Wall clock time and date at job start Tue Mar 31 2020 05:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 110.07816 * 2 1 4 4 C 1.53493 * 110.15153 * 121.58958 * 2 1 3 5 5 C 1.50943 * 105.34498 * 119.22746 * 4 2 1 6 6 O 1.21294 * 125.91834 * 180.02562 * 5 4 2 7 7 C 1.46828 * 108.16950 * 359.73649 * 5 4 2 8 8 C 1.39649 * 110.69504 * 0.45852 * 7 5 4 9 9 C 1.38076 * 119.94782 * 179.78744 * 8 7 5 10 10 Cl 1.73603 * 119.76685 * 179.71663 * 9 8 7 11 11 C 1.38618 * 120.46886 * 359.70000 * 9 8 7 12 12 C 1.38043 * 120.29044 * 359.97438 * 11 9 8 13 13 C 1.38513 * 120.12215 * 0.02571 * 12 11 9 14 14 O 1.35614 * 120.04490 * 179.97438 * 13 12 11 15 15 C 1.42898 * 117.00000 * 359.97438 * 14 13 12 16 16 C 1.50700 * 109.46929 * 180.02562 * 15 14 13 17 17 O 1.21278 * 120.00429 * 359.97438 * 16 15 14 18 18 N 1.34778 * 119.99743 * 179.97438 * 16 15 14 19 19 C 1.46507 * 120.00131 * 179.97438 * 18 16 15 20 20 C 1.50697 * 109.47006 * 180.02562 * 19 18 16 21 21 H 1.07991 * 120.00449 * 359.72165 * 20 19 18 22 22 C 1.37885 * 119.99686 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99913 * 359.72095 * 22 20 19 24 24 Si 1.86798 * 119.99766 * 179.72528 * 22 20 19 25 25 H 1.48490 * 109.47339 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47239 * 120.00108 * 24 22 20 27 27 H 1.48504 * 109.46636 * 239.99667 * 24 22 20 28 28 H 1.09001 * 109.46872 * 181.56426 * 1 2 3 29 29 H 1.08998 * 109.47139 * 301.55620 * 1 2 3 30 30 H 1.09003 * 109.47514 * 61.55974 * 1 2 3 31 31 H 1.08997 * 110.27146 * 238.19042 * 4 2 1 32 32 H 1.08994 * 110.27358 * 0.16381 * 4 2 1 33 33 H 1.07996 * 119.86073 * 180.02562 * 11 9 8 34 34 H 1.08001 * 119.93863 * 180.02562 * 12 11 9 35 35 H 1.08993 * 109.47042 * 60.00205 * 15 14 13 36 36 H 1.09001 * 109.46988 * 299.99951 * 15 14 13 37 37 H 0.97004 * 120.00319 * 359.97438 * 18 16 15 38 38 H 1.08998 * 109.47049 * 59.99555 * 19 18 16 39 39 H 1.09001 * 109.46896 * 299.99826 * 19 18 16 40 40 H 0.97000 * 119.99651 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9042 1.0238 0.0000 4 6 2.0587 -0.7548 1.2274 5 6 2.8636 -1.9051 0.6729 6 8 3.4498 -2.7430 1.3251 7 6 2.8082 -1.8380 -0.7928 8 6 2.0489 -0.7421 -1.2084 9 6 1.8753 -0.4949 -2.5557 10 17 0.9243 0.8645 -3.0670 11 6 2.4552 -1.3243 -3.5029 12 6 3.2142 -2.4077 -3.1085 13 6 3.4003 -2.6727 -1.7617 14 8 4.1458 -3.7378 -1.3760 15 6 4.7093 -4.5447 -2.4121 16 6 5.4980 -5.6724 -1.7978 17 8 5.5709 -5.7747 -0.5915 18 7 6.1224 -6.5671 -2.5889 19 6 6.8897 -7.6631 -1.9918 20 6 7.4838 -8.5140 -3.0845 21 1 7.3038 -8.2662 -4.1201 22 6 8.2528 -9.6121 -2.7620 23 7 8.4725 -9.9136 -1.5008 24 14 8.9829 -10.6713 -4.1164 25 1 8.5900 -10.1233 -5.4394 26 1 10.4633 -10.6724 -4.0004 27 1 8.4751 -12.0607 -3.9860 28 1 -0.3633 -1.0273 0.0281 29 1 -0.3633 0.5378 0.8757 30 1 -0.3634 0.4894 -0.9036 31 1 2.6948 -0.1031 1.8264 32 1 1.2290 -1.1275 1.8280 33 1 2.3134 -1.1215 -4.5541 34 1 3.6638 -3.0500 -3.8513 35 1 5.3680 -3.9346 -3.0300 36 1 3.9095 -4.9549 -3.0286 37 1 6.0639 -6.4855 -3.5538 38 1 6.2311 -8.2729 -1.3733 39 1 7.6898 -7.2529 -1.3757 40 1 9.0138 -10.6858 -1.2740 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031857029.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:42 Heat of formation + Delta-G solvation = -96.050184 kcal Electronic energy + Delta-G solvation = -25641.657317 eV Core-core repulsion = 21640.477281 eV Total energy + Delta-G solvation = -4001.180037 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.091 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.29300 -39.63394 -38.47232 -37.94214 -36.67746 -35.59870 -34.26819 -32.43582 -31.29422 -29.93312 -29.28529 -28.28783 -26.63846 -24.57690 -23.18190 -22.56547 -21.18302 -20.40814 -19.84861 -17.97596 -17.55540 -16.78212 -16.63226 -16.46841 -15.86547 -15.70850 -15.40590 -15.12600 -14.67327 -14.37197 -14.28825 -14.16029 -13.87687 -13.63532 -13.29359 -13.03710 -12.86760 -12.70089 -12.26949 -12.16746 -11.99948 -11.92774 -11.80534 -11.56832 -11.46898 -11.08420 -11.00117 -10.95576 -10.83352 -10.36419 -9.76236 -9.44051 -9.39848 -9.18571 -8.80328 -8.48911 -8.00275 -6.20919 -4.28650 0.26139 0.77986 1.76907 2.14706 2.63473 3.14025 3.20838 3.22738 3.27898 3.30702 3.56806 3.93864 4.08770 4.24030 4.32260 4.38800 4.55796 4.59938 4.66260 4.87373 4.96462 5.03121 5.04170 5.15429 5.19733 5.26885 5.29110 5.38160 5.44255 5.49749 5.59280 5.72537 5.77745 5.81674 6.03763 6.96209 7.23097 7.30715 7.45042 7.45304 7.59128 7.90576 8.47661 8.70092 8.95299 9.37754 10.89243 Molecular weight = 337.09amu Principal moments of inertia in cm(-1) A = 0.022528 B = 0.002198 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.582913 B =12735.686862 C =13871.594745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.051 4.051 3 H 0.102 0.898 4 C -0.167 4.167 5 C 0.404 3.596 6 O -0.415 6.415 7 C -0.213 4.213 8 C 0.003 3.997 9 C -0.080 4.080 10 Cl -0.068 7.068 11 C -0.029 4.029 12 C -0.220 4.220 13 C 0.209 3.791 14 O -0.263 6.263 15 C 0.032 3.968 16 C 0.498 3.502 17 O -0.523 6.523 18 N -0.707 5.707 19 C 0.251 3.749 20 C -0.545 4.545 21 H 0.064 0.936 22 C 0.063 3.937 23 N -0.883 5.883 24 Si 0.905 3.095 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.392 0.608 38 H 0.029 0.971 39 H 0.030 0.970 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.380 24.150 -4.250 30.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.069 4.069 3 H 0.120 0.880 4 C -0.205 4.205 5 C 0.279 3.721 6 O -0.287 6.287 7 C -0.215 4.215 8 C 0.002 3.998 9 C -0.107 4.107 10 Cl -0.039 7.039 11 C -0.048 4.048 12 C -0.239 4.239 13 C 0.159 3.841 14 O -0.172 6.172 15 C -0.047 4.047 16 C 0.280 3.720 17 O -0.399 6.399 18 N -0.358 5.358 19 C 0.131 3.869 20 C -0.583 4.583 21 H 0.083 0.917 22 C -0.141 4.141 23 N -0.521 5.521 24 Si 0.733 3.267 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.162 0.838 34 H 0.166 0.834 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.224 0.776 38 H 0.047 0.953 39 H 0.048 0.952 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.923 23.491 -2.712 29.079 hybrid contribution 0.371 -0.478 -1.720 1.823 sum -16.552 23.013 -4.432 28.692 Atomic orbital electron populations 1.21901 0.92501 1.02906 1.03160 1.20422 0.97256 0.99530 0.89699 0.87953 1.22434 1.01801 0.97624 0.98600 1.22089 0.78277 0.84565 0.87210 1.90693 1.35512 1.35831 1.66631 1.20351 1.06284 0.98663 0.96197 1.20152 0.93235 0.93616 0.92815 1.20105 1.03798 0.94709 0.92049 1.98355 1.70973 1.43644 1.90916 1.20960 0.92622 0.91629 0.99571 1.21210 1.06276 1.01918 0.94460 1.19319 0.87312 0.85618 0.91817 1.86320 1.61136 1.35702 1.34035 1.22844 0.98505 0.93096 0.90233 1.19781 0.81118 0.83135 0.87935 1.90767 1.61069 1.74065 1.14038 1.46347 1.51251 1.28740 1.09450 1.19184 0.90567 0.82764 0.94420 1.21223 1.32894 1.11515 0.92678 0.91749 1.24968 0.95931 0.97300 0.95860 1.69988 1.38104 1.27420 1.16547 0.86334 0.78882 0.80075 0.81453 1.19636 1.20754 1.20759 0.92011 0.91377 0.91290 0.87183 0.87027 0.83775 0.83392 0.88865 0.88875 0.77577 0.95265 0.95235 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 8.92 37.16 0.33 -0.52 16 2 C -0.05 -0.36 3.27 -91.37 -0.30 -0.66 16 3 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 4 C -0.17 -1.34 6.51 -27.51 -0.18 -1.52 16 5 C 0.40 5.39 7.71 -30.72 -0.24 5.15 16 6 O -0.41 -7.59 17.74 5.54 0.10 -7.49 16 7 C -0.21 -2.66 6.10 -104.88 -0.64 -3.30 16 8 C 0.00 0.03 5.44 -104.01 -0.57 -0.54 16 9 C -0.08 -0.69 6.31 -39.50 -0.25 -0.94 16 10 Cl -0.07 -0.50 26.96 -51.86 -1.40 -1.90 16 11 C -0.03 -0.23 9.81 -39.51 -0.39 -0.62 16 12 C -0.22 -2.08 9.01 -39.55 -0.36 -2.43 16 13 C 0.21 2.73 6.75 -38.46 -0.26 2.47 16 14 O -0.26 -4.36 9.35 -39.45 -0.37 -4.73 16 15 C 0.03 0.44 5.22 36.01 0.19 0.63 16 16 C 0.50 10.02 7.91 -10.98 -0.09 9.94 16 17 O -0.52 -13.45 16.50 -14.35 -0.24 -13.68 16 18 N -0.71 -14.39 5.55 -61.47 -0.34 -14.73 16 19 C 0.25 6.58 5.43 -5.19 -0.03 6.55 16 20 C -0.54 -14.50 9.28 -34.44 -0.32 -14.82 16 21 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 23 N -0.88 -25.92 13.29 55.43 0.74 -25.18 16 24 Si 0.91 20.57 29.54 -169.99 -5.02 15.55 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.40 6.37 -51.93 -0.33 0.07 16 31 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.11 0.74 7.68 -51.93 -0.40 0.34 16 33 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 34 H 0.15 1.05 6.28 -52.49 -0.33 0.72 16 35 H 0.09 0.99 7.65 -51.93 -0.40 0.59 16 36 H 0.09 0.98 7.66 -51.93 -0.40 0.59 16 37 H 0.39 6.45 8.32 -40.82 -0.34 6.11 16 38 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 360.13 15.07 5.43 5.43 Total: -1.00 -36.16 360.13 -8.98 -45.13 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -4.69 Total: 0.57 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -3.19 Total: 1.04 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 0.40 Total: -39.91 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -0.51 Total: -25.91 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.40 Total: -1.90 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.16 -8.98 -45.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031857029.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.918 kcal (2) G-P(sol) polarization free energy of solvation -36.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds