Wall clock time and date at job start Tue Mar 31 2020 05:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.52998 * 109.46688 * 259.18232 * 3 2 1 5 5 N 1.46906 * 109.46756 * 179.38467 * 4 3 2 6 6 C 1.46895 * 110.99642 * 287.95525 * 5 4 3 7 7 C 1.50699 * 109.47188 * 160.36137 * 6 5 4 8 8 H 1.08003 * 119.99986 * 4.67356 * 7 6 5 9 9 C 1.37878 * 120.00080 * 184.67751 * 7 6 5 10 10 N 1.31516 * 120.00031 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00028 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46914 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.46864 * 119.99727 * 11 9 7 14 14 H 1.48493 * 109.47222 * 240.00029 * 11 9 7 15 15 C 1.46897 * 111.00144 * 164.00486 * 5 4 3 16 16 C 1.50706 * 109.46936 * 293.95151 * 15 5 4 17 17 C 1.37928 * 119.96654 * 104.72160 * 16 15 5 18 18 C 1.39360 * 119.93359 * 179.78857 * 17 16 15 19 19 C 1.48357 * 120.06666 * 180.22863 * 18 17 16 20 20 C 1.39350 * 120.12302 * 0.02562 * 19 18 17 21 21 C 1.38018 * 119.87630 * 179.71812 * 20 19 18 22 22 C 1.38327 * 120.12070 * 0.57668 * 21 20 19 23 23 C 1.38327 * 120.24851 * 359.67446 * 22 21 20 24 24 C 1.38016 * 120.11987 * 0.04498 * 23 22 21 25 25 C 1.39400 * 119.86880 * 0.50970 * 18 17 16 26 26 C 1.37894 * 119.93285 * 359.72559 * 25 18 17 27 27 C 1.38802 * 119.96616 * 284.99926 * 16 15 5 28 28 O 1.35875 * 119.93848 * 359.97438 * 27 16 15 29 29 H 1.08993 * 109.46989 * 139.18382 * 3 2 1 30 30 H 1.09001 * 109.47111 * 19.18157 * 3 2 1 31 31 H 1.08997 * 109.47350 * 59.38023 * 4 3 2 32 32 H 1.09006 * 109.47194 * 299.37403 * 4 3 2 33 33 H 1.09001 * 109.47701 * 280.35940 * 6 5 4 34 34 H 1.08998 * 109.47269 * 40.35834 * 6 5 4 35 35 H 0.97002 * 119.99579 * 180.02562 * 10 9 7 36 36 H 1.09001 * 109.47153 * 53.94905 * 15 5 4 37 37 H 1.08997 * 109.47516 * 173.95161 * 15 5 4 38 38 H 1.07997 * 120.03588 * 0.02562 * 17 16 15 39 39 H 1.08003 * 120.06169 * 359.97119 * 20 19 18 40 40 H 1.08001 * 119.93966 * 180.29582 * 21 20 19 41 41 H 1.07999 * 119.87498 * 179.69943 * 22 21 20 42 42 H 1.07990 * 119.93769 * 180.02562 * 23 22 21 43 43 H 1.07997 * 120.06182 * 179.97438 * 24 23 22 44 44 H 1.08000 * 120.03620 * 179.70240 * 25 18 17 45 45 H 1.07997 * 119.96447 * 180.02562 * 26 25 18 46 46 H 0.96695 * 114.00341 * 89.99846 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.2716 1.4169 5 7 4.5868 0.2577 1.4197 6 6 5.1005 -1.1086 1.2552 7 6 6.5313 -1.0542 0.7852 8 1 7.0349 -0.1028 0.6971 9 6 7.1974 -2.2188 0.4675 10 7 6.5843 -3.3773 0.5752 11 14 8.9707 -2.1513 -0.1157 12 1 9.4272 -0.7385 -0.1496 13 1 9.8284 -2.9257 0.8169 14 1 9.0666 -2.7357 -1.4775 15 6 5.1168 0.8756 2.6425 16 6 4.7722 2.3427 2.6538 17 6 3.7661 2.8078 3.4747 18 6 3.4509 4.1652 3.4880 19 6 2.3727 4.6693 4.3735 20 6 1.6726 3.7876 5.1946 21 6 0.6744 4.2630 6.0208 22 6 0.3604 5.6102 6.0259 23 6 1.0486 6.4892 5.2090 24 6 2.0525 6.0256 4.3832 25 6 4.1469 5.0475 2.6631 26 6 5.1485 4.5760 1.8410 27 6 5.4638 3.2237 1.8340 28 8 6.4510 2.7620 1.0225 29 1 2.9710 0.7785 -0.6717 30 1 2.9718 -0.9698 -0.3377 31 1 2.7458 -0.5001 2.0907 32 1 2.7632 1.2470 1.7503 33 1 5.0514 -1.6328 2.2097 34 1 4.4960 -1.6379 0.5186 35 1 7.0531 -4.1967 0.3520 36 1 4.6761 0.3922 3.5143 37 1 6.1999 0.7566 2.6697 38 1 3.2256 2.1212 4.1094 39 1 1.9134 2.7348 5.1876 40 1 0.1344 3.5813 6.6611 41 1 -0.4247 5.9771 6.6703 42 1 0.7996 7.5399 5.2173 43 1 2.5889 6.7126 3.7455 44 1 3.9017 6.0993 2.6677 45 1 5.6883 5.2592 1.2020 46 1 6.1458 2.4941 0.1450 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031601657.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:58 Heat of formation + Delta-G solvation = 35.061804 kcal Electronic energy + Delta-G solvation = -27935.808886 eV Core-core repulsion = 24176.298898 eV Total energy + Delta-G solvation = -3759.509988 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 336.158 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.18941 -38.95069 -37.34347 -36.30497 -36.05646 -32.80627 -32.36019 -31.89474 -31.14294 -30.34184 -28.27680 -27.03345 -25.31259 -23.49699 -23.21529 -22.90231 -21.38476 -20.84041 -19.84614 -18.03794 -17.37066 -17.22051 -16.54733 -15.85531 -15.83086 -15.33724 -15.04647 -14.66876 -14.50554 -14.36098 -14.08969 -13.97590 -13.81112 -13.66819 -13.28310 -13.25702 -12.81490 -12.67750 -12.26445 -12.13766 -12.12101 -12.02257 -11.80724 -11.45255 -11.41693 -11.10920 -11.06390 -10.91129 -10.85627 -10.64835 -10.39423 -10.10833 -9.76652 -9.50656 -9.31481 -9.12446 -8.73441 -8.47050 -7.84151 -7.49667 -6.07357 -4.08229 0.62037 1.23372 1.43057 1.83638 2.94822 3.00653 3.29617 3.38448 3.43352 3.48999 3.96175 4.18249 4.42299 4.48720 4.57577 4.59946 4.78898 4.88904 4.96752 5.01635 5.11823 5.24056 5.25741 5.29414 5.31407 5.35068 5.46935 5.65566 5.69002 5.80116 5.81743 5.90033 5.97768 6.07847 6.15662 6.19209 6.20509 6.25137 6.33471 6.41494 6.47857 6.68577 6.71408 6.81157 6.91850 7.08548 7.20525 7.74004 7.76683 7.93688 8.05333 8.09058 8.41221 9.01249 9.56930 11.03170 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.012240 B = 0.003142 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.025637 B = 8909.882951 C =10090.469925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.219 3.781 3 C -0.026 4.026 4 C 0.056 3.944 5 N -0.526 5.526 6 C 0.188 3.812 7 C -0.503 4.503 8 H 0.070 0.930 9 C 0.056 3.944 10 N -0.900 5.900 11 Si 0.894 3.106 12 H -0.270 1.270 13 H -0.287 1.287 14 H -0.286 1.286 15 C 0.105 3.895 16 C -0.093 4.093 17 C -0.091 4.091 18 C -0.069 4.069 19 C -0.032 4.032 20 C -0.114 4.114 21 C -0.117 4.117 22 C -0.127 4.127 23 C -0.118 4.118 24 C -0.116 4.116 25 C -0.099 4.099 26 C -0.152 4.152 27 C 0.144 3.856 28 O -0.488 6.488 29 H 0.113 0.887 30 H 0.117 0.883 31 H 0.033 0.967 32 H 0.069 0.931 33 H -0.008 1.008 34 H 0.038 0.962 35 H 0.260 0.740 36 H 0.031 0.969 37 H 0.101 0.899 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.127 0.873 46 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.672 17.279 6.531 20.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.099 4.099 3 C -0.066 4.066 4 C -0.074 4.074 5 N -0.251 5.251 6 C 0.064 3.936 7 C -0.542 4.542 8 H 0.088 0.912 9 C -0.146 4.146 10 N -0.539 5.539 11 Si 0.723 3.277 12 H -0.194 1.194 13 H -0.213 1.213 14 H -0.212 1.212 15 C -0.023 4.023 16 C -0.094 4.094 17 C -0.110 4.110 18 C -0.069 4.069 19 C -0.032 4.032 20 C -0.132 4.132 21 C -0.135 4.135 22 C -0.145 4.145 23 C -0.136 4.136 24 C -0.134 4.134 25 C -0.117 4.117 26 C -0.170 4.170 27 C 0.098 3.902 28 O -0.299 6.299 29 H 0.131 0.869 30 H 0.135 0.865 31 H 0.052 0.948 32 H 0.088 0.912 33 H 0.010 0.990 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.049 0.951 37 H 0.120 0.880 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.142 0.858 44 H 0.141 0.859 45 H 0.145 0.855 46 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -8.805 17.448 6.566 20.618 hybrid contribution 0.810 -0.752 -0.036 1.106 sum -7.996 16.696 6.530 19.629 Atomic orbital electron populations 1.81156 1.13255 1.10021 1.09186 1.29467 0.95504 0.92295 0.92605 1.19368 0.80074 1.06622 1.00578 1.21941 0.91087 1.00714 0.93678 1.62093 1.03572 1.24337 1.35058 1.19874 0.96177 0.81545 0.96024 1.21208 0.96265 0.93151 1.43566 0.91168 1.24971 0.98275 0.95429 0.95879 1.69956 1.37014 0.97647 1.49314 0.86490 0.84809 0.78250 0.78188 1.19444 1.21321 1.21199 1.20881 1.02407 0.87723 0.91270 1.20358 0.95035 0.96903 0.97139 1.21055 0.96819 0.94368 0.98753 1.18649 0.96832 0.93400 0.98023 1.18823 0.95141 0.93298 0.95947 1.21296 0.96025 0.99760 0.96114 1.21104 0.97632 0.95724 0.98996 1.21183 1.00076 0.93658 0.99588 1.21070 0.96307 0.99648 0.96623 1.21236 0.97955 0.94812 0.99401 1.20965 0.95712 0.99113 0.95883 1.21355 0.98662 0.95531 1.01496 1.18366 0.88332 0.90417 0.93069 1.84713 1.31735 1.84690 1.28786 0.86933 0.86483 0.94842 0.91242 0.99035 0.94377 0.93001 0.95110 0.88036 0.85879 0.85677 0.85982 0.86243 0.86072 0.85773 0.85922 0.85514 0.74248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.73 18.54 42.15 0.78 -6.95 16 2 C 0.22 3.20 15.43 -20.76 -0.32 2.88 16 3 C -0.03 -0.35 5.78 -29.52 -0.17 -0.52 16 4 C 0.06 0.82 4.78 -3.82 -0.02 0.80 16 5 N -0.53 -9.06 4.37 -237.52 -1.04 -10.10 16 6 C 0.19 4.16 4.59 -4.98 -0.02 4.14 16 7 C -0.50 -12.47 8.61 -34.44 -0.30 -12.77 16 8 H 0.07 1.73 7.66 -52.48 -0.40 1.33 16 9 C 0.06 1.46 5.46 -17.82 -0.10 1.36 16 10 N -0.90 -24.92 13.29 55.43 0.74 -24.18 16 11 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 15 C 0.10 1.75 4.52 -4.97 -0.02 1.72 16 16 C -0.09 -1.35 4.50 -104.52 -0.47 -1.82 16 17 C -0.09 -1.19 8.02 -39.28 -0.31 -1.51 16 18 C -0.07 -0.85 5.88 -104.88 -0.62 -1.46 16 19 C -0.03 -0.37 5.88 -104.90 -0.62 -0.98 16 20 C -0.11 -1.24 9.43 -39.25 -0.37 -1.61 16 21 C -0.12 -1.12 10.03 -39.63 -0.40 -1.52 16 22 C -0.13 -1.13 10.04 -39.52 -0.40 -1.53 16 23 C -0.12 -1.06 10.03 -39.63 -0.40 -1.46 16 24 C -0.12 -1.16 9.43 -39.25 -0.37 -1.53 16 25 C -0.10 -1.12 9.42 -39.27 -0.37 -1.49 16 26 C -0.15 -1.84 9.97 -39.48 -0.39 -2.24 16 27 C 0.14 2.03 6.68 -39.14 -0.26 1.77 16 28 O -0.49 -7.32 12.82 -19.35 -0.25 -7.57 16 29 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.12 1.66 6.52 -51.93 -0.34 1.33 16 31 H 0.03 0.51 8.05 -51.93 -0.42 0.10 16 32 H 0.07 0.96 6.11 -51.93 -0.32 0.64 16 33 H -0.01 -0.20 8.00 -51.93 -0.42 -0.62 16 34 H 0.04 0.88 6.24 -51.93 -0.32 0.56 16 35 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 36 H 0.03 0.50 7.93 -51.93 -0.41 0.09 16 37 H 0.10 1.95 7.18 -51.93 -0.37 1.58 16 38 H 0.12 1.48 6.14 -52.49 -0.32 1.15 16 39 H 0.13 1.26 6.20 -52.48 -0.33 0.94 16 40 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 42 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.12 1.02 6.20 -52.49 -0.33 0.70 16 44 H 0.12 1.10 6.20 -52.49 -0.33 0.78 16 45 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 46 H 0.40 5.00 9.06 45.56 0.41 5.42 16 LS Contribution 388.53 15.07 5.86 5.86 Total: -1.00 -29.73 388.53 -9.99 -39.72 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -5.13 Total: 5.55 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -5.92 Total: -17.76 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: 0.48 Total: -41.23 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -0.25 Total: -7.57 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.73 -9.99 -39.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031601657.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.785 kcal (2) G-P(sol) polarization free energy of solvation -29.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds