Wall clock time and date at job start Tue Mar 31 2020 05:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 120.00063 * 2 1 4 4 C 1.50694 * 109.47179 * 269.99715 * 3 2 1 5 5 H 1.08000 * 119.99805 * 0.02562 * 4 3 2 6 6 C 1.37880 * 120.00173 * 179.97438 * 4 3 2 7 7 N 1.31520 * 120.00249 * 180.02562 * 6 4 3 8 8 Si 1.86803 * 119.99994 * 0.02562 * 6 4 3 9 9 H 1.48502 * 109.47118 * 89.99712 * 8 6 4 10 10 H 1.48494 * 109.47085 * 209.99803 * 8 6 4 11 11 H 1.48497 * 109.47135 * 329.99912 * 8 6 4 12 12 C 1.34778 * 119.99905 * 179.97438 * 2 1 3 13 13 O 1.21280 * 120.00036 * 179.97438 * 12 2 1 14 14 C 1.50697 * 120.00014 * 0.02562 * 12 2 1 15 15 O 1.42896 * 109.47137 * 180.02562 * 14 12 2 16 16 C 1.34915 * 117.00101 * 180.02562 * 15 14 12 17 17 O 1.21636 * 119.99644 * 359.97438 * 16 15 14 18 18 C 1.46188 * 120.00236 * 179.97438 * 16 15 14 19 19 C 1.34963 * 120.00005 * 173.21515 * 18 16 15 20 20 C 1.47118 * 120.00134 * 349.03210 * 19 18 16 21 21 C 1.39888 * 120.15995 * 316.11638 * 20 19 18 22 22 C 1.37836 * 119.83780 * 179.69795 * 21 20 19 23 23 C 1.38557 * 120.15499 * 0.58895 * 22 21 20 24 24 Cl 1.73604 * 119.83575 * 179.70105 * 23 22 21 25 25 C 1.38551 * 120.32238 * 359.68201 * 23 22 21 26 26 C 1.37823 * 120.15924 * 0.02562 * 25 23 22 27 27 H 1.09004 * 109.47082 * 270.00226 * 1 2 3 28 28 H 1.08999 * 109.46988 * 29.99920 * 1 2 3 29 29 H 1.08995 * 109.47326 * 150.00091 * 1 2 3 30 30 H 1.09001 * 109.47295 * 30.00309 * 3 2 1 31 31 H 1.09003 * 109.47421 * 149.99720 * 3 2 1 32 32 H 0.96993 * 120.00027 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47302 * 59.99403 * 14 12 2 34 34 H 1.09013 * 109.46965 * 299.99435 * 14 12 2 35 35 H 1.07998 * 119.99723 * 353.20902 * 18 16 15 36 36 H 1.08000 * 119.99865 * 169.04259 * 19 18 16 37 37 H 1.08005 * 120.07988 * 359.96501 * 21 20 19 38 38 H 1.07994 * 119.91772 * 180.29763 * 22 21 20 39 39 H 1.07999 * 119.91455 * 179.97438 * 25 23 22 40 40 H 1.08002 * 120.08183 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2416 6 6 3.1261 2.8779 -1.6727 7 7 3.3449 3.2578 -2.9127 8 14 3.7330 3.9292 -0.2529 9 1 5.1066 3.5081 0.1230 10 1 3.7479 5.3559 -0.6644 11 1 2.8271 3.7593 0.9114 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1673 0.0001 14 6 1.3854 -2.4723 0.0005 15 8 2.3140 -3.5584 0.0017 16 6 1.7983 -4.8051 0.0013 17 8 0.5924 -4.9644 0.0005 18 6 2.6888 -5.9645 0.0020 19 6 2.1793 -7.2067 0.1397 20 6 0.7717 -7.3855 0.5285 21 6 0.2213 -6.6077 1.5527 22 6 -1.0999 -6.7764 1.9074 23 6 -1.8790 -7.7221 1.2605 24 17 -3.5400 -7.9330 1.7193 25 6 -1.3390 -8.4999 0.2491 26 6 -0.0211 -8.3380 -0.1203 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8899 -0.5138 30 1 1.6085 2.0284 0.5139 31 1 3.1500 1.1384 0.5139 32 1 3.8218 4.0836 -3.0899 33 1 0.7590 -2.5302 -0.8896 34 1 0.7584 -2.5298 0.8904 35 1 3.7543 -5.8270 -0.1079 36 1 2.8049 -8.0694 -0.0354 37 1 0.8289 -5.8738 2.0613 38 1 -1.5275 -6.1733 2.6947 39 1 -1.9521 -9.2354 -0.2505 40 1 0.3984 -8.9447 -0.9092 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033439020.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:53 Heat of formation + Delta-G solvation = -61.487895 kcal Electronic energy + Delta-G solvation = -25534.008939 eV Core-core repulsion = 21534.327636 eV Total energy + Delta-G solvation = -3999.681303 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.091 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.89850 -39.57996 -38.85194 -37.00206 -36.43094 -34.98893 -34.17449 -32.60918 -31.41618 -30.30203 -29.46546 -27.69018 -25.93608 -24.70692 -23.11401 -22.60090 -21.95530 -19.89998 -18.81059 -18.27921 -17.41214 -17.06867 -16.68482 -16.52959 -16.19652 -15.66216 -15.44119 -14.94215 -14.75752 -14.34435 -14.04671 -13.86662 -13.74444 -13.64968 -13.07105 -13.04025 -12.46434 -12.41894 -12.29694 -12.14116 -12.07312 -11.90150 -11.70917 -11.53400 -11.13852 -11.00869 -10.66354 -10.62931 -10.55123 -10.21825 -10.18206 -9.58861 -9.23513 -9.14500 -8.62111 -8.50289 -7.83034 -6.11732 -4.11339 0.14557 1.04463 1.28486 1.83481 2.46873 2.73667 3.14287 3.27346 3.33195 3.35021 3.37424 3.79189 4.24456 4.36684 4.43201 4.53558 4.67275 4.82047 4.91796 4.97454 5.12427 5.13424 5.17953 5.21699 5.34185 5.51424 5.53235 5.60643 5.68138 5.76450 5.92516 5.97013 6.09035 6.13551 6.30266 6.45158 6.61443 6.86288 7.20102 7.55428 7.64859 8.07212 8.41789 8.78671 8.91537 9.47538 11.01534 Molecular weight = 337.09amu Principal moments of inertia in cm(-1) A = 0.020433 B = 0.002184 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.990010 B =12817.851880 C =13646.896641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.593 5.593 3 C 0.217 3.783 4 C -0.532 4.532 5 H 0.075 0.925 6 C 0.073 3.927 7 N -0.896 5.896 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.508 3.492 13 O -0.518 6.518 14 C 0.052 3.948 15 O -0.321 6.321 16 C 0.486 3.514 17 O -0.498 6.498 18 C -0.177 4.177 19 C -0.018 4.018 20 C -0.074 4.074 21 C -0.033 4.033 22 C -0.119 4.119 23 C -0.021 4.021 24 Cl -0.075 7.075 25 C -0.122 4.122 26 C -0.084 4.084 27 H 0.049 0.951 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.034 0.966 31 H 0.039 0.961 32 H 0.265 0.735 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.123 0.877 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.455 -25.292 9.700 28.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.327 5.327 3 C 0.097 3.903 4 C -0.570 4.570 5 H 0.093 0.907 6 C -0.130 4.130 7 N -0.534 5.534 8 Si 0.704 3.296 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.190 1.190 12 C 0.293 3.707 13 O -0.394 6.394 14 C -0.026 4.026 15 O -0.235 6.235 16 C 0.332 3.668 17 O -0.389 6.389 18 C -0.195 4.195 19 C -0.036 4.036 20 C -0.075 4.075 21 C -0.051 4.051 22 C -0.137 4.137 23 C -0.048 4.048 24 Cl -0.046 7.046 25 C -0.141 4.141 26 C -0.103 4.103 27 H 0.068 0.932 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.170 0.830 36 H 0.168 0.832 37 H 0.141 0.859 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.232 -25.130 9.631 28.452 hybrid contribution -0.062 0.851 0.433 0.957 sum -9.294 -24.279 10.064 27.877 Atomic orbital electron populations 1.21759 0.80567 1.03396 1.00838 1.47760 1.06465 1.06576 1.71873 1.19724 0.92526 0.79467 0.98597 1.21308 1.37288 1.07281 0.91159 0.90713 1.24863 0.95170 0.97325 0.95646 1.69895 1.41285 1.23555 1.18674 0.86836 0.80168 0.79765 0.82834 1.19830 1.21011 1.19040 1.19747 0.88119 0.84308 0.78545 1.90715 1.13386 1.86729 1.48555 1.22478 0.91381 0.84562 1.04150 1.86259 1.39857 1.14215 1.83194 1.21524 0.87850 0.83926 0.73538 1.90960 1.16083 1.86289 1.45524 1.22390 1.00550 0.89504 1.07086 1.22515 0.93389 0.96732 0.90947 1.19030 0.93766 0.97258 0.97411 1.21067 0.94341 0.94872 0.94869 1.20862 0.93724 0.98150 1.01005 1.21059 0.85785 0.99372 0.98583 1.98372 1.17812 1.96633 1.91809 1.20869 0.95717 1.00305 0.97197 1.21136 0.93108 0.97043 0.98985 0.93216 0.90019 0.92136 0.94826 0.94349 0.92486 0.88681 0.89007 0.82988 0.83200 0.85898 0.84994 0.84955 0.84903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.16 10.24 59.85 0.61 1.78 16 2 N -0.59 -12.08 2.86 -182.96 -0.52 -12.60 16 3 C 0.22 5.25 4.23 -5.20 -0.02 5.23 16 4 C -0.53 -15.21 9.94 -34.44 -0.34 -15.55 16 5 H 0.07 2.35 8.06 -52.49 -0.42 1.92 16 6 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 7 N -0.90 -27.52 13.96 55.43 0.77 -26.75 16 8 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 9 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 12 C 0.51 10.44 7.75 -10.99 -0.09 10.36 16 13 O -0.52 -12.98 16.08 -14.35 -0.23 -13.21 16 14 C 0.05 0.81 4.41 36.00 0.16 0.97 16 15 O -0.32 -5.06 9.65 -47.84 -0.46 -5.52 16 16 C 0.49 6.25 6.92 33.92 0.23 6.49 16 17 O -0.50 -6.88 11.93 -19.37 -0.23 -7.11 16 18 C -0.18 -1.61 10.04 -37.55 -0.38 -1.99 16 19 C -0.02 -0.13 9.81 -37.14 -0.36 -0.49 16 20 C -0.07 -0.67 4.53 -105.06 -0.48 -1.14 16 21 C -0.03 -0.33 6.60 -39.11 -0.26 -0.59 16 22 C -0.12 -1.16 9.81 -39.61 -0.39 -1.55 16 23 C -0.02 -0.20 6.33 -39.35 -0.25 -0.45 16 24 Cl -0.08 -0.68 28.95 -51.86 -1.50 -2.18 16 25 C -0.12 -1.03 9.81 -39.62 -0.39 -1.42 16 26 C -0.08 -0.67 9.79 -39.12 -0.38 -1.05 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 29 H 0.06 0.76 6.44 -51.93 -0.33 0.42 16 30 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 31 H 0.04 0.99 6.85 -51.93 -0.36 0.63 16 32 H 0.27 7.59 8.31 -40.82 -0.34 7.26 16 33 H 0.10 1.38 7.39 -51.93 -0.38 0.99 16 34 H 0.09 1.19 8.09 -51.92 -0.42 0.77 16 35 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.15 0.54 8.06 -52.49 -0.42 0.11 16 37 H 0.12 1.20 7.04 -52.48 -0.37 0.83 16 38 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 LS Contribution 363.13 15.07 5.47 5.47 Total: -1.00 -35.90 363.13 -8.58 -44.48 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -4.78 Total: -1.87 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -2.43 Total: 2.60 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.25 Total: -39.35 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.92 Total: -25.84 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.90 -8.58 -44.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033439020.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.010 kcal (2) G-P(sol) polarization free energy of solvation -35.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds