Wall clock time and date at job start Tue Mar 31 2020 05:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30843 * 125.90095 * 2 1 4 4 N 1.40080 * 108.20533 * 180.02562 * 3 2 1 5 5 C 1.46498 * 126.03821 * 179.97438 * 4 3 2 6 6 C 1.50704 * 109.46995 * 270.02551 * 5 4 3 7 7 H 1.07997 * 119.99837 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99838 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99872 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 120.00072 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.46769 * 90.00224 * 10 8 6 12 12 H 1.48501 * 109.47012 * 210.00073 * 10 8 6 13 13 H 1.48496 * 109.47239 * 330.00275 * 10 8 6 14 14 C 1.34950 * 107.92794 * 0.02562 * 4 3 2 15 15 C 1.50703 * 126.12738 * 179.97438 * 14 4 3 16 16 C 1.35315 * 107.74654 * 0.22852 * 14 4 3 17 17 C 1.50694 * 126.04050 * 179.76869 * 16 14 4 18 18 C 1.52999 * 109.47096 * 90.00060 * 17 16 14 19 19 C 1.50701 * 109.47155 * 179.97438 * 18 17 16 20 20 O 1.21277 * 119.99994 * 0.02562 * 19 18 17 21 21 N 1.34773 * 120.00016 * 179.97438 * 19 18 17 22 22 C 1.47148 * 120.98297 * 359.72322 * 21 19 18 23 23 C 1.53714 * 108.16388 * 129.42775 * 22 21 19 24 24 O 1.42966 * 109.14699 * 52.54091 * 23 22 21 25 25 C 1.42966 * 114.16369 * 297.28707 * 24 23 22 26 26 H 1.08997 * 109.55221 * 302.63143 * 25 24 23 27 27 C 1.52992 * 109.51119 * 182.50367 * 25 24 23 28 28 C 1.47154 * 120.98328 * 179.97438 * 21 19 18 29 29 H 1.08993 * 109.47448 * 90.01700 * 1 2 3 30 30 H 1.09002 * 109.47103 * 210.01919 * 1 2 3 31 31 H 1.08998 * 109.46587 * 330.01923 * 1 2 3 32 32 H 1.09004 * 109.46935 * 30.02012 * 5 4 3 33 33 H 1.09001 * 109.47683 * 150.02712 * 5 4 3 34 34 H 0.96996 * 120.00066 * 179.97438 * 9 8 6 35 35 H 1.09002 * 109.47152 * 90.02651 * 15 14 4 36 36 H 1.09001 * 109.46980 * 330.02751 * 15 14 4 37 37 H 1.09004 * 109.47113 * 210.02732 * 15 14 4 38 38 H 1.09004 * 109.46795 * 209.99972 * 17 16 14 39 39 H 1.08998 * 109.47253 * 329.99922 * 17 16 14 40 40 H 1.09004 * 109.47226 * 299.99648 * 18 17 16 41 41 H 1.08998 * 109.47182 * 59.99819 * 18 17 16 42 42 H 1.09001 * 109.68595 * 249.20942 * 22 21 19 43 43 H 1.09000 * 109.68432 * 9.76056 * 22 21 19 44 44 H 1.08990 * 109.65960 * 292.57325 * 23 22 21 45 45 H 1.09003 * 109.44643 * 172.36982 * 23 22 21 46 46 H 1.09000 * 109.47330 * 300.25616 * 27 25 24 47 47 H 1.08997 * 109.47524 * 60.25558 * 27 25 24 48 48 H 1.08996 * 109.47414 * 180.25335 * 27 25 24 49 49 H 1.08997 * 109.68405 * 350.24446 * 28 21 19 50 50 H 1.09004 * 109.67616 * 110.79336 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6341 -0.0006 5 6 4.7899 1.5007 -0.0013 6 6 5.1939 1.7981 -1.4224 7 1 4.6276 1.3827 -2.2429 8 6 6.2863 2.6005 -1.6751 9 7 6.6391 2.8596 -2.9152 10 14 7.2653 3.3194 -0.2558 11 1 8.3535 2.3815 0.1201 12 1 7.8528 4.6195 -0.6681 13 1 6.3680 3.5288 0.9087 14 6 3.6142 -0.7154 -0.0015 15 6 4.8350 -1.5990 -0.0030 16 6 2.3271 -1.1331 -0.0067 17 6 1.8600 -2.5657 -0.0143 18 6 1.6982 -3.0572 1.4255 19 6 1.2304 -4.4897 1.4179 20 8 1.0451 -5.0614 0.3645 21 7 1.0189 -5.1358 2.5816 22 6 1.2438 -4.4652 3.8720 23 6 -0.0089 -4.6647 4.7403 24 8 -0.3239 -6.0581 4.7959 25 6 -0.6522 -6.6349 3.5296 26 1 -1.4925 -6.0971 3.0907 27 6 -1.0297 -8.1052 3.7203 28 6 0.5616 -6.5343 2.5993 29 1 -0.3634 -0.0003 -1.0276 30 1 -0.3633 -0.8898 0.5141 31 1 -0.3632 0.8902 0.5135 32 1 4.5567 2.4331 0.5128 33 1 5.6098 0.9980 0.5117 34 1 7.4074 3.4243 -3.0929 35 1 5.1298 -1.8131 1.0244 36 1 5.6510 -1.0905 -0.5166 37 1 4.6074 -2.5325 -0.5177 38 1 0.9024 -2.6329 -0.5309 39 1 2.5947 -3.1848 -0.5292 40 1 2.6557 -2.9900 1.9421 41 1 0.9635 -2.4381 1.9403 42 1 2.1106 -4.9030 4.3671 43 1 1.4126 -3.4009 3.7082 44 1 -0.8466 -4.1191 4.3062 45 1 0.1849 -4.2949 5.7472 46 1 -0.1895 -8.6419 4.1610 47 1 -1.8931 -8.1758 4.3819 48 1 -1.2755 -8.5455 2.7540 49 1 0.2786 -6.8409 1.5924 50 1 1.3608 -7.1772 2.9683 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036723536.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:22 Heat of formation + Delta-G solvation = -19.779694 kcal Electronic energy + Delta-G solvation = -29230.826677 eV Core-core repulsion = 25259.348326 eV Total energy + Delta-G solvation = -3971.478351 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.83303 -40.49409 -38.69808 -35.07278 -34.54992 -33.64105 -33.16185 -32.51210 -30.57095 -29.32540 -29.12581 -27.69098 -26.13525 -26.09764 -23.85154 -23.59583 -21.99158 -21.45699 -19.35246 -18.90716 -18.72444 -17.42354 -17.14456 -17.02925 -16.24409 -16.04461 -15.70863 -15.40962 -15.03183 -14.73196 -14.35301 -14.19930 -13.88539 -13.41279 -13.26682 -13.18485 -12.94302 -12.84929 -12.72151 -12.59665 -12.52940 -12.32957 -12.16120 -12.09264 -11.98034 -11.87036 -11.67237 -11.54432 -11.31883 -11.09788 -11.00758 -10.81236 -10.73560 -10.52289 -10.23348 -9.92553 -9.71294 -9.68193 -8.87709 -8.81373 -8.26880 -7.55351 -6.28906 -4.32327 2.47163 2.54300 2.68136 3.11147 3.19233 3.20192 3.25960 3.29593 3.46660 4.18644 4.20647 4.31805 4.55202 4.56823 4.68193 4.72542 4.88546 4.97344 5.07923 5.11621 5.14933 5.18302 5.24794 5.28047 5.30015 5.36732 5.38038 5.52986 5.58793 5.66334 5.69878 5.77732 5.87791 5.88936 5.92695 5.95796 6.08033 6.17437 6.29074 6.30510 6.41321 6.48636 6.70010 6.77858 6.90384 7.06631 7.26081 7.39142 7.82868 7.97949 8.28547 8.56258 8.76638 9.26080 10.83574 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021593 B = 0.002274 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.390689 B =12310.265780 C =12481.598981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.054 3.946 3 N -0.293 5.293 4 N -0.325 5.325 5 C 0.230 3.770 6 C -0.541 4.541 7 H 0.080 0.920 8 C 0.079 3.921 9 N -0.885 5.885 10 Si 0.873 3.127 11 H -0.271 1.271 12 H -0.279 1.279 13 H -0.264 1.264 14 C 0.097 3.903 15 C -0.094 4.094 16 C -0.265 4.265 17 C -0.011 4.011 18 C -0.132 4.132 19 C 0.517 3.483 20 O -0.536 6.536 21 N -0.624 5.624 22 C 0.071 3.929 23 C 0.048 3.952 24 O -0.378 6.378 25 C 0.073 3.927 26 H 0.063 0.937 27 C -0.144 4.144 28 C 0.082 3.918 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.043 0.957 34 H 0.269 0.731 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.100 0.900 44 H 0.057 0.943 45 H 0.107 0.893 46 H 0.066 0.934 47 H 0.067 0.933 48 H 0.075 0.925 49 H 0.101 0.899 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.626 -18.554 16.688 27.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.111 4.111 3 N -0.117 5.117 4 N -0.104 5.104 5 C 0.111 3.889 6 C -0.580 4.580 7 H 0.098 0.902 8 C -0.126 4.126 9 N -0.522 5.522 10 Si 0.699 3.301 11 H -0.196 1.196 12 H -0.205 1.205 13 H -0.188 1.188 14 C -0.034 4.034 15 C -0.152 4.152 16 C -0.277 4.277 17 C -0.050 4.050 18 C -0.172 4.172 19 C 0.307 3.693 20 O -0.412 6.412 21 N -0.359 5.359 22 C -0.052 4.052 23 C -0.030 4.030 24 O -0.297 6.297 25 C 0.015 3.985 26 H 0.081 0.919 27 C -0.201 4.201 28 C -0.041 4.041 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.097 0.903 43 H 0.118 0.882 44 H 0.076 0.924 45 H 0.125 0.875 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.094 0.906 49 H 0.119 0.881 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.395 -17.439 16.146 26.804 hybrid contribution 0.792 -0.041 0.401 0.889 sum -11.603 -17.480 16.547 26.721 Atomic orbital electron populations 1.20030 0.87891 1.02050 1.02337 1.21975 0.96171 0.90686 1.02221 1.77276 0.87179 1.22604 1.24608 1.48790 1.05436 1.03999 1.52164 1.19964 0.79405 0.89834 0.99695 1.21167 1.13968 1.32479 0.90352 0.90153 1.24821 0.96640 0.95306 0.95798 1.69872 1.26790 1.36922 1.18627 0.86900 0.80836 0.79566 0.82824 1.19639 1.20453 1.18839 1.20766 0.96246 0.85384 1.00990 1.20436 0.94446 0.98066 1.02243 1.19348 0.91323 0.95107 1.21929 1.19417 1.01783 0.90786 0.93057 1.21780 1.02850 0.91081 1.01461 1.21100 0.76336 0.89245 0.82606 1.90692 1.51300 1.68767 1.30414 1.48247 1.68282 1.13180 1.06216 1.22559 0.98938 0.99472 0.84230 1.23055 0.95995 0.82808 1.01104 1.87967 1.89065 1.23123 1.29562 1.22490 0.95888 0.95671 0.84448 0.91880 1.21729 1.02582 0.92962 1.02856 1.22297 0.96919 0.82781 1.02067 0.91192 0.91458 0.91555 0.93278 0.93954 0.92094 0.91270 0.89878 0.90419 0.91156 0.91226 0.88984 0.89024 0.90342 0.88196 0.92424 0.87480 0.91509 0.91398 0.90633 0.88081 0.90851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.88 10.12 36.00 0.36 -0.52 16 2 C 0.05 1.00 7.22 -82.40 -0.59 0.40 16 3 N -0.29 -6.54 12.58 33.67 0.42 -6.12 16 4 N -0.32 -7.30 3.60 -58.31 -0.21 -7.51 16 5 C 0.23 5.48 4.89 -5.19 -0.03 5.45 16 6 C -0.54 -15.13 9.94 -34.44 -0.34 -15.47 16 7 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 8 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 9 N -0.89 -26.29 13.96 55.43 0.77 -25.52 16 10 Si 0.87 20.04 27.47 -169.99 -4.67 15.37 16 11 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.26 -5.80 6.54 56.52 0.37 -5.43 16 14 C 0.10 1.86 6.93 -82.26 -0.57 1.29 16 15 C -0.09 -1.47 9.69 36.01 0.35 -1.12 16 16 C -0.27 -4.58 5.35 -105.05 -0.56 -5.14 16 17 C -0.01 -0.16 4.45 -27.89 -0.12 -0.29 16 18 C -0.13 -1.44 4.05 -27.88 -0.11 -1.56 16 19 C 0.52 6.14 7.71 -10.99 -0.08 6.05 16 20 O -0.54 -8.23 15.45 5.56 0.09 -8.15 16 21 N -0.62 -5.89 3.01 -172.04 -0.52 -6.41 16 22 C 0.07 0.48 6.57 -3.32 -0.02 0.46 16 23 C 0.05 0.30 7.00 37.53 0.26 0.57 16 24 O -0.38 -3.18 10.38 -35.23 -0.37 -3.54 16 25 C 0.07 0.55 3.40 -26.60 -0.09 0.46 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 C -0.14 -0.81 9.57 37.15 0.36 -0.45 16 28 C 0.08 0.71 5.92 -3.55 -0.02 0.69 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.75 7.95 -51.93 -0.41 0.34 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.05 1.19 7.20 -51.93 -0.37 0.81 16 33 H 0.04 0.92 7.09 -51.93 -0.37 0.56 16 34 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 1.45 7.72 -51.93 -0.40 1.05 16 37 H 0.08 1.08 7.14 -51.93 -0.37 0.71 16 38 H 0.07 1.00 7.91 -51.93 -0.41 0.59 16 39 H 0.07 1.02 7.10 -51.93 -0.37 0.65 16 40 H 0.09 0.92 8.00 -51.93 -0.42 0.51 16 41 H 0.09 0.88 7.67 -51.93 -0.40 0.48 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.10 0.57 6.05 -51.93 -0.31 0.26 16 44 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 48 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.10 0.98 7.08 -51.93 -0.37 0.61 16 50 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 402.31 15.07 6.06 6.06 Total: -1.00 -34.44 402.31 -8.18 -42.61 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -8.44 Total: 0.28 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -1.32 Total: -7.08 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 0.47 Total: -45.56 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -0.28 Total: -11.69 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.67 Total: 15.37 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.44 -8.18 -42.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036723536.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.831 kcal (2) G-P(sol) polarization free energy of solvation -34.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds