Wall clock time and date at job start Tue Mar 31 2020 05:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30839 * 125.90099 * 2 1 4 4 N 1.40084 * 108.20323 * 180.26046 * 3 2 1 5 5 C 1.46509 * 126.03353 * 179.74227 * 4 3 2 6 6 C 1.50701 * 109.46877 * 269.97287 * 5 4 3 7 7 H 1.08001 * 120.00068 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99928 * 180.02562 * 6 5 4 9 9 N 1.31507 * 119.99784 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99966 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47315 * 89.99803 * 10 8 6 12 12 H 1.48496 * 109.47269 * 209.99911 * 10 8 6 13 13 H 1.48501 * 109.47288 * 329.99894 * 10 8 6 14 14 C 1.34943 * 107.93063 * 359.71859 * 4 3 2 15 15 C 1.50702 * 126.12908 * 179.97438 * 14 4 3 16 16 C 1.35319 * 107.74203 * 0.02562 * 14 4 3 17 17 C 1.50705 * 126.03900 * 180.02562 * 16 14 4 18 18 C 1.52993 * 109.47345 * 89.99639 * 17 16 14 19 19 C 1.50697 * 109.47107 * 180.02562 * 18 17 16 20 20 O 1.21252 * 120.00171 * 0.02562 * 19 18 17 21 21 N 1.34783 * 120.00102 * 179.97438 * 19 18 17 22 22 C 1.38224 * 119.99764 * 180.02562 * 21 19 18 23 23 N 1.28122 * 125.05771 * 0.07163 * 22 21 19 24 24 C 1.44594 * 120.01335 * 180.02562 * 23 22 21 25 25 C 1.53682 * 111.13865 * 359.89281 * 24 23 22 26 26 S 1.76762 * 125.00584 * 180.02562 * 22 21 19 27 27 H 1.09002 * 109.46877 * 270.21068 * 1 2 3 28 28 H 1.08995 * 109.46882 * 30.21365 * 1 2 3 29 29 H 1.09001 * 109.47133 * 150.21182 * 1 2 3 30 30 H 1.08997 * 109.47297 * 29.97212 * 5 4 3 31 31 H 1.09002 * 109.47113 * 149.97430 * 5 4 3 32 32 H 0.97001 * 119.99850 * 180.02562 * 9 8 6 33 33 H 1.08995 * 109.46722 * 270.01978 * 15 14 4 34 34 H 1.08998 * 109.46983 * 30.02726 * 15 14 4 35 35 H 1.09008 * 109.47034 * 150.02225 * 15 14 4 36 36 H 1.09000 * 109.46723 * 329.99503 * 17 16 14 37 37 H 1.08995 * 109.46852 * 209.99983 * 17 16 14 38 38 H 1.09000 * 109.47321 * 60.00230 * 18 17 16 39 39 H 1.08995 * 109.47426 * 299.99992 * 18 17 16 40 40 H 0.96994 * 119.99675 * 0.02562 * 21 19 18 41 41 H 1.09002 * 109.13781 * 239.47701 * 24 23 22 42 42 H 1.09001 * 109.13856 * 120.30769 * 24 23 22 43 43 H 1.08998 * 110.66241 * 118.49394 * 25 24 23 44 44 H 1.09001 * 110.66234 * 241.60821 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0060 5 6 4.7900 1.5007 -0.0134 6 6 5.1881 1.7950 -1.4368 7 1 4.6186 1.3778 -2.2541 8 6 6.2802 2.5960 -1.6956 9 7 6.9745 3.1027 -0.7003 10 14 6.7741 2.9602 -3.4599 11 1 6.0772 4.1858 -3.9262 12 1 8.2427 3.1691 -3.5297 13 1 6.3953 1.8153 -4.3264 14 6 3.6143 -0.7154 -0.0034 15 6 4.8351 -1.5990 -0.0084 16 6 2.3271 -1.1330 0.0036 17 6 1.8599 -2.5658 0.0092 18 6 1.7084 -3.0472 1.4535 19 6 1.2418 -4.4801 1.4591 20 8 1.0498 -5.0593 0.4113 21 7 1.0388 -5.1182 2.6288 22 6 0.6113 -6.4327 2.6338 23 7 0.3800 -7.1353 1.5877 24 6 -0.0655 -8.5045 1.7201 25 6 -0.1901 -8.9064 3.1982 26 16 0.3039 -7.3934 4.0853 27 1 -0.3633 0.0038 1.0277 28 1 -0.3633 0.8880 -0.5171 29 1 -0.3633 -0.8919 -0.5105 30 1 4.5589 2.4342 0.4996 31 1 5.6119 0.9991 0.4975 32 1 7.7425 3.6665 -0.8824 33 1 5.1237 -1.8138 -1.0373 34 1 5.6539 -1.0902 0.5002 35 1 4.6103 -2.5322 0.5082 36 1 2.5910 -3.1884 -0.5066 37 1 0.8988 -2.6365 -0.5000 38 1 0.9773 -2.4246 1.9693 39 1 2.6695 -2.9765 1.9627 40 1 1.1928 -4.6550 3.4670 41 1 0.6519 -9.1628 1.2300 42 1 -1.0368 -8.6125 1.2373 43 1 -1.2190 -9.1740 3.4386 44 1 0.4868 -9.7282 3.4317 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036724927.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:30 Heat of formation + Delta-G solvation = 52.593580 kcal Electronic energy + Delta-G solvation = -25749.226124 eV Core-core repulsion = 22022.379979 eV Total energy + Delta-G solvation = -3726.846145 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.136 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.73607 -40.30511 -37.83532 -35.08818 -34.43316 -33.43129 -32.50251 -30.82892 -30.00522 -28.98078 -27.07417 -25.89550 -25.31335 -24.01930 -22.64148 -21.79019 -19.77437 -19.05042 -18.82447 -18.66067 -16.93594 -16.69706 -16.43328 -16.19121 -15.73160 -15.42793 -14.68165 -14.42779 -14.20350 -14.04897 -13.90742 -13.61993 -13.14811 -13.05867 -12.91746 -12.65534 -12.50971 -12.36464 -12.21012 -12.04187 -11.81725 -11.67667 -11.47548 -11.36047 -11.29240 -10.99096 -10.81100 -10.77819 -10.40025 -10.26070 -9.75152 -9.65231 -9.59904 -9.38433 -8.65900 -8.34502 -8.20408 -7.51042 -6.27710 -4.34940 0.67040 1.41475 1.45229 2.56609 2.61962 2.76213 3.20856 3.27098 3.31223 3.34506 3.59070 3.88539 4.19493 4.28047 4.28699 4.68890 4.89391 5.05753 5.10706 5.14688 5.16914 5.17227 5.30520 5.36194 5.62013 5.65307 5.78703 5.91975 5.92404 5.96311 5.99681 6.03499 6.21831 6.34964 6.39834 6.51401 6.55594 6.82316 7.01263 7.09811 7.38477 7.49066 7.65131 7.86965 7.87691 8.03478 8.64935 8.73998 9.31572 10.79903 Molecular weight = 336.14amu Principal moments of inertia in cm(-1) A = 0.023572 B = 0.002040 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.547756 B =13721.538833 C =14032.940332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.052 3.948 3 N -0.297 5.297 4 N -0.324 5.324 5 C 0.257 3.743 6 C -0.535 4.535 7 H 0.064 0.936 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.906 3.094 11 H -0.277 1.277 12 H -0.283 1.283 13 H -0.272 1.272 14 C 0.095 3.905 15 C -0.087 4.087 16 C -0.271 4.271 17 C -0.011 4.011 18 C -0.128 4.128 19 C 0.508 3.492 20 O -0.468 6.468 21 N -0.640 5.640 22 C 0.406 3.594 23 N -0.526 5.526 24 C 0.054 3.946 25 C -0.108 4.108 26 S -0.201 6.201 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.268 0.732 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.424 0.576 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.111 0.889 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.669 -21.618 10.793 27.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.113 4.113 3 N -0.120 5.120 4 N -0.104 5.104 5 C 0.139 3.861 6 C -0.574 4.574 7 H 0.082 0.918 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.733 3.267 11 H -0.203 1.203 12 H -0.209 1.209 13 H -0.197 1.197 14 C -0.036 4.036 15 C -0.145 4.145 16 C -0.283 4.283 17 C -0.050 4.050 18 C -0.169 4.169 19 C 0.293 3.707 20 O -0.335 6.335 21 N -0.293 5.293 22 C 0.018 3.982 23 N -0.249 5.249 24 C -0.079 4.079 25 C -0.260 4.260 26 S 0.025 5.975 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.262 0.738 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.130 0.870 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.361 -20.203 10.267 25.814 hybrid contribution 0.343 -0.818 -0.850 1.228 sum -12.018 -21.021 9.417 25.981 Atomic orbital electron populations 1.20035 0.88032 1.02480 1.01842 1.21947 0.96115 0.90745 1.02472 1.77286 0.87487 1.22653 1.24620 1.49257 1.05803 1.04205 1.51102 1.19663 0.77956 0.89544 0.98936 1.21300 1.13007 1.31750 0.91318 0.91804 1.24929 0.95684 0.95030 0.98168 1.69914 1.18942 1.32953 1.31162 0.86353 0.77610 0.78995 0.83728 1.20302 1.20871 1.19659 1.20785 0.96110 0.85706 1.01033 1.20359 0.93771 0.97118 1.03244 1.19287 0.91361 0.94887 1.22733 1.19411 1.01878 0.91158 0.92587 1.21814 1.03460 0.89509 1.02125 1.21579 0.76979 0.89553 0.82578 1.90815 1.45372 1.67025 1.30322 1.43401 1.66080 1.08098 1.11755 1.23803 0.94884 0.89629 0.89920 1.70112 1.20940 1.06220 1.27668 1.22764 1.03325 0.88296 0.93564 1.24973 1.06498 0.97117 0.97371 1.86741 1.84617 1.11513 1.14661 0.91558 0.91548 0.91218 0.93058 0.93069 0.92254 0.90403 0.90886 0.91082 0.91187 0.91053 0.88275 0.88366 0.73781 0.88008 0.88028 0.87032 0.87022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.26 36.01 0.37 -0.53 16 2 C 0.05 0.95 7.22 -82.40 -0.59 0.36 16 3 N -0.30 -6.70 12.58 33.67 0.42 -6.28 16 4 N -0.32 -7.43 3.60 -58.31 -0.21 -7.64 16 5 C 0.26 6.51 6.00 -5.19 -0.03 6.48 16 6 C -0.54 -14.72 9.39 -34.44 -0.32 -15.04 16 7 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 8 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -25.00 13.29 55.43 0.74 -24.26 16 10 Si 0.91 21.17 29.54 -169.99 -5.02 16.15 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 14 C 0.10 1.84 6.93 -82.26 -0.57 1.27 16 15 C -0.09 -1.38 9.72 36.01 0.35 -1.03 16 16 C -0.27 -4.65 5.35 -105.05 -0.56 -5.21 16 17 C -0.01 -0.15 4.41 -27.88 -0.12 -0.28 16 18 C -0.13 -1.32 5.68 -27.89 -0.16 -1.48 16 19 C 0.51 5.83 7.79 -10.98 -0.09 5.74 16 20 O -0.47 -7.31 14.61 5.58 0.08 -7.22 16 21 N -0.64 -5.85 5.37 -12.16 -0.07 -5.92 16 22 C 0.41 4.24 8.27 -89.31 -0.74 3.51 16 23 N -0.53 -6.30 8.89 -62.06 -0.55 -6.85 16 24 C 0.05 0.41 7.54 -4.71 -0.04 0.38 16 25 C -0.11 -0.59 7.48 37.51 0.28 -0.31 16 26 S -0.20 -1.61 23.28 -107.50 -2.50 -4.11 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.07 0.84 7.25 -51.93 -0.38 0.46 16 30 H 0.05 1.40 8.14 -51.93 -0.42 0.97 16 31 H 0.05 1.28 7.05 -51.93 -0.37 0.91 16 32 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.07 1.19 7.08 -51.93 -0.37 0.83 16 35 H 0.07 0.90 7.77 -51.92 -0.40 0.49 16 36 H 0.07 0.99 7.73 -51.93 -0.40 0.59 16 37 H 0.07 0.98 7.21 -51.93 -0.37 0.61 16 38 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.42 2.40 8.82 -40.82 -0.36 2.04 16 41 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 384.42 15.07 5.79 5.79 Total: -1.00 -34.63 384.42 -10.06 -44.69 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -6.42 Total: 0.11 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -2.32 Total: -4.46 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: 0.33 Total: -50.95 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: 0.08 Total: -7.22 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.50 Total: -4.11 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.63 -10.06 -44.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036724927.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.283 kcal (2) G-P(sol) polarization free energy of solvation -34.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds