Wall clock time and date at job start Tue Mar 31 2020 05:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86807 * 119.99983 * 2 1 4 4 H 1.48497 * 109.47138 * 274.68482 * 3 2 1 5 5 H 1.48509 * 109.46785 * 34.68381 * 3 2 1 6 6 H 1.48492 * 109.47117 * 154.68023 * 3 2 1 7 7 C 1.39898 * 120.00238 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00463 * 197.48763 * 7 2 1 9 9 C 1.41137 * 120.00192 * 17.48327 * 7 2 1 10 10 C 1.40878 * 120.15737 * 25.16976 * 9 7 2 11 11 C 1.36354 * 119.83423 * 180.23229 * 10 9 7 12 12 C 1.39532 * 120.16169 * 359.52102 * 11 10 9 13 13 N 1.39083 * 119.83769 * 180.25697 * 12 11 10 14 14 C 1.34776 * 119.99999 * 33.30030 * 13 12 11 15 15 O 1.21707 * 119.99653 * 5.20111 * 14 13 12 16 16 C 1.46588 * 119.99908 * 185.19845 * 14 13 12 17 17 C 1.36594 * 125.98958 * 180.02562 * 16 14 13 18 18 C 1.40354 * 106.70632 * 179.97438 * 17 16 14 19 19 C 1.35148 * 107.11631 * 0.02562 * 18 17 16 20 20 S 1.76201 * 125.61200 * 180.02562 * 19 18 17 21 21 N 1.65598 * 107.22150 * 89.99398 * 20 19 18 22 22 O 1.42098 * 106.40224 * 203.53874 * 20 19 18 23 23 O 1.42105 * 106.40121 * 336.45082 * 20 19 18 24 24 O 1.33941 * 108.77591 * 359.76705 * 19 18 17 25 25 C 1.39528 * 120.32113 * 0.23108 * 12 11 10 26 26 C 1.36351 * 120.16827 * 0.02562 * 25 12 11 27 27 H 0.96997 * 119.99670 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.08608 * 0.02562 * 10 9 7 29 29 H 1.07999 * 119.92085 * 179.79852 * 11 10 9 30 30 H 0.96997 * 119.99599 * 213.30629 * 13 12 11 31 31 H 1.07994 * 126.64935 * 359.93021 * 17 16 14 32 32 H 1.07990 * 126.43998 * 180.02562 * 18 17 16 33 33 H 0.97005 * 119.99653 * 150.00398 * 21 20 19 34 34 H 0.96995 * 119.99842 * 330.00187 * 21 20 19 35 35 H 1.08002 * 119.91320 * 180.02562 * 25 12 11 36 36 H 1.08004 * 120.07881 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.3913 2.1036 -1.3954 5 1 1.4932 2.6221 0.7968 6 1 3.5863 1.4137 0.5987 7 6 2.0083 -1.2115 -0.0005 8 1 3.0509 -1.2333 0.2805 9 6 1.3516 -2.4055 -0.3683 10 6 0.2244 -2.3622 -1.2121 11 6 -0.4079 -3.5193 -1.5594 12 6 0.0650 -4.7449 -1.0892 13 7 -0.5819 -5.9215 -1.4520 14 6 -1.1568 -6.0275 -2.6663 15 8 -1.0294 -5.1317 -3.4802 16 6 -1.9356 -7.2218 -3.0067 17 6 -2.5671 -7.4566 -4.1950 18 6 -3.1845 -8.7120 -4.0827 19 6 -2.9070 -9.1826 -2.8465 20 16 -3.4456 -10.7273 -2.1919 21 7 -2.2872 -11.8495 -2.5672 22 8 -3.4293 -10.5912 -0.7775 23 8 -4.6081 -11.0900 -2.9243 24 8 -2.1504 -8.2840 -2.2030 25 6 1.1840 -4.7959 -0.2573 26 6 1.8233 -3.6466 0.1025 27 1 -0.4849 0.8400 0.0004 28 1 -0.1402 -1.4146 -1.5804 29 1 -1.2741 -3.4874 -2.2036 30 1 -0.6192 -6.6657 -0.8310 31 1 -2.5880 -6.8026 -5.0541 32 1 -3.7709 -9.2086 -4.8414 33 1 -2.1405 -12.6093 -1.9822 34 1 -1.7555 -11.7472 -3.3719 35 1 1.5447 -5.7483 0.1025 36 1 2.6896 -3.6878 0.7462 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040105440.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:41 Heat of formation + Delta-G solvation = -64.508119 kcal Electronic energy + Delta-G solvation = -25143.604023 eV Core-core repulsion = 21107.721026 eV Total energy + Delta-G solvation = -4035.882996 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 336.066 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.07398 -39.70735 -37.67079 -37.36911 -36.35994 -34.78626 -33.73578 -33.60620 -33.07936 -30.78853 -29.60481 -29.01104 -25.61984 -23.82724 -22.51238 -21.58784 -21.08093 -20.14661 -19.94853 -19.15970 -18.03377 -17.94151 -17.42267 -16.79310 -16.64486 -16.49663 -15.80935 -15.37327 -14.67288 -14.51216 -14.13704 -14.03406 -13.65653 -13.43012 -13.16014 -12.74433 -12.72075 -12.60225 -12.49496 -12.17267 -12.04352 -11.94831 -11.53241 -11.23272 -11.19353 -11.04395 -10.78828 -10.59303 -10.24662 -9.84992 -9.71926 -9.48233 -9.24669 -9.09097 -7.64852 -7.13921 -6.84978 -4.40600 -0.26823 0.34463 1.63962 2.21685 2.54404 2.71579 2.96654 3.01528 3.05120 3.06476 3.13205 3.35350 3.43236 3.85823 4.24171 4.36350 4.52423 4.65817 4.97114 5.19969 5.29650 5.47301 5.59768 5.78915 6.04137 6.18438 6.26813 6.51639 6.57361 6.82023 6.92119 7.02740 7.14284 7.45415 7.51891 7.75456 7.94545 8.00246 8.16638 8.39139 8.52664 8.76957 8.86545 10.06963 Molecular weight = 336.07amu Principal moments of inertia in cm(-1) A = 0.032364 B = 0.002179 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.947139 B =12846.807572 C =13221.686931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.452 4.452 8 H 0.081 0.919 9 C 0.109 3.891 10 C -0.156 4.156 11 C -0.081 4.081 12 C -0.023 4.023 13 N -0.623 5.623 14 C 0.570 3.430 15 O -0.499 6.499 16 C 0.007 3.993 17 C -0.159 4.159 18 C -0.087 4.087 19 C -0.575 4.575 20 S 2.738 3.262 21 N -1.244 6.244 22 O -0.942 6.942 23 O -0.937 6.937 24 O -0.107 6.107 25 C -0.094 4.094 26 C -0.215 4.215 27 H 0.283 0.717 28 H 0.121 0.879 29 H 0.103 0.897 30 H 0.402 0.598 31 H 0.174 0.826 32 H 0.176 0.824 33 H 0.425 0.575 34 H 0.419 0.581 35 H 0.093 0.907 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.518 -19.197 -6.288 20.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.481 4.481 8 H 0.099 0.901 9 C 0.106 3.894 10 C -0.176 4.176 11 C -0.101 4.101 12 C -0.115 4.115 13 N -0.265 5.265 14 C 0.355 3.645 15 O -0.376 6.376 16 C -0.051 4.051 17 C -0.180 4.180 18 C -0.108 4.108 19 C -0.707 4.707 20 S 2.818 3.182 21 N -0.920 5.920 22 O -0.932 6.932 23 O -0.927 6.927 24 O 0.000 6.000 25 C -0.114 4.114 26 C -0.235 4.235 27 H 0.094 0.906 28 H 0.139 0.861 29 H 0.121 0.879 30 H 0.236 0.764 31 H 0.191 0.809 32 H 0.193 0.807 33 H 0.257 0.743 34 H 0.247 0.753 35 H 0.111 0.889 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.434 -18.381 -6.009 20.087 hybrid contribution 0.901 0.579 -0.397 1.142 sum -4.533 -17.802 -6.405 19.455 Atomic orbital electron populations 1.69843 1.07660 1.29555 1.33899 1.25981 0.94786 1.01582 0.92198 0.86246 0.80551 0.80374 0.79281 1.19209 1.20187 1.18468 1.19623 0.98108 0.91215 1.39163 0.90108 1.17706 0.91236 0.92153 0.88282 1.20970 0.99262 0.96733 1.00651 1.20414 0.99059 0.91227 0.99440 1.17115 0.99481 0.83946 1.10914 1.42882 1.52491 1.16767 1.14314 1.16538 0.81018 0.83773 0.83179 1.90924 1.60278 1.37738 1.48658 1.23343 1.01180 0.89342 0.91187 1.22175 0.99465 0.97540 0.98791 1.22004 0.97851 0.95529 0.95438 1.35644 1.13637 1.16467 1.04933 1.01082 0.72707 0.71225 0.73147 1.53056 1.59290 1.41573 1.38066 1.93637 1.85810 1.85218 1.28510 1.93688 1.44013 1.80620 1.74343 1.84222 1.52943 1.23513 1.39303 1.20034 0.94233 0.97402 0.99703 1.20551 1.03728 0.92453 1.06804 0.90604 0.86077 0.87949 0.76365 0.80871 0.80698 0.74329 0.75306 0.88888 0.88328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.89 10.97 55.55 0.61 -19.28 16 2 C 0.07 1.80 5.14 -17.34 -0.09 1.71 16 3 Si 0.91 18.19 29.59 -169.99 -5.03 13.16 16 4 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.45 -11.64 9.03 -37.86 -0.34 -11.98 16 8 H 0.08 1.98 7.90 -52.49 -0.41 1.57 16 9 C 0.11 2.84 5.57 -106.80 -0.59 2.25 16 10 C -0.16 -4.08 8.63 -39.26 -0.34 -4.42 16 11 C -0.08 -1.98 8.57 -39.78 -0.34 -2.32 16 12 C -0.02 -0.49 6.29 -83.61 -0.53 -1.02 16 13 N -0.62 -11.25 5.30 -10.95 -0.06 -11.31 16 14 C 0.57 10.22 7.51 -12.89 -0.10 10.12 16 15 O -0.50 -10.50 14.50 5.18 0.08 -10.43 16 16 C 0.01 0.10 7.13 -36.81 -0.26 -0.16 16 17 C -0.16 -1.90 10.62 -39.38 -0.42 -2.32 16 18 C -0.09 -0.83 10.59 -39.89 -0.42 -1.25 16 19 C -0.58 -5.93 7.35 29.63 0.22 -5.71 16 20 S 2.74 22.55 6.43 -107.50 -0.69 21.86 16 21 N -1.24 -4.89 9.52 60.35 0.57 -4.32 16 22 O -0.94 -11.35 18.02 -57.25 -1.03 -12.38 16 23 O -0.94 -9.70 17.83 -57.17 -1.02 -10.72 16 24 O -0.11 -1.38 10.41 4.95 0.05 -1.33 16 25 C -0.09 -2.01 9.89 -39.78 -0.39 -2.40 16 26 C -0.22 -5.07 9.74 -39.26 -0.38 -5.45 16 27 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 28 H 0.12 3.27 6.19 -52.49 -0.32 2.94 16 29 H 0.10 2.47 6.38 -52.49 -0.33 2.14 16 30 H 0.40 5.99 8.57 -40.82 -0.35 5.64 16 31 H 0.17 1.85 8.06 -52.49 -0.42 1.42 16 32 H 0.18 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.43 0.94 8.96 -34.47 -0.31 0.63 16 34 H 0.42 0.75 8.96 -34.46 -0.31 0.44 16 35 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.10 2.15 8.06 -52.48 -0.42 1.72 16 LS Contribution 337.46 15.07 5.09 5.09 Total: -1.00 -34.37 337.46 -8.29 -42.67 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -2.87 Total: 9.95 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -3.99 Total: -22.96 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 1.13 Total: -34.91 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -1.92 Total: -34.86 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.16 kcal Atomic # 16 Polarization: 22.55 SS G_CDS: -0.69 Total: 21.86 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.37 -8.29 -42.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040105440.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.843 kcal (2) G-P(sol) polarization free energy of solvation -34.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds