Wall clock time and date at job start Tue Mar 31 2020 05:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.47132 * 2 1 4 4 C 1.36562 * 127.17041 * 273.76853 * 3 2 1 5 5 S 1.76203 * 126.38422 * 0.02562 * 4 3 2 6 6 C 1.80993 * 100.00093 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.47168 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.46849 * 179.97438 * 7 6 5 9 9 H 1.07994 * 120.00457 * 0.02562 * 8 7 6 10 10 C 1.37883 * 119.99493 * 180.02562 * 8 7 6 11 11 N 1.31519 * 119.99686 * 180.02562 * 10 8 7 12 12 Si 1.86790 * 120.00247 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.47401 * 89.99861 * 12 10 8 14 14 H 1.48500 * 109.47268 * 210.00391 * 12 10 8 15 15 H 1.48502 * 109.47216 * 329.99956 * 12 10 8 16 16 N 1.31442 * 107.23714 * 179.97438 * 4 3 2 17 17 N 1.28518 * 110.07671 * 0.02562 * 16 4 3 18 18 C 1.31264 * 109.95675 * 359.97438 * 17 16 4 19 19 C 1.47848 * 126.46163 * 179.73864 * 18 17 16 20 20 C 1.39599 * 120.13555 * 161.04549 * 19 18 17 21 21 C 1.37946 * 119.87575 * 179.97438 * 20 19 18 22 22 C 1.38358 * 120.16107 * 359.97438 * 21 20 19 23 23 C 1.38451 * 120.27824 * 359.97438 * 22 21 20 24 24 Cl 1.73601 * 119.94166 * 180.02562 * 23 22 21 25 25 C 1.38103 * 120.12111 * 359.78292 * 23 22 21 26 26 H 1.08999 * 109.47121 * 300.00101 * 1 2 3 27 27 H 1.09000 * 109.46776 * 60.00380 * 1 2 3 28 28 H 1.09005 * 109.47269 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46924 * 239.99394 * 2 1 3 30 30 H 1.09005 * 109.46522 * 120.00021 * 2 1 3 31 31 H 1.09003 * 109.47033 * 299.99594 * 6 5 4 32 32 H 1.09002 * 109.47686 * 59.99834 * 6 5 4 33 33 H 1.08995 * 109.47135 * 300.00136 * 7 6 5 34 34 H 1.08998 * 109.46880 * 59.99990 * 7 6 5 35 35 H 0.97000 * 119.99575 * 180.02562 * 11 10 8 36 36 H 1.07999 * 120.06600 * 359.95185 * 20 19 18 37 37 H 1.08002 * 119.91588 * 180.02562 * 21 20 19 38 38 H 1.08002 * 119.86202 * 180.02562 * 22 21 20 39 39 H 1.07990 * 120.08338 * 180.23120 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2260 2.1830 -1.0858 5 16 1.9544 1.7499 -2.7721 6 6 2.4442 3.2955 -3.5764 7 6 2.2882 3.1536 -5.0918 8 6 2.6955 4.4408 -5.7614 9 1 3.0323 5.2763 -5.1658 10 6 2.6381 4.5517 -7.1346 11 7 2.9939 5.6749 -7.7190 12 14 2.0548 3.1069 -8.1647 13 1 0.5831 3.1895 -8.3451 14 1 2.7192 3.1453 -9.4923 15 1 2.3986 1.8370 -7.4759 16 7 2.6651 3.3383 -0.6386 17 7 2.7460 3.3131 0.6437 18 6 2.3632 2.1410 1.0939 19 6 2.3176 1.7154 2.5090 20 6 1.5394 0.6197 2.8866 21 6 1.5012 0.2269 4.2084 22 6 2.2324 0.9158 5.1597 23 6 3.0073 2.0027 4.7923 24 17 3.9219 2.8603 5.9931 25 6 3.0580 2.4029 3.4715 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.8102 4.1074 -3.2200 32 1 3.4848 3.5156 -3.3377 33 1 2.9225 2.3419 -5.4479 34 1 1.2478 2.9334 -5.3309 35 1 2.9532 5.7530 -8.6850 36 1 0.9679 0.0808 2.1454 37 1 0.8996 -0.6209 4.5012 38 1 2.1993 0.6038 6.1932 39 1 3.6655 3.2485 3.1850 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040456790.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:40 Heat of formation + Delta-G solvation = 89.173270 kcal Electronic energy + Delta-G solvation = -22977.364371 eV Core-core repulsion = 19459.261848 eV Total energy + Delta-G solvation = -3518.102523 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 337.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.90429 -39.62978 -36.92289 -36.07948 -33.81049 -32.84526 -31.35276 -31.29997 -30.87343 -29.51714 -25.72367 -24.81640 -23.92366 -23.33076 -22.12726 -21.27642 -20.58389 -18.18027 -17.30322 -17.02928 -16.66901 -16.46220 -16.16122 -15.41785 -14.82121 -14.56389 -14.44204 -14.09830 -13.99879 -13.95061 -13.54337 -13.42574 -12.84341 -12.74441 -12.27538 -12.14411 -11.93666 -11.90834 -11.73601 -11.51644 -11.32893 -11.30458 -10.84229 -10.61142 -10.40518 -10.31473 -10.28272 -10.16296 -9.74756 -9.32509 -9.31157 -9.04152 -8.63282 -7.45190 -6.12517 -4.13337 0.29927 0.68934 1.19742 1.65961 1.73028 2.34596 2.57925 2.69725 3.25311 3.25413 3.33304 3.34961 3.77684 4.12393 4.27086 4.36825 4.46348 4.46821 4.56774 4.70682 4.75702 4.91113 5.07314 5.13979 5.19840 5.20702 5.32047 5.52197 5.61446 5.69069 5.76584 5.84550 5.85306 5.91809 5.95909 6.17344 6.46221 6.53156 6.97822 7.09173 7.59485 8.40878 8.55838 8.91247 9.46368 11.00123 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.023323 B = 0.002277 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.240229 B =12295.091964 C =13374.743361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.091 3.909 3 N -0.460 5.460 4 C 0.182 3.818 5 S -0.034 6.034 6 C -0.066 4.066 7 C 0.002 3.998 8 C -0.519 4.519 9 H 0.078 0.922 10 C 0.072 3.928 11 N -0.896 5.896 12 Si 0.878 3.122 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.265 1.265 16 N -0.285 5.285 17 N -0.260 5.260 18 C 0.199 3.801 19 C 0.011 3.989 20 C -0.120 4.120 21 C -0.102 4.102 22 C -0.103 4.103 23 C -0.031 4.031 24 Cl -0.062 7.062 25 C -0.071 4.071 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.027 0.973 34 H 0.023 0.977 35 H 0.266 0.734 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.692 -17.070 26.293 31.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.031 4.031 3 N -0.154 5.154 4 C -0.191 4.191 5 S 0.196 5.804 6 C -0.215 4.215 7 C -0.038 4.038 8 C -0.559 4.559 9 H 0.096 0.904 10 C -0.131 4.131 11 N -0.534 5.534 12 Si 0.705 3.295 13 H -0.201 1.201 14 H -0.211 1.211 15 H -0.189 1.189 16 N -0.130 5.130 17 N -0.102 5.102 18 C -0.067 4.067 19 C 0.008 3.992 20 C -0.140 4.140 21 C -0.120 4.120 22 C -0.123 4.123 23 C -0.057 4.057 24 Cl -0.033 7.033 25 C -0.091 4.091 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.103 0.897 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.045 0.955 34 H 0.041 0.959 35 H 0.075 0.925 36 H 0.157 0.843 37 H 0.157 0.843 38 H 0.155 0.845 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.476 -16.500 25.684 30.854 hybrid contribution -0.228 -0.709 0.008 0.745 sum -4.704 -17.210 25.691 31.279 Atomic orbital electron populations 1.22275 0.93223 1.03919 1.04123 1.22198 0.96411 0.78834 1.05648 1.46515 1.50457 1.13548 1.04868 1.27142 1.04402 0.91126 0.96446 1.85525 1.82830 1.26058 0.85952 1.23818 1.05374 0.92302 0.99987 1.19442 0.97526 0.99254 0.87603 1.20890 1.45263 0.97708 0.92047 0.90376 1.24966 0.94616 0.95760 0.97751 1.69896 1.47735 1.25455 1.10278 0.86808 0.79288 0.83547 0.79899 1.20055 1.21111 1.18914 1.74845 1.19056 1.16608 1.02442 1.74305 1.16743 1.15666 1.03444 1.22648 1.05451 0.89785 0.88768 1.17291 0.98598 0.96267 0.87005 1.21699 0.98700 0.96220 0.97367 1.21006 0.99019 0.99984 0.91971 1.21215 0.96012 0.94194 1.00835 1.20782 0.98426 0.96350 0.90189 1.98394 1.72833 1.76413 1.55620 1.21104 0.98203 0.99826 0.90014 0.91528 0.90511 0.89658 0.87830 0.87864 0.88917 0.88910 0.95462 0.95908 0.92452 0.84290 0.84325 0.84462 0.83413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.20 9.61 37.16 0.36 -0.85 16 2 C 0.09 0.75 5.84 -4.04 -0.02 0.73 16 3 N -0.46 -6.00 2.83 -114.08 -0.32 -6.32 16 4 C 0.18 2.99 8.07 -88.18 -0.71 2.28 16 5 S -0.03 -0.55 21.89 -107.50 -2.35 -2.91 16 6 C -0.07 -1.34 5.17 37.16 0.19 -1.14 16 7 C 0.00 0.04 4.04 -27.88 -0.11 -0.08 16 8 C -0.52 -14.46 9.66 -34.44 -0.33 -14.79 16 9 H 0.08 2.36 7.99 -52.49 -0.42 1.94 16 10 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 11 N -0.90 -27.14 13.96 55.43 0.77 -26.36 16 12 Si 0.88 20.99 27.47 -169.99 -4.67 16.33 16 13 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 14 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 16 N -0.28 -5.44 11.59 30.71 0.36 -5.08 16 17 N -0.26 -4.59 12.02 32.59 0.39 -4.19 16 18 C 0.20 2.80 7.69 -153.76 -1.18 1.62 16 19 C 0.01 0.12 5.86 -104.97 -0.62 -0.49 16 20 C -0.12 -0.91 8.63 -39.18 -0.34 -1.24 16 21 C -0.10 -0.59 10.03 -39.64 -0.40 -0.99 16 22 C -0.10 -0.68 9.82 -39.46 -0.39 -1.07 16 23 C -0.03 -0.27 6.31 -39.55 -0.25 -0.52 16 24 Cl -0.06 -0.52 28.95 -51.86 -1.50 -2.02 16 25 C -0.07 -0.74 9.48 -39.15 -0.37 -1.11 16 26 H 0.07 0.45 7.00 -51.93 -0.36 0.09 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.10 0.81 7.97 -51.93 -0.41 0.39 16 30 H 0.10 0.61 5.78 -51.93 -0.30 0.31 16 31 H 0.09 1.92 8.14 -51.91 -0.42 1.50 16 32 H 0.09 1.92 8.14 -51.92 -0.42 1.50 16 33 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 34 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 35 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.14 0.82 3.38 -52.49 -0.18 0.64 16 37 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 38 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 39 H 0.15 1.66 7.98 -52.49 -0.42 1.24 16 LS Contribution 357.02 15.07 5.38 5.38 Total: -1.00 -32.72 357.02 -10.78 -43.50 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -4.56 Total: -2.60 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -4.27 Total: -15.71 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: 1.20 Total: -41.96 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.67 Total: 16.33 kcal Atomic # 16 Polarization: -0.55 SS G_CDS: -2.35 Total: -2.91 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.50 Total: -2.02 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.72 -10.78 -43.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040456790.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.670 kcal (2) G-P(sol) polarization free energy of solvation -32.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds