Wall clock time and date at job start Tue Mar 31 2020 06:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99988 * 2 1 4 4 H 1.48498 * 109.47640 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47060 * 300.00635 * 3 2 1 6 6 H 1.48507 * 109.46778 * 60.00075 * 3 2 1 7 7 C 1.37881 * 120.00288 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00163 * 185.08188 * 7 2 1 9 9 C 1.50699 * 119.99713 * 5.07658 * 7 2 1 10 10 H 1.09004 * 109.47232 * 325.15972 * 9 7 2 11 11 C 1.53002 * 109.47006 * 205.16016 * 9 7 2 12 12 C 1.54269 * 110.03202 * 182.38138 * 11 9 7 13 13 C 1.54886 * 104.19498 * 217.10632 * 12 11 9 14 14 C 1.54889 * 102.75100 * 37.94036 * 13 12 11 15 15 C 1.53873 * 110.03285 * 65.21591 * 11 9 7 16 16 N 1.46500 * 109.47073 * 85.16060 * 9 7 2 17 17 C 1.34609 * 125.85153 * 35.33685 * 16 9 7 18 18 C 1.36711 * 107.59695 * 180.16064 * 17 16 9 19 19 C 1.48022 * 126.27093 * 179.83438 * 18 17 16 20 20 N 1.33235 * 120.87409 * 324.71555 * 19 18 17 21 21 C 1.31944 * 121.02297 * 180.02562 * 20 19 18 22 22 N 1.31620 * 122.77376 * 359.97438 * 21 20 19 23 23 C 1.33049 * 120.77084 * 0.02562 * 22 21 20 24 24 N 1.36818 * 134.33303 * 180.02562 * 23 22 21 25 25 H 0.96992 * 124.99918 * 359.97438 * 24 23 22 26 26 C 1.37048 * 110.01113 * 179.97438 * 24 23 22 27 27 C 1.34364 * 109.84887 * 359.97438 * 26 24 23 28 28 C 1.40470 * 120.87064 * 144.73695 * 19 18 17 29 29 C 1.41034 * 107.45663 * 359.57434 * 18 17 16 30 30 N 1.30597 * 108.05240 * 0.25944 * 29 18 17 31 31 H 0.96998 * 120.00321 * 354.99223 * 1 2 3 32 32 H 1.08998 * 110.02001 * 303.82254 * 11 9 7 33 33 H 1.08998 * 110.48454 * 335.78525 * 12 11 9 34 34 H 1.09004 * 110.48264 * 98.42754 * 12 11 9 35 35 H 1.09010 * 110.75445 * 279.62806 * 13 12 11 36 36 H 1.08998 * 110.91501 * 156.33639 * 13 12 11 37 37 H 1.08993 * 110.48586 * 203.37777 * 14 13 12 38 38 H 1.09001 * 110.59687 * 80.79384 * 14 13 12 39 39 H 1.09003 * 110.03297 * 238.57097 * 15 11 9 40 40 H 1.09001 * 110.02977 * 0.02562 * 15 11 9 41 41 H 1.08005 * 126.20216 * 0.02562 * 17 16 9 42 42 H 1.07997 * 118.61696 * 179.71496 * 21 20 19 43 43 H 1.08009 * 125.07776 * 180.02562 * 26 24 23 44 44 H 1.07999 * 126.59038 * 180.02562 * 27 26 24 45 45 H 1.08002 * 125.97577 * 180.30379 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0814 -1.1959 0.0823 9 6 1.2556 -2.4965 -0.1166 10 1 0.3009 -2.4142 0.4031 11 6 2.0836 -3.6188 0.5125 12 6 1.3554 -4.9688 0.3478 13 6 1.6496 -5.7227 1.6684 14 6 1.5873 -4.5941 2.7275 15 6 2.2310 -3.3806 2.0255 16 7 1.0176 -2.7987 -1.5302 17 6 1.8552 -2.5229 -2.5472 18 6 1.2637 -2.9595 -3.6998 19 6 1.8262 -2.8587 -5.0653 20 7 2.5588 -1.8063 -5.4270 21 6 3.0611 -1.7132 -6.6435 22 7 2.8761 -2.6363 -7.5634 23 6 2.1589 -3.7255 -7.3000 24 7 1.7978 -4.8302 -8.0219 25 1 2.0446 -4.9967 -8.9450 26 6 1.0360 -5.6672 -7.2490 27 6 0.8820 -5.1412 -6.0222 28 6 1.6011 -3.8700 -6.0140 29 6 0.0221 -3.5289 -3.3488 30 7 -0.1172 -3.4293 -2.0541 31 1 -0.4850 0.8368 0.0733 32 1 3.0668 -3.6646 0.0442 33 1 0.2834 -4.8119 0.2287 34 1 1.7583 -5.5183 -0.5031 35 1 2.6416 -6.1740 1.6429 36 1 0.8882 -6.4779 1.8633 37 1 2.1592 -4.8702 3.6132 38 1 0.5533 -4.3759 2.9949 39 1 3.2858 -3.3116 2.2916 40 1 1.7122 -2.4657 2.3117 41 1 2.8189 -2.0418 -2.4674 42 1 3.6454 -0.8409 -6.8965 43 1 0.6220 -6.6094 -7.5767 44 1 0.3320 -5.5749 -5.2002 45 1 -0.6888 -3.9709 -4.0312 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043207851.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:58 Heat of formation + Delta-G solvation = 139.051298 kcal Electronic energy + Delta-G solvation = -28780.982670 eV Core-core repulsion = 24992.848845 eV Total energy + Delta-G solvation = -3788.133825 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.160 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.60366 -40.15609 -38.31824 -37.65179 -34.05287 -33.40346 -31.55596 -30.86640 -29.85659 -28.94957 -28.27083 -27.85520 -25.92119 -24.14858 -23.27745 -22.50344 -20.79259 -20.20691 -20.14547 -19.70611 -18.72651 -18.39401 -16.94101 -16.70276 -16.06204 -15.36415 -15.18560 -15.05033 -14.77386 -14.46747 -14.15804 -13.68002 -13.56255 -13.19051 -13.05007 -12.86731 -12.79379 -12.68032 -12.58552 -11.92699 -11.62080 -11.43987 -11.11208 -10.71726 -10.61187 -10.60876 -10.50975 -10.48650 -10.41811 -10.15628 -10.07387 -9.83793 -9.60691 -9.37267 -8.89714 -8.88153 -8.81501 -8.36649 -8.18147 -7.22260 -6.40918 -4.58396 1.01140 1.62288 2.68309 2.76486 3.07698 3.14727 3.25593 3.27336 3.55860 3.73505 4.16219 4.33344 4.55253 4.59454 4.85550 4.88761 5.07365 5.19132 5.23574 5.28637 5.34465 5.55472 5.73308 5.80663 5.91004 5.94958 6.01274 6.04752 6.11368 6.17464 6.23811 6.34492 6.39724 6.41023 6.50983 6.60272 6.67968 6.71680 6.75775 6.83982 6.90215 7.01344 7.07071 7.12192 7.27070 7.46948 7.54562 7.63331 7.83556 8.29935 8.58551 8.59341 8.85853 9.16385 10.62980 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.010853 B = 0.003993 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.396679 B = 7011.439554 C = 8843.945121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.083 3.917 3 Si 0.899 3.101 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.070 0.930 9 C 0.262 3.738 10 H 0.087 0.913 11 C -0.089 4.089 12 C -0.118 4.118 13 C -0.124 4.124 14 C -0.125 4.125 15 C -0.104 4.104 16 N -0.301 5.301 17 C 0.140 3.860 18 C -0.263 4.263 19 C 0.345 3.655 20 N -0.547 5.547 21 C 0.322 3.678 22 N -0.561 5.561 23 C 0.316 3.684 24 N -0.577 5.577 25 H 0.417 0.583 26 C 0.034 3.966 27 C -0.157 4.157 28 C -0.212 4.212 29 C 0.054 3.946 30 N -0.308 5.308 31 H 0.271 0.729 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.080 0.920 41 H 0.166 0.834 42 H 0.193 0.807 43 H 0.178 0.822 44 H 0.154 0.846 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.721 -10.397 -7.688 13.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.127 4.127 3 Si 0.725 3.275 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.206 1.206 7 C -0.573 4.573 8 H 0.088 0.912 9 C 0.167 3.833 10 H 0.105 0.895 11 C -0.109 4.109 12 C -0.156 4.156 13 C -0.162 4.162 14 C -0.163 4.163 15 C -0.142 4.142 16 N -0.078 5.078 17 C -0.016 4.016 18 C -0.277 4.277 19 C 0.196 3.804 20 N -0.264 5.264 21 C 0.032 3.968 22 N -0.283 5.283 23 C 0.076 3.924 24 N -0.185 5.185 25 H 0.254 0.746 26 C -0.091 4.091 27 C -0.183 4.183 28 C -0.222 4.222 29 C -0.133 4.133 30 N -0.128 5.128 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.183 0.817 42 H 0.210 0.790 43 H 0.195 0.805 44 H 0.172 0.828 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.320 -9.792 -6.943 12.225 hybrid contribution 0.611 0.457 -1.262 1.475 sum 2.931 -9.334 -8.205 12.769 Atomic orbital electron populations 1.69950 1.06382 1.28218 1.44191 1.25172 0.94845 1.00155 0.92545 0.86412 0.80436 0.82592 0.78049 1.19042 1.20342 1.20576 1.21239 0.94124 0.89293 1.52635 0.91161 1.19626 0.98197 0.91855 0.73615 0.89546 1.22069 0.98645 0.94178 0.96001 1.22439 1.01357 0.95756 0.96000 1.22482 1.00368 0.97283 0.96023 1.22388 1.00688 0.95824 0.97370 1.22002 1.00037 0.98326 0.93841 1.51049 1.09761 1.38049 1.08916 1.22356 0.97185 0.94985 0.87071 1.18235 0.99868 1.19530 0.90090 1.19045 0.85479 0.84978 0.90909 1.68661 1.14274 1.24119 1.19321 1.24533 0.93466 0.94932 0.83856 1.67288 1.20785 1.02346 1.37876 1.18376 0.95506 0.89059 0.89467 1.41446 1.46412 1.16537 1.14146 0.74584 1.21879 0.98819 0.96731 0.91623 1.21675 1.04587 0.94662 0.97393 1.20450 1.07120 0.99024 0.95618 1.23530 0.96041 1.00510 0.93218 1.77097 1.08634 1.17670 1.09425 0.91938 0.92316 0.90966 0.93075 0.92392 0.92530 0.92674 0.91953 0.92733 0.90180 0.81650 0.79005 0.80536 0.82848 0.81726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.97 12.92 55.43 0.72 -22.26 16 2 C 0.08 2.09 5.45 -17.82 -0.10 1.99 16 3 Si 0.90 19.82 29.54 -169.99 -5.02 14.80 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.53 -12.87 6.77 -34.44 -0.23 -13.11 16 8 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 9 C 0.26 5.94 1.93 -69.08 -0.13 5.81 16 10 H 0.09 2.24 7.53 -51.93 -0.39 1.85 16 11 C -0.09 -1.70 2.67 -89.50 -0.24 -1.94 16 12 C -0.12 -2.06 5.82 -25.07 -0.15 -2.21 16 13 C -0.12 -1.82 6.91 -24.74 -0.17 -1.99 16 14 C -0.13 -1.87 6.83 -25.07 -0.17 -2.04 16 15 C -0.10 -1.81 6.08 -25.62 -0.16 -1.96 16 16 N -0.30 -6.76 3.06 -55.71 -0.17 -6.93 16 17 C 0.14 3.04 10.53 -16.89 -0.18 2.86 16 18 C -0.26 -5.30 5.88 -105.38 -0.62 -5.91 16 19 C 0.34 6.48 6.73 -82.41 -0.55 5.93 16 20 N -0.55 -10.23 10.37 -10.98 -0.11 -10.34 16 21 C 0.32 5.14 12.23 -92.17 -1.13 4.01 16 22 N -0.56 -8.95 10.46 -13.88 -0.15 -9.09 16 23 C 0.32 4.83 8.48 -155.87 -1.32 3.51 16 24 N -0.58 -6.35 6.03 -12.11 -0.07 -6.42 16 25 H 0.42 3.27 8.96 -40.82 -0.37 2.91 16 26 C 0.03 0.33 11.83 -16.59 -0.20 0.13 16 27 C -0.16 -2.00 10.32 -37.82 -0.39 -2.39 16 28 C -0.21 -3.48 6.14 -104.91 -0.64 -4.12 16 29 C 0.05 1.05 11.08 -17.02 -0.19 0.86 16 30 N -0.31 -6.79 12.20 30.83 0.38 -6.41 16 31 H 0.27 6.95 8.32 -40.82 -0.34 6.62 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.07 1.39 7.64 -51.93 -0.40 0.99 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.08 1.55 7.31 -51.93 -0.38 1.17 16 41 H 0.17 3.51 7.88 -52.48 -0.41 3.09 16 42 H 0.19 2.34 8.06 -52.49 -0.42 1.92 16 43 H 0.18 0.94 8.06 -52.48 -0.42 0.51 16 44 H 0.15 1.77 7.28 -52.49 -0.38 1.39 16 45 H 0.17 2.65 7.34 -52.49 -0.38 2.27 16 LS Contribution 374.78 15.07 5.65 5.65 Total: -1.00 -29.98 374.78 -11.42 -41.39 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -6.06 Total: 10.19 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -6.57 Total: -10.58 kcal Atomic # 7 Polarization: -62.04 SS G_CDS: 0.59 Total: -61.45 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.98 -11.42 -41.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043207851.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.445 kcal (2) G-P(sol) polarization free energy of solvation -29.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds