Wall clock time and date at job start Tue Mar 31 2020 05:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 119.99964 * 2 1 4 4 C 1.50700 * 109.47531 * 269.99796 * 3 2 1 5 5 H 1.07996 * 119.99522 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99818 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99445 * 180.02562 * 6 4 3 8 8 Si 1.86792 * 120.00287 * 0.02562 * 6 4 3 9 9 H 1.48493 * 109.47330 * 89.99882 * 8 6 4 10 10 H 1.48508 * 109.47114 * 210.00221 * 8 6 4 11 11 H 1.48502 * 109.47100 * 329.99770 * 8 6 4 12 12 C 1.34776 * 119.99985 * 180.02562 * 2 1 3 13 13 O 1.21282 * 120.00100 * 180.02562 * 12 2 1 14 14 C 1.50702 * 119.99971 * 0.02562 * 12 2 1 15 15 O 1.42895 * 109.46971 * 179.97438 * 14 12 2 16 16 C 1.34923 * 117.00130 * 179.97438 * 15 14 12 17 17 O 1.21632 * 119.99289 * 0.02562 * 16 15 14 18 18 C 1.46176 * 120.00122 * 179.97438 * 16 15 14 19 19 C 1.34963 * 120.00032 * 187.08429 * 18 16 15 20 20 C 1.47108 * 119.99791 * 9.50104 * 19 18 16 21 21 C 1.39899 * 120.18157 * 44.85518 * 20 19 18 22 22 C 1.37829 * 119.83765 * 180.02562 * 21 20 19 23 23 C 1.38461 * 120.20881 * 359.97438 * 22 21 20 24 24 C 1.38319 * 120.37280 * 359.97438 * 23 22 21 25 25 C 1.38068 * 120.15906 * 0.02562 * 24 23 22 26 26 Cl 1.73602 * 120.10931 * 179.97438 * 25 24 23 27 27 H 1.08998 * 109.47344 * 269.99698 * 1 2 3 28 28 H 1.09003 * 109.46746 * 29.99755 * 1 2 3 29 29 H 1.08999 * 109.47063 * 149.99725 * 1 2 3 30 30 H 1.08999 * 109.47261 * 30.00707 * 3 2 1 31 31 H 1.09000 * 109.46844 * 150.00118 * 3 2 1 32 32 H 0.96999 * 119.99723 * 179.97438 * 7 6 4 33 33 H 1.08991 * 109.47482 * 59.99607 * 14 12 2 34 34 H 1.09004 * 109.46494 * 299.99249 * 14 12 2 35 35 H 1.07999 * 120.00100 * 7.08466 * 18 16 15 36 36 H 1.08000 * 120.00145 * 189.51098 * 19 18 16 37 37 H 1.07997 * 120.07717 * 0.03529 * 21 20 19 38 38 H 1.08004 * 119.89448 * 179.97438 * 22 21 20 39 39 H 1.08002 * 119.81198 * 179.72417 * 23 22 21 40 40 H 1.08006 * 119.92376 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7038 -1.4208 5 1 2.0975 1.0962 -2.2416 6 6 3.1270 2.8775 -1.6726 7 7 3.3458 3.2574 -2.9126 8 14 3.7351 3.9280 -0.2527 9 1 5.1083 3.5058 0.1228 10 1 3.7509 5.3549 -0.6640 11 1 2.8293 3.7586 0.9118 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3854 -2.4723 -0.0017 15 8 2.3140 -3.5584 -0.0027 16 6 1.7983 -4.8052 -0.0032 17 8 0.5925 -4.9645 -0.0034 18 6 2.6888 -5.9644 -0.0048 19 6 2.1799 -7.2061 -0.1495 20 6 0.7656 -7.3835 -0.5133 21 6 0.1982 -6.6077 -1.5298 22 6 -1.1278 -6.7794 -1.8646 23 6 -1.8986 -7.7172 -1.1985 24 6 -1.3462 -8.4896 -0.1929 25 6 -0.0195 -8.3303 0.1549 26 17 0.6723 -9.3000 1.4177 27 1 -0.3634 -0.0001 1.0276 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6085 2.0284 0.5139 31 1 3.1499 1.1383 0.5138 32 1 3.8226 4.0833 -3.0897 33 1 0.7590 -2.5295 -0.8918 34 1 0.7585 -2.5306 0.8881 35 1 3.7539 -5.8274 0.1099 36 1 2.8110 -8.0693 0.0019 37 1 0.7977 -5.8761 -2.0510 38 1 -1.5669 -6.1807 -2.6489 39 1 -2.9381 -7.8433 -1.4630 40 1 -1.9540 -9.2192 0.3217 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033516339.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:57 Heat of formation + Delta-G solvation = -60.189233 kcal Electronic energy + Delta-G solvation = -25707.175555 eV Core-core repulsion = 21707.550566 eV Total energy + Delta-G solvation = -3999.624989 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.091 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.89017 -39.57071 -38.83815 -36.83603 -36.57093 -34.98854 -34.31440 -32.61192 -31.02870 -30.43697 -29.51500 -27.69661 -25.93955 -24.77231 -22.96019 -22.59383 -21.97104 -19.89186 -18.80749 -18.29639 -17.35364 -17.06473 -16.68274 -16.44845 -16.18764 -15.67890 -15.45308 -14.94161 -14.77145 -14.41106 -14.16521 -14.02378 -13.55343 -13.39447 -13.19816 -12.91398 -12.42815 -12.40699 -12.32330 -12.09194 -12.01772 -11.80078 -11.74460 -11.53515 -11.13594 -11.01362 -10.72595 -10.64564 -10.55745 -10.28731 -10.18173 -9.59100 -9.14322 -8.96520 -8.62292 -8.60817 -7.82885 -6.12104 -4.11626 0.20467 0.97397 1.37564 1.79782 2.48145 2.75616 3.14929 3.27402 3.33247 3.35291 3.40757 3.79558 4.20953 4.36655 4.48047 4.61986 4.74944 4.82729 4.95553 4.98955 5.13564 5.14076 5.17731 5.21527 5.34792 5.51515 5.52538 5.61611 5.75535 5.76630 5.93622 6.06137 6.08489 6.17774 6.31080 6.50163 6.61585 6.86666 7.20262 7.55284 7.66016 8.07411 8.41537 8.79004 8.91035 9.47339 11.01173 Molecular weight = 337.09amu Principal moments of inertia in cm(-1) A = 0.024547 B = 0.002223 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.410740 B =12591.263107 C =13008.806883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.593 5.593 3 C 0.217 3.783 4 C -0.532 4.532 5 H 0.075 0.925 6 C 0.073 3.927 7 N -0.896 5.896 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.508 3.492 13 O -0.518 6.518 14 C 0.052 3.948 15 O -0.320 6.320 16 C 0.487 3.513 17 O -0.498 6.498 18 C -0.173 4.173 19 C -0.017 4.017 20 C -0.069 4.069 21 C -0.032 4.032 22 C -0.124 4.124 23 C -0.094 4.094 24 C -0.125 4.125 25 C -0.015 4.015 26 Cl -0.070 7.070 27 H 0.049 0.951 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.034 0.966 31 H 0.039 0.961 32 H 0.265 0.735 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.153 0.847 36 H 0.150 0.850 37 H 0.124 0.876 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.199 -24.956 6.081 27.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.327 5.327 3 C 0.097 3.903 4 C -0.570 4.570 5 H 0.093 0.907 6 C -0.130 4.130 7 N -0.534 5.534 8 Si 0.704 3.296 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.190 1.190 12 C 0.293 3.707 13 O -0.393 6.393 14 C -0.026 4.026 15 O -0.235 6.235 16 C 0.333 3.667 17 O -0.389 6.389 18 C -0.192 4.192 19 C -0.036 4.036 20 C -0.070 4.070 21 C -0.050 4.050 22 C -0.142 4.142 23 C -0.112 4.112 24 C -0.143 4.143 25 C -0.041 4.041 26 Cl -0.042 7.042 27 H 0.068 0.932 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.171 0.829 36 H 0.168 0.832 37 H 0.142 0.858 38 H 0.147 0.853 39 H 0.148 0.852 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.756 -24.866 6.091 27.397 hybrid contribution 0.162 0.746 0.710 1.043 sum -9.594 -24.119 6.801 26.834 Atomic orbital electron populations 1.21755 0.80589 1.03340 1.00849 1.47758 1.06454 1.06576 1.71909 1.19727 0.92541 0.79468 0.98596 1.21306 1.37256 1.07306 0.91148 0.90715 1.24858 0.95159 0.97330 0.95647 1.69896 1.41303 1.23555 1.18673 0.86837 0.80191 0.79751 0.82834 1.19823 1.21010 1.19038 1.19750 0.88125 0.84306 0.78544 1.90718 1.13384 1.86723 1.48512 1.22473 0.91394 0.84573 1.04125 1.86264 1.39832 1.14188 1.83196 1.21509 0.87828 0.83898 0.73487 1.90945 1.16105 1.86257 1.45555 1.22352 1.00579 0.89329 1.06931 1.22471 0.93293 0.96898 0.90911 1.18759 0.93546 0.96828 0.97859 1.21108 0.95311 0.94378 0.94216 1.21097 0.93906 0.98620 1.00610 1.21184 0.99953 0.95112 0.94953 1.20882 0.93075 1.01375 0.98997 1.20994 0.94115 0.95631 0.93395 1.98366 1.84781 1.69970 1.51036 0.93221 0.90032 0.92163 0.94824 0.94347 0.92488 0.88747 0.88961 0.82885 0.83248 0.85828 0.85309 0.85207 0.85029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.16 10.24 59.85 0.61 1.77 16 2 N -0.59 -12.07 2.86 -182.95 -0.52 -12.60 16 3 C 0.22 5.24 4.23 -5.19 -0.02 5.22 16 4 C -0.53 -15.15 9.94 -34.44 -0.34 -15.49 16 5 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 7 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 8 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 9 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 12 C 0.51 10.47 7.75 -10.98 -0.09 10.38 16 13 O -0.52 -13.01 16.08 -14.36 -0.23 -13.25 16 14 C 0.05 0.82 4.41 36.01 0.16 0.97 16 15 O -0.32 -5.14 9.65 -47.86 -0.46 -5.60 16 16 C 0.49 6.50 6.95 33.92 0.24 6.74 16 17 O -0.50 -7.02 11.84 -19.37 -0.23 -7.25 16 18 C -0.17 -1.75 10.06 -37.56 -0.38 -2.13 16 19 C -0.02 -0.15 8.93 -37.15 -0.33 -0.49 16 20 C -0.07 -0.71 4.54 -105.03 -0.48 -1.19 16 21 C -0.03 -0.33 6.57 -39.11 -0.26 -0.59 16 22 C -0.12 -1.14 10.03 -39.65 -0.40 -1.53 16 23 C -0.09 -0.76 10.04 -39.47 -0.40 -1.16 16 24 C -0.12 -1.08 9.82 -39.61 -0.39 -1.46 16 25 C -0.01 -0.14 6.36 -38.99 -0.25 -0.39 16 26 Cl -0.07 -0.62 27.97 -51.86 -1.45 -2.07 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 29 H 0.06 0.74 6.44 -51.93 -0.33 0.41 16 30 H 0.03 0.77 7.13 -51.93 -0.37 0.39 16 31 H 0.04 0.99 6.85 -51.93 -0.36 0.64 16 32 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 33 H 0.09 1.32 7.39 -51.93 -0.38 0.94 16 34 H 0.09 1.23 8.09 -51.93 -0.42 0.81 16 35 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.15 0.93 7.94 -52.49 -0.42 0.51 16 37 H 0.12 1.31 7.05 -52.49 -0.37 0.94 16 38 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 39 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 40 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 LS Contribution 361.61 15.07 5.45 5.45 Total: -1.00 -35.57 361.61 -8.53 -44.09 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -4.77 Total: -1.45 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -2.41 Total: 2.66 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.25 Total: -39.28 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.92 Total: -26.10 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.45 Total: -2.07 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.57 -8.53 -44.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033516339.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.095 kcal (2) G-P(sol) polarization free energy of solvation -35.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds