Wall clock time and date at job start Tue Mar 31 2020 05:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86802 * 120.00010 * 2 1 4 4 H 1.48496 * 109.47263 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47279 * 300.00241 * 3 2 1 6 6 H 1.48504 * 109.46929 * 59.99434 * 3 2 1 7 7 C 1.38819 * 120.00299 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00051 * 180.02562 * 7 2 1 9 9 O 1.34844 * 119.99869 * 359.97438 * 7 2 1 10 10 C 1.34756 * 117.00100 * 179.97438 * 9 7 2 11 11 O 1.21541 * 120.00247 * 0.02562 * 10 9 7 12 12 C 1.47426 * 120.00384 * 180.02562 * 10 9 7 13 13 C 1.39620 * 120.21516 * 353.76788 * 12 10 9 14 14 C 1.37898 * 119.95548 * 179.76838 * 13 12 10 15 15 C 1.38546 * 120.41545 * 0.51595 * 14 13 12 16 16 C 1.38032 * 120.45310 * 359.73713 * 15 14 13 17 17 C 1.39197 * 120.02730 * 0.02562 * 16 15 14 18 18 C 1.48172 * 120.20458 * 179.97438 * 17 16 15 19 19 C 1.39450 * 120.13192 * 119.39631 * 18 17 16 20 20 C 1.37987 * 119.86517 * 179.76440 * 19 18 17 21 21 C 1.38348 * 120.13114 * 0.53316 * 20 19 18 22 22 C 1.50697 * 119.86598 * 179.72143 * 21 20 19 23 23 F 1.39898 * 109.47232 * 269.97195 * 22 21 20 24 24 F 1.39899 * 109.47345 * 29.97834 * 22 21 20 25 25 F 1.39906 * 109.47010 * 149.97547 * 22 21 20 26 26 C 1.38347 * 120.26697 * 359.69532 * 21 20 19 27 27 C 1.37988 * 120.13079 * 0.04550 * 26 21 20 28 28 H 0.96999 * 119.99979 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.02238 * 0.02562 * 13 12 10 30 30 H 1.08000 * 119.79213 * 180.25870 * 14 13 12 31 31 H 1.07999 * 119.77336 * 179.76387 * 15 14 13 32 32 H 1.08001 * 119.98755 * 179.97438 * 16 15 14 33 33 H 1.07997 * 120.06625 * 0.02562 * 19 18 17 34 34 H 1.07996 * 119.93895 * 180.24919 * 20 19 18 35 35 H 1.07993 * 119.93393 * 180.02562 * 26 21 20 36 36 H 1.07992 * 120.06696 * 180.02562 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8892 2.3965 1.2125 7 6 2.0083 -1.2022 -0.0005 8 1 3.0883 -1.2021 -0.0001 9 8 1.3341 -2.3700 -0.0005 10 6 2.0680 -3.5001 -0.0016 11 8 3.2818 -3.4366 -0.0021 12 6 1.3988 -4.8138 -0.0023 13 6 0.0112 -4.8955 0.1292 14 6 -0.6097 -6.1268 0.1231 15 6 0.1360 -7.2877 -0.0021 16 6 1.5093 -7.2270 -0.1279 17 6 2.1548 -5.9938 -0.1290 18 6 3.6288 -5.9240 -0.2632 19 6 4.2025 -5.2503 -1.3410 20 6 5.5758 -5.1846 -1.4579 21 6 6.3831 -5.7949 -0.5146 22 6 7.8822 -5.7247 -0.6516 23 9 8.3334 -6.8157 -1.4022 24 9 8.2363 -4.5356 -1.2978 25 9 8.4686 -5.7579 0.6182 26 6 5.8197 -6.4688 0.5542 27 6 4.4477 -6.5367 0.6848 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5758 -3.9948 0.2314 30 1 -1.6836 -6.1867 0.2208 31 1 -0.3606 -8.2468 -0.0018 32 1 2.0832 -8.1367 -0.2247 33 1 3.5732 -4.7773 -2.0803 34 1 6.0214 -4.6597 -2.2899 35 1 6.4550 -6.9429 1.2877 36 1 4.0091 -7.0627 1.5197 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035605628.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:30 Heat of formation + Delta-G solvation = -173.829834 kcal Electronic energy + Delta-G solvation = -28092.543782 eV Core-core repulsion = 23478.159893 eV Total energy + Delta-G solvation = -4614.383890 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.076 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.08087 -47.58833 -47.55501 -40.08875 -38.71455 -37.97144 -35.25164 -32.94543 -32.28301 -31.12032 -30.80162 -29.72345 -26.08141 -25.44234 -23.50481 -22.84265 -22.42770 -21.06843 -20.02182 -18.42924 -18.34355 -18.25124 -17.81771 -17.35195 -16.46374 -15.37731 -15.15210 -14.73787 -14.70114 -14.58484 -14.37983 -14.33492 -14.24662 -14.17300 -14.00578 -13.83979 -13.79381 -13.71040 -13.24330 -12.83616 -12.75467 -12.48520 -12.29062 -11.78925 -11.59195 -11.33199 -11.26782 -11.08055 -10.86828 -10.51634 -10.46880 -9.91780 -9.56612 -8.96219 -8.76814 -8.71577 -8.62852 -8.15678 -6.55227 -4.16378 0.81139 1.24199 1.54995 1.59466 2.76518 3.05413 3.13657 3.21000 3.38374 3.71638 3.83288 3.84789 4.13342 4.20238 4.43490 4.52876 4.66129 4.98173 5.00559 5.05968 5.07982 5.16350 5.37903 5.46240 5.57739 5.70028 5.80240 5.85560 6.03838 6.09750 6.31388 6.32168 6.38769 6.54362 6.59685 6.67256 6.89366 6.96955 7.06018 7.29661 7.83153 8.62074 8.93992 9.73722 10.62207 Molecular weight = 336.08amu Principal moments of inertia in cm(-1) A = 0.009190 B = 0.004371 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3045.967358 B = 6404.025304 C = 9061.383073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.042 3.958 3 Si 0.943 3.057 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.370 4.370 8 H 0.099 0.901 9 O -0.203 6.203 10 C 0.422 3.578 11 O -0.538 6.538 12 C -0.072 4.072 13 C -0.073 4.073 14 C -0.126 4.126 15 C -0.109 4.109 16 C -0.115 4.115 17 C -0.020 4.020 18 C 0.009 3.991 19 C -0.049 4.049 20 C -0.073 4.073 21 C -0.187 4.187 22 C 0.509 3.491 23 F -0.182 7.182 24 F -0.178 7.178 25 F -0.180 7.180 26 C -0.078 4.078 27 C -0.110 4.110 28 H 0.271 0.729 29 H 0.144 0.856 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.273 -14.737 -1.019 15.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.163 4.163 3 Si 0.767 3.233 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.446 4.446 8 H 0.117 0.883 9 O -0.110 6.110 10 C 0.270 3.730 11 O -0.436 6.436 12 C -0.073 4.073 13 C -0.091 4.091 14 C -0.144 4.144 15 C -0.127 4.127 16 C -0.133 4.133 17 C -0.021 4.021 18 C 0.009 3.991 19 C -0.067 4.067 20 C -0.091 4.091 21 C -0.189 4.189 22 C 0.455 3.545 23 F -0.163 7.163 24 F -0.159 7.159 25 F -0.162 7.162 26 C -0.097 4.097 27 C -0.128 4.128 28 H 0.081 0.919 29 H 0.161 0.839 30 H 0.144 0.856 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.437 -14.520 -1.022 15.538 hybrid contribution 0.544 1.018 0.077 1.157 sum 5.981 -13.502 -0.945 14.797 Atomic orbital electron populations 1.69973 1.06102 1.27941 1.45251 1.25388 0.95841 0.98999 0.96106 0.85602 0.79602 0.79814 0.78254 1.18780 1.20029 1.20040 1.21376 0.92615 0.79642 1.50958 0.88300 1.83886 1.39332 1.13299 1.74488 1.20657 0.86084 0.85360 0.80868 1.90704 1.14510 1.87367 1.51027 1.19478 0.93528 0.91059 1.03224 1.21616 0.93481 0.98847 0.95175 1.21198 1.00160 0.92191 1.00808 1.21162 0.93717 0.98448 0.99408 1.21032 0.94619 0.96099 1.01573 1.18721 0.91651 0.92231 0.99485 1.18749 0.91488 0.94793 0.94112 1.20962 0.93836 0.94749 0.97187 1.20687 0.93578 0.97008 0.97870 1.19851 0.89973 1.07900 1.01141 1.18385 0.89051 0.73527 0.73509 1.93196 1.90969 1.55198 1.76969 1.93189 1.93376 1.47463 1.81876 1.93170 1.86368 1.96161 1.40476 1.20638 0.95324 0.97675 0.96015 1.21009 0.92413 1.00569 0.98849 0.91874 0.83852 0.85565 0.85769 0.85483 0.85499 0.85143 0.85199 0.85251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.10 13.67 55.49 0.76 -23.34 16 2 C 0.04 1.13 5.50 -17.52 -0.10 1.04 16 3 Si 0.94 20.75 29.55 -169.99 -5.02 15.72 16 4 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.37 -10.55 9.65 30.95 0.30 -10.25 16 8 H 0.10 2.85 6.86 -52.48 -0.36 2.49 16 9 O -0.20 -5.60 9.01 -21.68 -0.20 -5.80 16 10 C 0.42 10.19 7.63 34.47 0.26 10.45 16 11 O -0.54 -13.53 11.73 -19.30 -0.23 -13.76 16 12 C -0.07 -1.38 5.88 -104.71 -0.62 -2.00 16 13 C -0.07 -1.24 9.61 -39.19 -0.38 -1.62 16 14 C -0.13 -1.65 10.02 -39.59 -0.40 -2.05 16 15 C -0.11 -1.27 10.02 -39.54 -0.40 -1.67 16 16 C -0.12 -1.47 9.67 -39.30 -0.38 -1.85 16 17 C -0.02 -0.33 5.39 -104.53 -0.56 -0.90 16 18 C 0.01 0.14 4.06 -104.91 -0.43 -0.28 16 19 C -0.05 -0.84 6.95 -39.22 -0.27 -1.11 16 20 C -0.07 -1.15 9.38 -39.63 -0.37 -1.52 16 21 C -0.19 -2.78 5.46 -104.54 -0.57 -3.35 16 22 C 0.51 7.08 3.36 36.00 0.12 7.20 16 23 F -0.18 -2.41 17.30 2.25 0.04 -2.37 16 24 F -0.18 -2.61 16.45 2.25 0.04 -2.57 16 25 F -0.18 -2.49 16.45 2.25 0.04 -2.45 16 26 C -0.08 -1.08 9.38 -39.63 -0.37 -1.46 16 27 C -0.11 -1.59 9.68 -39.22 -0.38 -1.97 16 28 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.14 2.63 7.62 -52.49 -0.40 2.23 16 30 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.13 2.20 7.99 -52.49 -0.42 1.78 16 34 H 0.13 1.84 7.59 -52.49 -0.40 1.44 16 35 H 0.13 1.48 7.59 -52.49 -0.40 1.08 16 36 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 LS Contribution 335.32 15.07 5.05 5.05 Total: -1.00 -31.09 335.32 -6.86 -37.95 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -2.80 Total: 2.89 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -4.53 Total: -11.33 kcal Atomic # 7 Polarization: -24.10 SS G_CDS: 0.76 Total: -23.34 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.42 Total: -19.56 kcal Atomic # 9 Polarization: -7.50 SS G_CDS: 0.11 Total: -7.39 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.09 -6.86 -37.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035605628.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.879 kcal (2) G-P(sol) polarization free energy of solvation -31.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds