Wall clock time and date at job start Tue Mar 31 2020 05:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50696 * 120.00308 * 2 1 4 4 N 1.46495 * 109.47378 * 124.99886 * 3 2 1 5 5 C 1.34346 * 125.20442 * 89.97419 * 4 3 2 6 6 O 1.21628 * 125.02884 * 0.02723 * 5 4 3 7 7 N 1.34619 * 109.93867 * 180.02562 * 5 4 3 8 8 C 1.40144 * 107.50319 * 0.02562 * 7 5 4 9 9 C 1.36245 * 127.02844 * 180.02562 * 8 7 5 10 10 C 1.46135 * 119.99855 * 172.59982 * 9 8 7 11 11 C 1.37791 * 126.83259 * 319.16570 * 10 9 8 12 12 N 1.35876 * 109.47794 * 180.02562 * 11 10 9 13 13 C 1.36943 * 124.77377 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00060 * 156.58883 * 13 12 11 15 15 C 1.38972 * 120.00064 * 336.58956 * 13 12 11 16 16 N 1.31346 * 119.99801 * 349.10955 * 15 13 12 17 17 Si 1.86799 * 120.00099 * 169.11324 * 15 13 12 18 18 H 1.48497 * 109.47069 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47300 * 120.00116 * 17 15 13 20 20 H 1.48500 * 109.46962 * 240.00015 * 17 15 13 21 21 C 1.38413 * 110.45228 * 359.97438 * 12 11 10 22 22 C 1.39011 * 132.95231 * 180.02562 * 21 12 11 23 23 C 1.37927 * 119.95863 * 180.02562 * 22 21 12 24 24 C 1.38642 * 120.59758 * 359.96002 * 23 22 21 25 25 C 1.37934 * 120.26013 * 0.02562 * 24 23 22 26 26 C 1.39119 * 119.69139 * 0.02562 * 25 24 23 27 27 C 1.34733 * 125.20897 * 270.32948 * 4 3 2 28 28 O 1.21783 * 126.48258 * 0.02562 * 27 4 3 29 29 H 1.08006 * 120.00284 * 180.02562 * 1 2 3 30 30 H 1.08002 * 120.00093 * 0.02562 * 1 2 3 31 31 H 1.08004 * 120.00293 * 180.02562 * 2 1 3 32 32 H 1.09006 * 109.46863 * 4.99915 * 3 2 1 33 33 H 1.09002 * 109.47160 * 245.00430 * 3 2 1 34 34 H 0.96999 * 126.25111 * 180.02562 * 7 5 4 35 35 H 1.08006 * 120.00016 * 352.60339 * 9 8 7 36 36 H 1.08001 * 125.26141 * 359.75066 * 11 10 9 37 37 H 0.97004 * 120.00110 * 180.02562 * 16 15 13 38 38 H 1.08004 * 120.02217 * 0.02562 * 22 21 12 39 39 H 1.08005 * 119.70307 * 179.97438 * 23 22 21 40 40 H 1.08006 * 119.86738 * 180.02562 * 24 23 22 41 41 H 1.08008 * 120.15597 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3318 1.1314 5 6 4.2641 0.8959 1.1000 6 8 4.8148 0.4195 0.1259 7 7 4.8372 1.0645 2.3064 8 6 3.8784 1.6388 3.1520 9 6 4.0374 1.9777 4.4620 10 6 2.9865 2.7169 5.1582 11 6 2.2398 3.7608 4.6567 12 7 1.3636 4.1871 5.6037 13 6 0.4703 5.2115 5.4367 14 1 -0.4202 5.2562 6.0461 15 6 0.7097 6.1936 4.4830 16 7 1.8812 6.2648 3.8934 17 14 -0.6347 7.4124 4.0396 18 1 -1.8514 7.1199 4.8393 19 1 -0.1689 8.7916 4.3327 20 1 -0.9529 7.2941 2.5940 21 6 1.5010 3.4402 6.7609 22 6 0.8567 3.4742 7.9923 23 6 1.2155 2.5833 8.9822 24 6 2.2157 1.6488 8.7619 25 6 2.8658 1.5999 7.5463 26 6 2.5138 2.4939 6.5402 27 6 2.7041 1.7912 2.3644 28 8 1.6389 2.2513 2.7340 29 1 -0.5401 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3585 2.1316 0.0896 33 1 2.6212 1.4025 -0.9314 34 1 5.7475 0.8311 2.5467 35 1 4.9402 1.7002 4.9859 36 1 2.3390 4.1787 3.6658 37 1 2.0484 6.9506 3.2280 38 1 0.0758 4.1979 8.1738 39 1 0.7125 2.6136 9.9375 40 1 2.4869 0.9564 9.5452 41 1 3.6445 0.8710 7.3764 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039556769.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:23 Heat of formation + Delta-G solvation = 65.515855 kcal Electronic energy + Delta-G solvation = -28613.199383 eV Core-core repulsion = 24653.750976 eV Total energy + Delta-G solvation = -3959.448407 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.121 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.26389 -40.26794 -37.98862 -36.35669 -36.15932 -35.56216 -33.73441 -32.88472 -31.88047 -29.87370 -28.79498 -27.45553 -27.14027 -25.15090 -23.51324 -21.99957 -21.70354 -20.86965 -20.67163 -19.77036 -18.63729 -17.87677 -17.59492 -16.45905 -16.03759 -15.75849 -15.59157 -15.18770 -14.83801 -14.75906 -14.51769 -14.48185 -13.68836 -13.56913 -13.51632 -13.39648 -13.16359 -12.97757 -12.41108 -12.11646 -11.98656 -11.61498 -11.51429 -11.43701 -11.23625 -11.16409 -10.78933 -10.74018 -10.57662 -10.49140 -10.08290 -9.88193 -9.50179 -9.40368 -9.30240 -8.87505 -8.00410 -7.35604 -6.98450 -6.47647 -4.50004 1.07369 2.02937 2.05114 2.48871 2.84679 2.90145 2.96476 3.01797 3.13511 3.49652 3.67036 3.69021 3.97509 4.58099 4.60174 4.79883 4.87802 4.91025 5.11681 5.33379 5.54980 5.62594 5.65151 5.68482 5.79171 5.84717 5.95670 6.01632 6.10630 6.23237 6.35966 6.43740 6.55369 6.68117 6.72698 6.77936 6.87082 6.95084 6.99165 7.06960 7.26981 7.35807 7.41388 7.52674 7.76052 7.86567 8.13447 8.27525 8.46974 8.74574 9.15676 10.09570 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.008998 B = 0.004764 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.033368 B = 5876.240356 C = 7658.704880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.177 4.177 3 C 0.153 3.847 4 N -0.577 5.577 5 C 0.698 3.302 6 O -0.559 6.559 7 N -0.659 5.659 8 C -0.087 4.087 9 C 0.095 3.905 10 C -0.280 4.280 11 C 0.180 3.820 12 N -0.270 5.270 13 C -0.342 4.342 14 H 0.111 0.889 15 C 0.046 3.954 16 N -0.842 5.842 17 Si 0.942 3.058 18 H -0.262 1.262 19 H -0.273 1.273 20 H -0.271 1.271 21 C 0.048 3.952 22 C -0.098 4.098 23 C -0.143 4.143 24 C -0.151 4.151 25 C -0.098 4.098 26 C -0.068 4.068 27 C 0.552 3.448 28 O -0.461 6.461 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.429 0.571 35 H 0.126 0.874 36 H 0.178 0.822 37 H 0.283 0.717 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.282 -6.337 -1.371 6.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.196 4.196 3 C 0.032 3.968 4 N -0.324 5.324 5 C 0.400 3.600 6 O -0.436 6.436 7 N -0.311 5.311 8 C -0.184 4.184 9 C 0.070 3.930 10 C -0.287 4.287 11 C 0.035 3.965 12 N 0.071 4.929 13 C -0.469 4.469 14 H 0.128 0.872 15 C -0.164 4.164 16 N -0.473 5.473 17 Si 0.766 3.234 18 H -0.186 1.186 19 H -0.199 1.199 20 H -0.196 1.196 21 C -0.058 4.058 22 C -0.117 4.117 23 C -0.163 4.163 24 C -0.171 4.171 25 C -0.117 4.117 26 C -0.072 4.072 27 C 0.346 3.654 28 O -0.333 6.333 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.129 0.871 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.270 0.730 35 H 0.143 0.857 36 H 0.195 0.805 37 H 0.094 0.906 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.126 0.874 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.727 -5.899 -1.968 6.261 hybrid contribution 0.018 0.452 -0.161 0.480 sum 0.746 -5.446 -2.129 5.895 Atomic orbital electron populations 1.23911 0.95651 1.02290 0.98426 1.23156 0.96267 0.98479 1.01649 1.20585 0.91414 0.96773 0.87980 1.46462 1.12846 1.59369 1.13746 1.15939 0.81324 0.79118 0.83602 1.90977 1.67507 1.50308 1.34785 1.43008 1.14811 1.63434 1.09880 1.18906 0.90180 1.14364 0.94958 1.20696 0.95546 0.87801 0.88936 1.18453 1.08703 1.07112 0.94385 1.22658 0.88447 0.91935 0.93491 1.40059 1.24373 1.21603 1.06889 1.19946 1.02391 1.02288 1.22304 0.87154 1.25546 0.97311 0.97822 0.95720 1.69813 1.20290 1.33348 1.23857 0.85626 0.79777 0.78847 0.79195 1.18588 1.19879 1.19626 1.18480 1.00555 0.97531 0.89260 1.20006 1.00455 1.00083 0.91188 1.20486 1.00014 0.97571 0.98200 1.20622 0.99001 1.00536 0.96907 1.20198 1.00221 0.98732 0.92536 1.18806 0.97810 0.97443 0.93179 1.17105 0.88936 0.78237 0.81121 1.90989 1.26708 1.41632 1.73937 0.88150 0.88011 0.87102 0.88457 0.88404 0.72953 0.85668 0.80518 0.90588 0.87137 0.87183 0.87405 0.87418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 14.32 29.02 0.42 -1.55 16 2 C -0.18 -2.34 9.85 -36.03 -0.35 -2.69 16 3 C 0.15 2.20 6.25 -5.20 -0.03 2.17 16 4 N -0.58 -9.78 2.63 -125.19 -0.33 -10.10 16 5 C 0.70 11.75 8.78 -87.45 -0.77 10.99 16 6 O -0.56 -10.37 17.69 5.25 0.09 -10.28 16 7 N -0.66 -9.67 6.24 -14.09 -0.09 -9.75 16 8 C -0.09 -1.50 6.86 -83.25 -0.57 -2.07 16 9 C 0.09 1.63 10.23 -37.13 -0.38 1.25 16 10 C -0.28 -6.03 5.61 -103.01 -0.58 -6.61 16 11 C 0.18 4.37 7.27 -15.92 -0.12 4.25 16 12 N -0.27 -6.75 2.88 -59.15 -0.17 -6.92 16 13 C -0.34 -8.50 9.86 -15.00 -0.15 -8.65 16 14 H 0.11 2.60 7.85 -52.49 -0.41 2.19 16 15 C 0.05 1.10 5.34 -17.49 -0.09 1.01 16 16 N -0.84 -20.86 10.94 55.50 0.61 -20.25 16 17 Si 0.94 18.36 29.57 -169.99 -5.03 13.33 16 18 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 19 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 20 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 21 C 0.05 1.10 6.72 -83.81 -0.56 0.54 16 22 C -0.10 -1.97 9.92 -39.41 -0.39 -2.36 16 23 C -0.14 -2.49 10.02 -39.55 -0.40 -2.89 16 24 C -0.15 -2.55 10.04 -39.54 -0.40 -2.95 16 25 C -0.10 -1.79 10.09 -39.37 -0.40 -2.19 16 26 C -0.07 -1.46 6.35 -104.88 -0.67 -2.13 16 27 C 0.55 10.62 7.51 -14.75 -0.11 10.51 16 28 O -0.46 -10.32 13.91 5.11 0.07 -10.25 16 29 H 0.10 1.02 8.06 -52.48 -0.42 0.60 16 30 H 0.10 1.19 7.84 -52.49 -0.41 0.78 16 31 H 0.11 1.46 8.06 -52.48 -0.42 1.03 16 32 H 0.10 1.37 7.70 -51.93 -0.40 0.97 16 33 H 0.10 1.27 7.99 -51.93 -0.41 0.85 16 34 H 0.43 4.84 8.96 -40.82 -0.37 4.47 16 35 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16 36 H 0.18 4.54 5.54 -52.49 -0.29 4.25 16 37 H 0.28 6.49 8.31 -40.82 -0.34 6.15 16 38 H 0.11 2.10 8.06 -52.48 -0.42 1.67 16 39 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 40 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 41 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 LS Contribution 360.78 15.07 5.44 5.44 Total: -1.00 -29.44 360.78 -9.34 -38.78 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -4.39 Total: 13.40 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -5.55 Total: -3.39 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: 0.02 Total: -47.03 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: 0.16 Total: -20.53 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.33 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.44 -9.34 -38.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039556769.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.296 kcal (2) G-P(sol) polarization free energy of solvation -29.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds