Wall clock time and date at job start Tue Mar 31 2020 05:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.07903 * 2 1 4 4 C 1.53494 * 110.10186 * 238.43828 * 2 1 3 5 5 C 1.50944 * 105.34339 * 240.74087 * 4 2 1 6 6 O 1.21293 * 125.91231 * 180.02562 * 5 4 2 7 7 C 1.46826 * 108.17034 * 0.02562 * 5 4 2 8 8 C 1.39642 * 110.69890 * 0.02562 * 7 5 4 9 9 C 1.38079 * 119.94667 * 180.02562 * 8 7 5 10 10 Cl 1.73602 * 119.76839 * 180.29826 * 9 8 7 11 11 C 1.38625 * 120.46484 * 0.02621 * 9 8 7 12 12 C 1.38032 * 120.29481 * 359.97438 * 11 9 8 13 13 C 1.38514 * 120.11974 * 359.97438 * 12 11 9 14 14 O 1.35620 * 120.04259 * 180.02562 * 13 12 11 15 15 C 1.42898 * 117.00410 * 0.02562 * 14 13 12 16 16 C 1.50695 * 109.47386 * 180.02562 * 15 14 13 17 17 O 1.21278 * 120.00146 * 359.97438 * 16 15 14 18 18 N 1.34783 * 119.99755 * 179.97438 * 16 15 14 19 19 C 1.46505 * 119.99486 * 179.97438 * 18 16 15 20 20 C 1.50707 * 109.46465 * 179.97438 * 19 18 16 21 21 H 1.07994 * 120.00145 * 0.02562 * 20 19 18 22 22 C 1.37878 * 119.99433 * 179.97438 * 20 19 18 23 23 N 1.31516 * 120.00289 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99615 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46756 * 90.00636 * 24 22 20 26 26 H 1.48502 * 109.47020 * 210.00128 * 24 22 20 27 27 H 1.48496 * 109.47421 * 330.00563 * 24 22 20 28 28 H 1.09001 * 109.46738 * 180.10437 * 1 2 3 29 29 H 1.08995 * 109.47261 * 300.10141 * 1 2 3 30 30 H 1.09001 * 109.46822 * 60.10960 * 1 2 3 31 31 H 1.08993 * 110.27012 * 121.77639 * 4 2 1 32 32 H 1.08997 * 110.34425 * 359.75011 * 4 2 1 33 33 H 1.07998 * 119.84793 * 179.97438 * 11 9 8 34 34 H 1.08005 * 119.94231 * 180.02562 * 12 11 9 35 35 H 1.09004 * 109.46705 * 299.99537 * 15 14 13 36 36 H 1.08998 * 109.47436 * 59.98979 * 15 14 13 37 37 H 0.96996 * 119.99988 * 359.97438 * 18 16 15 38 38 H 1.08995 * 109.47401 * 300.00007 * 19 18 16 39 39 H 1.08998 * 109.47186 * 60.00452 * 19 18 16 40 40 H 0.97003 * 119.99932 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9042 1.0237 0.0000 4 6 2.0576 -0.7545 -1.2282 5 6 2.8629 -1.9049 -0.6747 6 8 3.4492 -2.7421 -1.3278 7 6 2.8138 -1.8349 0.7910 8 6 2.0489 -0.7434 1.2077 9 6 1.8765 -0.4967 2.5553 10 17 0.9183 0.8570 3.0681 11 6 2.4587 -1.3257 3.5016 12 6 3.2177 -2.4086 3.1060 13 6 3.4016 -2.6736 1.7590 14 8 4.1472 -3.7384 1.3721 15 6 4.7130 -4.5448 2.4073 16 6 5.5024 -5.6712 1.7918 17 8 5.5732 -5.7738 0.5854 18 7 6.1299 -6.5648 2.5821 19 6 6.8968 -7.6602 1.9836 20 6 7.4946 -8.5098 3.0755 21 1 7.3203 -8.2591 4.1114 22 6 8.2632 -9.6077 2.7518 23 7 8.4751 -9.9133 1.4903 24 14 9.0037 -10.6612 4.1051 25 1 8.0532 -11.7437 4.4656 26 1 10.2763 -11.2588 3.6270 27 1 9.2701 -9.8187 5.2986 28 1 -0.3633 -1.0277 0.0019 29 1 -0.3633 0.5154 0.8890 30 1 -0.3633 0.5121 -0.8910 31 1 2.6930 -0.1026 -1.8276 32 1 1.2281 -1.1284 -1.8284 33 1 2.3178 -1.1232 4.5530 34 1 3.6684 -3.0510 3.8482 35 1 5.3725 -3.9341 3.0240 36 1 3.9147 -4.9553 3.0254 37 1 6.0736 -6.4826 3.5469 38 1 6.2374 -8.2712 1.3673 39 1 7.6950 -7.2496 1.3653 40 1 9.0162 -10.6856 1.2626 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031857027.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:39 Heat of formation + Delta-G solvation = -96.028070 kcal Electronic energy + Delta-G solvation = -25641.465552 eV Core-core repulsion = 21640.286474 eV Total energy + Delta-G solvation = -4001.179078 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.091 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.29275 -39.63340 -38.47227 -37.94120 -36.67698 -35.59890 -34.26769 -32.43489 -31.29440 -29.93401 -29.28447 -28.28719 -26.63684 -24.57538 -23.18188 -22.56434 -21.18261 -20.40781 -19.84880 -17.97561 -17.55475 -16.78121 -16.63312 -16.46676 -15.86691 -15.70506 -15.40439 -15.12551 -14.67369 -14.37119 -14.28808 -14.16219 -13.87785 -13.62976 -13.29547 -13.04115 -12.86802 -12.70223 -12.26824 -12.16511 -11.99339 -11.92880 -11.80346 -11.56682 -11.46576 -11.08623 -11.02415 -10.93656 -10.83199 -10.36114 -9.76129 -9.45716 -9.39932 -9.18525 -8.79763 -8.48874 -8.00200 -6.20613 -4.28512 0.26171 0.77983 1.76976 2.14746 2.63458 3.14027 3.21584 3.22780 3.27789 3.30048 3.56823 3.93851 4.08765 4.24087 4.32379 4.38781 4.55839 4.59862 4.66260 4.87374 4.96411 5.03200 5.04161 5.15601 5.19770 5.26790 5.29121 5.38182 5.44363 5.49729 5.59236 5.72540 5.77830 5.81655 6.03756 6.96213 7.23098 7.30684 7.45158 7.45322 7.58976 7.90761 8.47662 8.70020 8.95279 9.37863 10.89477 Molecular weight = 337.09amu Principal moments of inertia in cm(-1) A = 0.022533 B = 0.002198 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.347600 B =12735.918669 C =13872.241697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.051 4.051 3 H 0.103 0.897 4 C -0.167 4.167 5 C 0.404 3.596 6 O -0.415 6.415 7 C -0.213 4.213 8 C 0.003 3.997 9 C -0.080 4.080 10 Cl -0.068 7.068 11 C -0.029 4.029 12 C -0.220 4.220 13 C 0.209 3.791 14 O -0.263 6.263 15 C 0.032 3.968 16 C 0.498 3.502 17 O -0.523 6.523 18 N -0.707 5.707 19 C 0.251 3.749 20 C -0.546 4.546 21 H 0.064 0.936 22 C 0.064 3.936 23 N -0.884 5.884 24 Si 0.905 3.095 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.273 1.273 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.392 0.608 38 H 0.029 0.971 39 H 0.030 0.970 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.378 24.134 4.266 30.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.069 4.069 3 H 0.121 0.879 4 C -0.205 4.205 5 C 0.279 3.721 6 O -0.287 6.287 7 C -0.215 4.215 8 C 0.002 3.998 9 C -0.107 4.107 10 Cl -0.039 7.039 11 C -0.048 4.048 12 C -0.239 4.239 13 C 0.159 3.841 14 O -0.172 6.172 15 C -0.047 4.047 16 C 0.280 3.720 17 O -0.399 6.399 18 N -0.358 5.358 19 C 0.131 3.869 20 C -0.584 4.584 21 H 0.082 0.918 22 C -0.140 4.140 23 N -0.521 5.521 24 Si 0.732 3.268 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.197 1.197 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.162 0.838 34 H 0.166 0.834 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.224 0.776 38 H 0.047 0.953 39 H 0.048 0.952 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.919 23.475 2.724 29.064 hybrid contribution 0.366 -0.477 1.730 1.832 sum -16.553 22.997 4.454 28.683 Atomic orbital electron populations 1.21901 0.92511 1.02922 1.03126 1.20421 0.97262 0.99516 0.89698 0.87941 1.22436 1.01816 0.97610 0.98602 1.22091 0.78296 0.84552 0.87209 1.90693 1.35581 1.35827 1.66569 1.20347 1.06290 0.98656 0.96204 1.20150 0.93189 0.93666 0.92807 1.20108 1.03699 0.94809 0.92042 1.98355 1.70538 1.44125 1.90871 1.20960 0.92635 0.91613 0.99577 1.21208 1.06293 1.01905 0.94452 1.19320 0.87361 0.85574 0.91812 1.86321 1.61071 1.35763 1.34041 1.22844 0.98464 0.93120 0.90251 1.19781 0.81123 0.83125 0.87941 1.90767 1.61147 1.73997 1.14024 1.46346 1.51173 1.28815 1.09453 1.19180 0.90566 0.82763 0.94391 1.21187 1.32982 1.11567 0.92647 0.91802 1.24963 0.95930 0.97279 0.95854 1.69977 1.38226 1.27330 1.16532 0.86390 0.78642 0.80300 0.81418 1.20425 1.20959 1.19743 0.92019 0.91300 0.91375 0.87171 0.87039 0.83776 0.83391 0.88873 0.88868 0.77581 0.95255 0.95249 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 8.90 37.16 0.33 -0.52 16 2 C -0.05 -0.36 3.28 -91.37 -0.30 -0.66 16 3 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.17 -1.34 6.51 -27.51 -0.18 -1.52 16 5 C 0.40 5.39 7.71 -30.72 -0.24 5.15 16 6 O -0.41 -7.59 17.74 5.55 0.10 -7.50 16 7 C -0.21 -2.66 6.10 -104.88 -0.64 -3.30 16 8 C 0.00 0.03 5.44 -104.01 -0.57 -0.54 16 9 C -0.08 -0.69 6.31 -39.50 -0.25 -0.94 16 10 Cl -0.07 -0.50 26.97 -51.86 -1.40 -1.90 16 11 C -0.03 -0.23 9.81 -39.51 -0.39 -0.62 16 12 C -0.22 -2.08 9.01 -39.56 -0.36 -2.43 16 13 C 0.21 2.73 6.75 -38.46 -0.26 2.47 16 14 O -0.26 -4.36 9.35 -39.47 -0.37 -4.73 16 15 C 0.03 0.44 5.22 36.00 0.19 0.63 16 16 C 0.50 10.02 7.91 -10.99 -0.09 9.94 16 17 O -0.52 -13.45 16.50 -14.35 -0.24 -13.68 16 18 N -0.71 -14.39 5.55 -61.47 -0.34 -14.73 16 19 C 0.25 6.59 5.43 -5.19 -0.03 6.56 16 20 C -0.55 -14.52 9.28 -34.44 -0.32 -14.84 16 21 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 22 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 23 N -0.88 -25.93 13.29 55.43 0.74 -25.19 16 24 Si 0.91 20.57 29.54 -169.99 -5.02 15.55 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.40 6.40 -51.93 -0.33 0.07 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.11 0.74 7.69 -51.93 -0.40 0.34 16 33 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 34 H 0.15 1.05 6.28 -52.48 -0.33 0.72 16 35 H 0.09 0.99 7.65 -51.93 -0.40 0.59 16 36 H 0.09 0.98 7.65 -51.93 -0.40 0.59 16 37 H 0.39 6.45 8.32 -40.82 -0.34 6.11 16 38 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 360.16 15.07 5.43 5.43 Total: -1.00 -36.14 360.16 -8.98 -45.12 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -4.69 Total: 0.60 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -3.19 Total: 1.04 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.40 Total: -39.92 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -0.51 Total: -25.91 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.40 Total: -1.90 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.14 -8.98 -45.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031857027.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.907 kcal (2) G-P(sol) polarization free energy of solvation -36.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds