Wall clock time and date at job start Tue Mar 31 2020 05:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30839 * 125.90099 * 2 1 4 4 N 1.40084 * 108.20323 * 180.26046 * 3 2 1 5 5 C 1.46509 * 126.03353 * 179.74227 * 4 3 2 6 6 C 1.50701 * 109.46877 * 269.97287 * 5 4 3 7 7 H 1.08001 * 120.00068 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99928 * 180.02562 * 6 5 4 9 9 N 1.31507 * 119.99784 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99966 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47315 * 89.99803 * 10 8 6 12 12 H 1.48496 * 109.47269 * 209.99911 * 10 8 6 13 13 H 1.48501 * 109.47288 * 329.99894 * 10 8 6 14 14 C 1.34943 * 107.93063 * 359.71859 * 4 3 2 15 15 C 1.50702 * 126.12908 * 179.97438 * 14 4 3 16 16 C 1.35319 * 107.74203 * 0.02562 * 14 4 3 17 17 C 1.50705 * 126.03900 * 180.02562 * 16 14 4 18 18 C 1.52993 * 109.47345 * 89.99639 * 17 16 14 19 19 C 1.50697 * 109.47107 * 180.02562 * 18 17 16 20 20 O 1.21252 * 120.00171 * 0.02562 * 19 18 17 21 21 N 1.34783 * 120.00102 * 179.97438 * 19 18 17 22 22 C 1.38224 * 119.99764 * 180.02562 * 21 19 18 23 23 N 1.28122 * 125.05771 * 0.07163 * 22 21 19 24 24 C 1.44594 * 120.01335 * 180.02562 * 23 22 21 25 25 C 1.53682 * 111.13865 * 359.89281 * 24 23 22 26 26 S 1.76762 * 125.00584 * 180.02562 * 22 21 19 27 27 H 1.09002 * 109.46877 * 270.21068 * 1 2 3 28 28 H 1.08995 * 109.46882 * 30.21365 * 1 2 3 29 29 H 1.09001 * 109.47133 * 150.21182 * 1 2 3 30 30 H 1.08997 * 109.47297 * 29.97212 * 5 4 3 31 31 H 1.09002 * 109.47113 * 149.97430 * 5 4 3 32 32 H 0.97001 * 119.99850 * 180.02562 * 9 8 6 33 33 H 1.08995 * 109.46722 * 270.01978 * 15 14 4 34 34 H 1.08998 * 109.46983 * 30.02726 * 15 14 4 35 35 H 1.09008 * 109.47034 * 150.02225 * 15 14 4 36 36 H 1.09000 * 109.46723 * 329.99503 * 17 16 14 37 37 H 1.08995 * 109.46852 * 209.99983 * 17 16 14 38 38 H 1.09000 * 109.47321 * 60.00230 * 18 17 16 39 39 H 1.08995 * 109.47426 * 299.99992 * 18 17 16 40 40 H 0.96994 * 119.99675 * 0.02562 * 21 19 18 41 41 H 1.09002 * 109.13781 * 239.47701 * 24 23 22 42 42 H 1.09001 * 109.13856 * 120.30769 * 24 23 22 43 43 H 1.08998 * 110.66241 * 118.49394 * 25 24 23 44 44 H 1.09001 * 110.66234 * 241.60821 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0060 5 6 4.7900 1.5007 -0.0134 6 6 5.1881 1.7950 -1.4368 7 1 4.6186 1.3778 -2.2541 8 6 6.2802 2.5960 -1.6956 9 7 6.9745 3.1027 -0.7003 10 14 6.7741 2.9602 -3.4599 11 1 6.0772 4.1858 -3.9262 12 1 8.2427 3.1691 -3.5297 13 1 6.3953 1.8153 -4.3264 14 6 3.6143 -0.7154 -0.0034 15 6 4.8351 -1.5990 -0.0084 16 6 2.3271 -1.1330 0.0036 17 6 1.8599 -2.5658 0.0092 18 6 1.7084 -3.0472 1.4535 19 6 1.2418 -4.4801 1.4591 20 8 1.0498 -5.0593 0.4113 21 7 1.0388 -5.1182 2.6288 22 6 0.6113 -6.4327 2.6338 23 7 0.3800 -7.1353 1.5877 24 6 -0.0655 -8.5045 1.7201 25 6 -0.1901 -8.9064 3.1982 26 16 0.3039 -7.3934 4.0853 27 1 -0.3633 0.0038 1.0277 28 1 -0.3633 0.8880 -0.5171 29 1 -0.3633 -0.8919 -0.5105 30 1 4.5589 2.4342 0.4996 31 1 5.6119 0.9991 0.4975 32 1 7.7425 3.6665 -0.8824 33 1 5.1237 -1.8138 -1.0373 34 1 5.6539 -1.0902 0.5002 35 1 4.6103 -2.5322 0.5082 36 1 2.5910 -3.1884 -0.5066 37 1 0.8988 -2.6365 -0.5000 38 1 0.9773 -2.4246 1.9693 39 1 2.6695 -2.9765 1.9627 40 1 1.1928 -4.6550 3.4670 41 1 0.6519 -9.1628 1.2300 42 1 -1.0368 -8.6125 1.2373 43 1 -1.2190 -9.1740 3.4386 44 1 0.4868 -9.7282 3.4317 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036724927.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:29 Heat of formation + Delta-G solvation = 29.686593 kcal Electronic energy + Delta-G solvation = -25750.219445 eV Core-core repulsion = 22022.379979 eV Total energy + Delta-G solvation = -3727.839467 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.15685 -41.24415 -38.56837 -36.11490 -35.82924 -34.86998 -34.18224 -31.94034 -30.95915 -30.43888 -28.28158 -27.60600 -26.23440 -25.11480 -24.09884 -22.83083 -20.53997 -20.30047 -20.13446 -19.73421 -18.81491 -17.80105 -17.24440 -17.06469 -16.89057 -16.40271 -16.24689 -15.99184 -15.25594 -14.99039 -14.74805 -14.63164 -14.39994 -14.24049 -14.10524 -13.95502 -13.70068 -13.49118 -13.33374 -13.23512 -13.18241 -12.85816 -12.76403 -12.75651 -12.63563 -12.57127 -12.22511 -12.02191 -11.86163 -11.70416 -11.29132 -11.11101 -10.75471 -10.34938 -10.12643 -9.82494 -9.02068 -8.94696 -8.34973 -6.52391 0.04196 0.65246 0.91923 1.18909 1.35281 1.36666 1.47662 1.80455 1.82702 1.95959 2.05837 2.32940 2.94525 3.28394 3.53272 3.86783 3.90316 3.95332 3.98665 4.22164 4.27290 4.36005 4.51981 4.58551 4.62794 4.65927 4.70342 4.71587 4.74217 4.85282 4.89233 4.91352 4.96514 5.06030 5.16122 5.21648 5.35037 5.44704 5.50763 5.57533 5.80668 5.88216 6.07033 6.32690 6.62785 6.69487 7.10248 7.13440 7.18873 8.70930 Molecular weight = 336.14amu Principal moments of inertia in cm(-1) A = 0.023572 B = 0.002040 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.547756 B =13721.538833 C =14032.940332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.055 3.945 3 N -0.351 5.351 4 N -0.355 5.355 5 C 0.275 3.725 6 C -0.552 4.552 7 H 0.046 0.954 8 C 0.022 3.978 9 N -0.917 5.917 10 Si 0.970 3.030 11 H -0.275 1.275 12 H -0.269 1.269 13 H -0.270 1.270 14 C 0.080 3.920 15 C -0.084 4.084 16 C -0.257 4.257 17 C -0.005 4.005 18 C -0.119 4.119 19 C 0.516 3.484 20 O -0.515 6.515 21 N -0.630 5.630 22 C 0.392 3.608 23 N -0.569 5.569 24 C 0.048 3.952 25 C -0.099 4.099 26 S -0.199 6.199 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.019 0.981 31 H 0.048 0.952 32 H 0.273 0.727 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.108 0.892 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.121 0.879 39 H 0.115 0.885 40 H 0.440 0.560 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.133 0.867 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.681 -23.739 11.416 29.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.109 4.109 3 N -0.174 5.174 4 N -0.135 5.135 5 C 0.156 3.844 6 C -0.590 4.590 7 H 0.065 0.935 8 C -0.179 4.179 9 N -0.556 5.556 10 Si 0.794 3.206 11 H -0.200 1.200 12 H -0.194 1.194 13 H -0.195 1.195 14 C -0.050 4.050 15 C -0.142 4.142 16 C -0.268 4.268 17 C -0.044 4.044 18 C -0.159 4.159 19 C 0.302 3.698 20 O -0.385 6.385 21 N -0.284 5.284 22 C 0.005 3.995 23 N -0.294 5.294 24 C -0.084 4.084 25 C -0.249 4.249 26 S 0.026 5.974 27 H 0.112 0.888 28 H 0.082 0.918 29 H 0.110 0.890 30 H 0.037 0.963 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.126 0.874 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.139 0.861 39 H 0.133 0.867 40 H 0.281 0.719 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.151 0.849 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.383 -22.347 10.945 28.254 hybrid contribution 0.542 -0.277 -0.988 1.160 sum -12.841 -22.624 9.957 27.855 Atomic orbital electron populations 1.20222 0.84697 1.03410 1.03883 1.22782 0.98106 0.90185 0.99858 1.77222 0.87791 1.25052 1.27356 1.48999 1.05336 1.05178 1.54008 1.19126 0.79083 0.88777 0.97446 1.21428 1.13360 1.32375 0.91875 0.93534 1.25736 0.95436 0.94534 1.02244 1.69995 1.19296 1.33212 1.33067 0.85375 0.77867 0.78637 0.78738 1.20036 1.19381 1.19503 1.21462 0.98201 0.84669 1.00693 1.20452 0.92307 0.97979 1.03433 1.19639 0.90266 0.96337 1.20586 1.19375 1.01550 0.88538 0.94979 1.21696 1.05081 0.89069 1.00035 1.21632 0.76055 0.89660 0.82452 1.90805 1.47621 1.68061 1.32016 1.43242 1.65227 1.08012 1.11909 1.24031 0.94751 0.89898 0.90861 1.70093 1.21582 1.08258 1.29509 1.22831 1.03756 0.86734 0.95104 1.25107 1.08332 0.96215 0.95281 1.86721 1.84489 1.12446 1.13744 0.88846 0.91837 0.89038 0.96264 0.93434 0.91741 0.90728 0.91817 0.87356 0.91713 0.90921 0.86121 0.86659 0.71917 0.87415 0.87314 0.84926 0.85021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.62 10.26 71.24 0.73 -0.89 16 2 C 0.06 2.01 7.22 43.10 0.31 2.32 16 3 N -0.35 -16.20 12.58 -47.38 -0.60 -16.80 16 4 N -0.36 -16.82 3.60 -338.38 -1.22 -18.04 16 5 C 0.28 14.64 6.00 85.63 0.51 15.16 16 6 C -0.55 -31.42 9.39 25.60 0.24 -31.18 16 7 H 0.05 2.75 7.81 -2.91 -0.02 2.72 16 8 C 0.02 1.19 5.46 84.66 0.46 1.65 16 9 N -0.92 -52.33 13.29 21.45 0.28 -52.05 16 10 Si 0.97 43.73 29.54 68.60 2.03 45.76 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 13 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 14 C 0.08 3.07 6.93 41.41 0.29 3.36 16 15 C -0.08 -2.63 9.72 71.24 0.69 -1.94 16 16 C -0.26 -8.53 5.35 -20.14 -0.11 -8.64 16 17 C -0.01 -0.13 4.41 29.85 0.13 0.00 16 18 C -0.12 -2.11 5.68 29.84 0.17 -1.94 16 19 C 0.52 10.87 7.79 87.66 0.68 11.55 16 20 O -0.51 -15.56 14.61 -2.94 -0.04 -15.60 16 21 N -0.63 -10.31 5.37 -310.79 -1.67 -11.98 16 22 C 0.39 7.61 8.27 179.89 1.49 9.10 16 23 N -0.57 -13.03 8.89 -350.21 -3.11 -16.14 16 24 C 0.05 0.66 7.54 86.96 0.66 1.31 16 25 C -0.10 -0.81 7.48 72.21 0.54 -0.27 16 26 S -0.20 -2.77 23.28 -56.49 -1.32 -4.08 16 27 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.09 1.94 7.25 -2.39 -0.02 1.92 16 30 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.05 2.50 7.05 -2.39 -0.02 2.49 16 32 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 33 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.06 2.11 7.08 -2.39 -0.02 2.09 16 35 H 0.11 2.52 7.77 -2.38 -0.02 2.50 16 36 H 0.06 1.73 7.73 -2.39 -0.02 1.71 16 37 H 0.07 1.85 7.21 -2.39 -0.02 1.83 16 38 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.44 3.94 8.82 -92.71 -0.82 3.12 16 41 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.11 1.26 8.14 -2.39 -0.02 1.25 16 43 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -78.19 384.42 1.36 -76.82 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.21 Total: 12.51 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 6.80 Total: -0.41 kcal Atomic # 7 Polarization: -108.69 SS G_CDS: -6.31 Total: -115.00 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.04 Total: -15.60 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -2.77 SS G_CDS: -1.32 Total: -4.08 kcal Total: -78.19 1.36 -76.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036724927.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.511 kcal (2) G-P(sol) polarization free energy of solvation -78.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds