Wall clock time and date at job start Tue Mar 31 2020 04:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46896 * 109.47458 * 2 1 4 4 C 1.46900 * 110.99910 * 297.01987 * 3 2 1 5 5 C 1.50698 * 109.47060 * 288.11925 * 4 3 2 6 6 O 1.21285 * 119.99834 * 354.17604 * 5 4 3 7 7 N 1.34776 * 120.00339 * 174.17429 * 5 4 3 8 8 C 1.46503 * 119.99806 * 0.02562 * 7 5 4 9 9 C 1.46502 * 120.00333 * 180.02562 * 7 5 4 10 10 C 1.50695 * 109.47136 * 89.99663 * 9 7 5 11 11 H 1.08004 * 120.00504 * 0.02562 * 10 9 7 12 12 C 1.37882 * 119.99882 * 180.02562 * 10 9 7 13 13 N 1.31510 * 119.99883 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99684 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.46972 * 90.00480 * 14 12 10 16 16 H 1.48501 * 109.47130 * 209.99871 * 14 12 10 17 17 H 1.48493 * 109.47432 * 330.00250 * 14 12 10 18 18 C 1.46897 * 110.99884 * 60.96818 * 3 2 1 19 19 C 1.50706 * 109.47254 * 66.04631 * 18 3 2 20 20 C 1.38254 * 120.00068 * 270.02739 * 19 18 3 21 21 C 1.38212 * 119.99769 * 179.97438 * 20 19 18 22 22 C 1.38261 * 120.00146 * 359.76600 * 21 20 19 23 23 C 1.38212 * 119.99597 * 0.46231 * 22 21 20 24 24 N 1.48021 * 119.99810 * 179.79000 * 23 22 21 25 25 O 1.21795 * 120.00490 * 179.72221 * 24 23 22 26 26 O 1.21807 * 119.99998 * 359.45380 * 24 23 22 27 27 C 1.38216 * 119.99824 * 89.99723 * 19 18 3 28 28 H 1.09000 * 109.46999 * 62.00261 * 1 2 3 29 29 H 1.09002 * 109.47284 * 182.00331 * 1 2 3 30 30 H 1.08998 * 109.47026 * 302.00641 * 1 2 3 31 31 H 1.08999 * 109.47002 * 239.99647 * 2 1 3 32 32 H 1.09001 * 109.47230 * 120.00336 * 2 1 3 33 33 H 1.09000 * 109.47407 * 48.11681 * 4 3 2 34 34 H 1.09002 * 109.47119 * 168.12020 * 4 3 2 35 35 H 1.08991 * 109.47217 * 90.00274 * 8 7 5 36 36 H 1.09002 * 109.46770 * 210.00412 * 8 7 5 37 37 H 1.08999 * 109.47045 * 329.99899 * 8 7 5 38 38 H 1.08996 * 109.47136 * 209.99858 * 9 7 5 39 39 H 1.09003 * 109.46708 * 330.00005 * 9 7 5 40 40 H 0.97001 * 119.99464 * 179.97438 * 13 12 10 41 41 H 1.09001 * 109.47716 * 306.05184 * 18 3 2 42 42 H 1.08996 * 109.47390 * 186.04757 * 18 3 2 43 43 H 1.08000 * 119.99931 * 359.96698 * 20 19 18 44 44 H 1.08003 * 120.00239 * 179.97438 * 21 20 19 45 45 H 1.07998 * 120.00295 * 180.24983 * 22 21 20 46 46 H 1.08003 * 119.99638 * 0.02562 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.6079 2.0889 -1.2217 5 6 2.3958 1.5637 -2.3940 6 8 3.2918 0.7662 -2.2141 7 7 2.1050 1.9800 -3.6424 8 6 1.0232 2.9437 -3.8598 9 6 2.8706 1.4690 -4.7821 10 6 2.2088 0.2241 -5.3142 11 1 1.3077 -0.1490 -4.8502 12 6 2.7536 -0.4388 -6.3935 13 7 3.8512 0.0152 -6.9583 14 14 1.9328 -1.9815 -7.0535 15 1 0.9448 -1.6085 -8.0976 16 1 2.9614 -2.8762 -7.6425 17 1 1.2397 -2.6862 -5.9453 18 6 1.5678 2.1031 1.1991 19 6 2.2095 1.4959 2.4201 20 6 1.5835 0.4591 3.0867 21 6 2.1722 -0.0981 4.2062 22 6 3.3896 0.3782 4.6565 23 6 4.0132 1.4178 3.9927 24 7 5.3142 1.9309 4.4775 25 8 5.8662 2.8437 3.8897 26 8 5.8306 1.4434 5.4672 27 6 3.4242 1.9752 2.8730 28 1 -0.3633 0.4824 -0.9074 29 1 -0.3634 -1.0270 0.0359 30 1 -0.3633 0.5447 0.8714 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 0.5446 1.9237 -1.3954 34 1 1.7957 3.1565 -1.1068 35 1 1.4234 3.9563 -3.8115 36 1 0.5782 2.7753 -4.8404 37 1 0.2629 2.8164 -3.0891 38 1 2.9045 2.2258 -5.5658 39 1 3.8852 1.2323 -4.4614 40 1 4.2346 -0.4514 -7.7173 41 1 0.4837 2.0257 1.2821 42 1 1.8524 3.1525 1.1230 43 1 0.6343 0.0846 2.7328 44 1 1.6830 -0.9078 4.7273 45 1 3.8517 -0.0599 5.5288 46 1 3.9133 2.7851 2.3521 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000030967601.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:17 Heat of formation + Delta-G solvation = 6.013315 kcal Electronic energy + Delta-G solvation = -28895.415121 eV Core-core repulsion = 24789.222144 eV Total energy + Delta-G solvation = -4106.192977 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.32610 -40.29306 -39.18428 -37.29542 -36.69641 -34.74971 -32.78694 -32.57095 -32.21150 -30.55881 -28.59735 -27.22671 -26.76421 -25.86057 -25.24581 -23.28193 -22.79491 -22.21213 -20.68543 -19.00733 -18.72711 -18.31980 -17.66468 -16.98957 -16.67146 -16.50775 -16.35286 -15.92777 -15.56349 -14.95623 -14.73076 -14.49540 -14.29965 -13.87508 -13.68825 -13.27625 -13.01460 -12.71020 -12.63117 -12.41239 -12.21942 -12.12794 -11.96964 -11.86541 -11.73701 -11.63719 -11.44015 -11.30035 -11.27284 -11.21221 -10.94332 -10.76190 -10.59197 -10.17939 -9.90176 -9.65164 -9.58660 -8.99126 -8.46262 -8.25383 -7.64943 -6.06683 -4.11710 -0.37770 0.58289 1.12865 1.22558 2.87988 3.26651 3.33445 3.35987 3.43642 3.62239 3.98520 4.10259 4.19705 4.36038 4.41958 4.50558 4.56447 4.69556 4.92700 4.95814 5.04062 5.12857 5.20044 5.23013 5.27269 5.28989 5.32584 5.41797 5.44521 5.57366 5.62215 5.74056 5.78632 5.88287 5.94848 5.97317 6.14657 6.21865 6.25623 6.76890 6.93451 7.08376 7.43662 7.48221 7.52584 7.89727 8.20988 8.40975 8.88277 9.11464 9.53463 11.01370 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015469 B = 0.002529 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.647026 B =11068.948168 C =11372.385025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.043 3.957 3 N -0.511 5.511 4 C 0.032 3.968 5 C 0.505 3.495 6 O -0.521 6.521 7 N -0.606 5.606 8 C 0.083 3.917 9 C 0.247 3.753 10 C -0.526 4.526 11 H 0.055 0.945 12 C 0.061 3.939 13 N -0.894 5.894 14 Si 0.897 3.103 15 H -0.280 1.280 16 H -0.285 1.285 17 H -0.275 1.275 18 C 0.086 3.914 19 C -0.068 4.068 20 C -0.062 4.062 21 C -0.118 4.118 22 C -0.058 4.058 23 C -0.045 4.045 24 N 0.029 4.971 25 O -0.156 6.156 26 O -0.166 6.166 27 C -0.032 4.032 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.053 0.947 38 H 0.031 0.969 39 H 0.044 0.956 40 H 0.263 0.737 41 H 0.057 0.943 42 H 0.090 0.910 43 H 0.141 0.859 44 H 0.147 0.853 45 H 0.151 0.849 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.410 4.736 21.599 24.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.085 4.085 3 N -0.234 5.234 4 C -0.098 4.098 5 C 0.290 3.710 6 O -0.397 6.397 7 N -0.339 5.339 8 C -0.061 4.061 9 C 0.127 3.873 10 C -0.565 4.565 11 H 0.074 0.926 12 C -0.141 4.141 13 N -0.533 5.533 14 Si 0.725 3.275 15 H -0.207 1.207 16 H -0.211 1.211 17 H -0.200 1.200 18 C -0.042 4.042 19 C -0.069 4.069 20 C -0.081 4.081 21 C -0.137 4.137 22 C -0.078 4.078 23 C -0.127 4.127 24 N 0.548 4.452 25 O -0.373 6.373 26 O -0.381 6.381 27 C -0.051 4.051 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.114 0.886 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.115 0.885 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.049 0.951 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.109 0.891 43 H 0.159 0.841 44 H 0.164 0.836 45 H 0.169 0.831 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -9.882 4.010 21.284 23.807 hybrid contribution -1.025 -0.695 -0.446 1.317 sum -10.907 3.316 20.838 23.753 Atomic orbital electron populations 1.22496 0.98565 1.02712 1.01709 1.22315 0.92162 0.89594 1.04387 1.61839 1.59538 1.02277 0.99738 1.22145 0.98469 0.99251 0.89980 1.20072 0.84876 0.82550 0.83522 1.90678 1.31188 1.33320 1.84471 1.48169 1.34724 1.43457 1.07582 1.21632 0.90061 0.91956 1.02448 1.19269 0.92346 0.93956 0.81690 1.21404 1.10808 1.10210 1.14040 0.92630 1.24940 0.94935 0.97649 0.96600 1.69930 1.19991 1.40253 1.23088 0.86512 0.79057 0.82980 0.78937 1.20665 1.21053 1.19975 1.21151 0.97542 0.98226 0.87242 1.19748 0.93973 0.96493 0.96677 1.21625 0.99846 0.93264 0.93347 1.21172 0.94542 1.00869 0.97125 1.21059 0.94674 0.92772 0.99251 1.21119 0.87356 1.02911 1.01356 1.43636 1.02242 0.99561 0.99721 1.94566 1.64159 1.20787 1.57804 1.94524 1.66917 1.60919 1.15719 1.20963 0.93713 0.98710 0.91738 0.92073 0.91662 0.92767 0.88579 0.90852 0.91701 0.88525 0.93726 0.90773 0.92801 0.95073 0.93808 0.92681 0.92470 0.89142 0.84148 0.83569 0.83104 0.82729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.89 9.08 37.16 0.34 -1.55 16 2 C 0.04 0.55 5.37 -3.82 -0.02 0.53 16 3 N -0.51 -6.50 4.30 -237.52 -1.02 -7.52 16 4 C 0.03 0.43 4.05 -4.98 -0.02 0.41 16 5 C 0.50 9.97 7.27 -10.99 -0.08 9.89 16 6 O -0.52 -12.78 14.70 5.55 0.08 -12.70 16 7 N -0.61 -12.35 2.86 -182.96 -0.52 -12.87 16 8 C 0.08 1.23 10.27 59.85 0.61 1.84 16 9 C 0.25 6.37 5.16 -5.19 -0.03 6.34 16 10 C -0.53 -14.67 9.39 -34.44 -0.32 -14.99 16 11 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 14 Si 0.90 21.61 29.54 -169.99 -5.02 16.58 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 18 C 0.09 0.75 4.89 -4.97 -0.02 0.72 16 19 C -0.07 -0.59 4.88 -104.62 -0.51 -1.10 16 20 C -0.06 -0.43 7.95 -39.58 -0.31 -0.75 16 21 C -0.12 -0.75 10.05 -39.58 -0.40 -1.15 16 22 C -0.06 -0.48 9.56 -39.58 -0.38 -0.86 16 23 C -0.04 -0.48 6.85 -79.95 -0.55 -1.03 16 24 N 0.03 0.39 4.45 33.96 0.15 0.54 16 25 O -0.16 -2.26 18.45 -29.46 -0.54 -2.80 16 26 O -0.17 -2.25 18.45 -29.46 -0.54 -2.80 16 27 C -0.03 -0.32 9.21 -39.59 -0.36 -0.69 16 28 H 0.06 0.65 6.33 -51.93 -0.33 0.32 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.39 5.36 -51.93 -0.28 0.11 16 31 H 0.10 1.64 6.57 -51.93 -0.34 1.30 16 32 H 0.07 0.85 6.10 -51.93 -0.32 0.53 16 33 H 0.07 0.75 4.86 -51.93 -0.25 0.50 16 34 H 0.10 1.07 7.81 -51.93 -0.41 0.66 16 35 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 1.14 8.07 -51.93 -0.42 0.73 16 37 H 0.05 0.62 6.28 -51.93 -0.33 0.29 16 38 H 0.03 0.81 8.07 -51.93 -0.42 0.40 16 39 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.06 0.39 5.93 -51.93 -0.31 0.09 16 42 H 0.09 0.69 7.81 -51.93 -0.41 0.29 16 43 H 0.14 0.71 6.97 -52.49 -0.37 0.34 16 44 H 0.15 0.51 8.06 -52.48 -0.42 0.08 16 45 H 0.15 1.04 7.61 -52.49 -0.40 0.64 16 46 H 0.16 1.59 7.61 -52.48 -0.40 1.19 16 LS Contribution 380.05 15.07 5.73 5.73 Total: -1.00 -34.98 380.05 -9.27 -44.25 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -6.16 Total: -1.90 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -2.15 Total: -0.77 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: -0.66 Total: -45.60 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -1.01 Total: -18.30 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.98 -9.27 -44.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000030967601.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.263 kcal (2) G-P(sol) polarization free energy of solvation -34.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds