.09 16 3 C -0.06 -1.12 9.57 -41.21 -0.39 -1.51 16 4 C -0.67 -11.52 5.68 -41.21 -0.23 -11.76 16 5 S 2.69 47.94 5.21 -107.50 -0.56 47.38 16 6 O -0.98 -17.58 16.82 -57.17 -0.96 -18.54 16 7 O -0.95 -19.59 14.46 -57.17 -0.83 -20.41 16 8 N -1.03 -17.61 5.35 32.51 0.17 -17.43 16 9 C -0.01 -0.20 6.13 -83.69 -0.51 -0.71 16 10 C -0.12 -2.71 9.15 -39.77 -0.36 -3.07 16 11 C -0.15 -3.72 8.61 -39.26 -0.34 -4.06 16 12 C 0.11 2.78 5.56 -106.79 -0.59 2.19 16 13 C -0.45 -11.43 9.04 -37.88 -0.34 -11.77 16 14 H 0.08 1.91 7.88 -52.48 -0.41 1.49 16 15 C 0.07 1.74 5.22 -17.34 -0.09 1.65 16 16 N -0.79 -19.67 10.83 55.54 0.60 -19.07 16 17 Si 0.91 17.99 29.58 -169.99 -5.03 12.97 16 18 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 19 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 20 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 21 C -0.22 -4.95 9.74 -39.26 -0.38 -5.33 16 22 C -0.09 -1.80 9.90 -39.77 -0.39 -2.19 16 23 C -0.06 -0.85 6.50 -36.00 -0.23 -1.08 16 24 C -0.12 -1.42 9.29 36.01 0.33 -1.09 16 25 S 0.12 1.65 23.31 -107.50 -2.51 -0.86 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.08 0.79 8.14 -51.92 -0.42 0.36 16 29 H 0.15 2.64 7.74 -52.49 -0.41 2.24 16 30 H 0.41 5.68 8.95 -34.47 -0.31 5.37 16 31 H 0.12 2.84 5.69 -52.49 -0.30 2.54 16 32 H 0.13 3.28 6.16 -52.48 -0.32 2.95 16 33 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 34 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 35 H 0.09 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.10 1.18 7.53 -51.92 -0.39 0.79 16 38 H 0.09 1.04 7.77 -51.93 -0.40 0.64 16 LS Contribution 346.86 15.07 5.23 5.23 Total: -1.00 -29.72 346.86 -11.50 -41.22 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -4.22 Total: 11.94 kcal Atomic # 6 Polarization: -39.00 SS G_CDS: -3.41 Total: -42.41 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 0.78 Total: -36.50 kcal Atomic # 8 Polarization: -37.17 SS G_CDS: -1.79 Total: -38.96 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.97 kcal Atomic # 16 Polarization: 49.58 SS G_CDS: -3.07 Total: 46.52 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.72 -11.50 -41.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029972293.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.620 kcal (2) G-P(sol) polarization free energy of solvation -29.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds