Wall clock time and date at job start Tue Mar 31 2020 05:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31670 * 1 3 3 Si 1.86799 * 120.00212 * 2 1 4 4 H 1.48501 * 109.47122 * 239.99675 * 3 2 1 5 5 H 1.48503 * 109.47222 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47281 * 119.99935 * 3 2 1 7 7 C 1.38596 * 119.99631 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00079 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00235 * 0.28265 * 7 2 1 10 10 C 1.76203 * 100.00288 * 179.72277 * 9 7 2 11 11 N 1.31561 * 125.66638 * 359.68580 * 10 9 7 12 12 C 1.33544 * 109.61113 * 179.86588 * 11 10 9 13 13 C 1.36258 * 108.23550 * 0.40447 * 12 11 10 14 14 C 1.47721 * 126.68552 * 179.78156 * 13 12 11 15 15 C 1.39661 * 120.14889 * 191.81728 * 14 13 12 16 16 C 1.37933 * 119.84144 * 179.74697 * 15 14 13 17 17 C 1.38380 * 120.15324 * 0.55249 * 16 15 14 18 18 C 1.38376 * 120.30426 * 359.70403 * 17 16 15 19 19 C 1.37929 * 120.15400 * 0.02562 * 18 17 16 20 20 N 1.36312 * 125.67197 * 180.02562 * 10 9 7 21 21 C 1.46507 * 126.57016 * 359.97417 * 20 10 9 22 22 C 1.50698 * 109.47110 * 81.94956 * 21 20 10 23 23 C 1.38229 * 120.00116 * 277.00780 * 22 21 20 24 24 C 1.38238 * 120.00014 * 179.76771 * 23 22 21 25 25 C 1.38241 * 119.99673 * 0.50220 * 24 23 22 26 26 C 1.38229 * 119.99841 * 359.74999 * 25 24 23 27 27 C 1.38230 * 120.00576 * 359.97438 * 26 25 24 28 28 H 0.97006 * 120.00005 * 359.97438 * 1 2 3 29 29 H 1.07995 * 125.88577 * 180.12214 * 12 11 10 30 30 H 1.07995 * 120.07483 * 0.02562 * 15 14 13 31 31 H 1.07999 * 119.92120 * 180.27660 * 16 15 14 32 32 H 1.07994 * 119.84424 * 179.71899 * 17 16 15 33 33 H 1.08007 * 119.92094 * 180.02562 * 18 17 16 34 34 H 1.08004 * 120.07611 * 180.02562 * 19 18 17 35 35 H 1.09004 * 109.46835 * 201.95195 * 21 20 10 36 36 H 1.08998 * 109.46610 * 321.94983 * 21 20 10 37 37 H 1.08002 * 120.00314 * 359.97438 * 23 22 21 38 38 H 1.08001 * 120.00250 * 180.22774 * 24 23 22 39 39 H 1.08001 * 119.99317 * 179.72406 * 25 24 23 40 40 H 1.08006 * 119.99602 * 179.97438 * 26 25 24 41 41 H 1.07998 * 120.00366 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3167 0.0000 0.0000 3 14 2.2508 1.6177 0.0000 4 1 3.1046 1.6963 -1.2125 5 1 1.2858 2.7465 -0.0006 6 1 3.1045 1.6964 1.2125 7 6 2.0096 -1.2003 0.0005 8 1 3.0896 -1.2004 0.0001 9 16 1.1286 -2.7262 -0.0063 10 6 2.4783 -3.8589 -0.0112 11 7 3.7530 -3.5333 -0.0155 12 6 4.4986 -4.6412 -0.0154 13 6 3.6631 -5.7175 -0.0200 14 6 4.0576 -7.1410 -0.0260 15 6 3.1059 -8.1317 -0.2776 16 6 3.4823 -9.4586 -0.2869 17 6 4.7971 -9.8099 -0.0365 18 6 5.7442 -8.8338 0.2187 19 6 5.3828 -7.5027 0.2257 20 7 2.3754 -5.2181 -0.0178 21 6 1.1362 -5.9997 -0.0214 22 6 0.6050 -6.0925 -1.4286 23 6 -0.1533 -5.0614 -1.9506 24 6 -0.6365 -5.1445 -3.2432 25 6 -0.3700 -6.2634 -4.0100 26 6 0.3840 -7.2968 -3.4862 27 6 0.8719 -7.2112 -2.1957 28 1 -0.4850 0.8401 0.0004 29 1 5.5780 -4.6778 -0.0166 30 1 2.0785 -7.8591 -0.4688 31 1 2.7482 -10.2254 -0.4856 32 1 5.0855 -10.8506 -0.0405 33 1 6.7688 -9.1149 0.4130 34 1 6.1231 -6.7419 0.4246 35 1 1.3374 -7.0015 0.3579 36 1 0.3973 -5.5120 0.6144 37 1 -0.3655 -4.1894 -1.3499 38 1 -1.2259 -4.3373 -3.6523 39 1 -0.7513 -6.3303 -5.0183 40 1 0.5918 -8.1711 -4.0852 41 1 1.4606 -8.0188 -1.7863 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044085419.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:02 Heat of formation + Delta-G solvation = 121.043174 kcal Electronic energy + Delta-G solvation = -25530.623262 eV Core-core repulsion = 22081.761483 eV Total energy + Delta-G solvation = -3448.861780 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 336.099 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.34743 -39.07223 -38.71334 -34.45801 -32.61152 -32.03026 -31.20755 -30.67062 -30.47292 -27.74821 -26.15909 -25.61240 -23.25867 -22.91508 -22.15937 -21.39535 -20.53643 -19.89199 -18.00361 -17.14501 -16.87109 -16.25917 -15.59279 -15.37756 -14.92301 -14.88874 -14.73331 -14.46158 -14.08710 -13.66930 -13.33424 -13.21778 -13.10565 -12.89395 -12.83434 -12.69336 -12.43256 -12.15223 -11.33202 -11.26217 -11.23058 -11.09950 -11.00765 -10.95624 -10.40264 -10.16004 -9.75434 -9.25470 -9.20051 -9.01848 -8.95721 -8.85515 -8.77411 -8.66060 -7.94701 -6.47923 -6.42416 -4.13613 1.06580 1.34421 1.39914 1.55469 2.65355 2.67547 3.23729 3.24417 3.30467 3.45800 3.69481 3.98630 4.04646 4.08761 4.63544 4.76363 4.81779 4.85629 4.93293 4.98757 5.01580 5.07943 5.12340 5.16544 5.33193 5.42761 5.47827 5.56252 5.63396 5.67001 5.79099 5.89257 5.97525 6.07111 6.11571 6.21238 6.40079 6.46067 6.51307 6.54922 6.67898 6.71468 6.95767 6.98559 7.12184 7.29114 7.53958 7.62792 8.42975 8.71315 9.10372 10.66072 Molecular weight = 336.10amu Principal moments of inertia in cm(-1) A = 0.011651 B = 0.004233 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.664651 B = 6612.513979 C = 8548.823859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.074 3.926 3 Si 0.930 3.070 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.526 4.526 8 H 0.104 0.896 9 S 0.116 5.884 10 C 0.219 3.781 11 N -0.494 5.494 12 C 0.020 3.980 13 C -0.037 4.037 14 C 0.027 3.973 15 C -0.167 4.167 16 C -0.110 4.110 17 C -0.140 4.140 18 C -0.109 4.109 19 C -0.117 4.117 20 N -0.447 5.447 21 C 0.134 3.866 22 C -0.114 4.114 23 C -0.085 4.085 24 C -0.118 4.118 25 C -0.115 4.115 26 C -0.128 4.128 27 C -0.117 4.117 28 H 0.273 0.727 29 H 0.162 0.838 30 H 0.143 0.857 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.142 0.858 38 H 0.126 0.874 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.843 -18.111 -2.953 18.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.135 4.135 3 Si 0.756 3.244 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.674 4.674 8 H 0.122 0.878 9 S 0.351 5.649 10 C -0.147 4.147 11 N -0.215 5.215 12 C -0.134 4.134 13 C -0.152 4.152 14 C 0.025 3.975 15 C -0.184 4.184 16 C -0.128 4.128 17 C -0.159 4.159 18 C -0.127 4.127 19 C -0.136 4.136 20 N -0.134 5.134 21 C 0.012 3.988 22 C -0.115 4.115 23 C -0.104 4.104 24 C -0.136 4.136 25 C -0.133 4.133 26 C -0.146 4.146 27 C -0.135 4.135 28 H 0.082 0.918 29 H 0.179 0.821 30 H 0.160 0.840 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.159 0.841 38 H 0.144 0.856 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.614 -17.329 -2.923 17.585 hybrid contribution 1.624 0.337 -0.120 1.662 sum 2.237 -16.992 -3.043 17.407 Atomic orbital electron populations 1.69956 1.05968 1.28315 1.47435 1.25037 0.95172 0.99490 0.93778 0.86012 0.79077 0.79930 0.79371 1.19586 1.20880 1.19559 1.23167 0.97160 0.89109 1.57982 0.87772 1.83109 0.98804 0.95996 1.86960 1.26833 0.99873 0.84631 1.03375 1.70705 1.00030 1.28053 1.22667 1.22324 0.98831 0.87683 1.04548 1.19386 0.84367 0.92847 1.18639 1.17951 0.93451 0.89103 0.96986 1.22068 1.00571 0.92969 1.02820 1.21005 0.96320 0.95696 0.99786 1.21101 0.93499 0.99136 1.02168 1.21014 0.99333 0.92684 0.99641 1.21089 0.95043 0.96324 1.01167 1.45370 1.04781 1.05642 1.57617 1.20952 0.85351 0.97661 0.94851 1.19979 0.99807 0.95699 0.96039 1.21579 0.94988 0.97750 0.96119 1.21223 1.00160 0.97937 0.94306 1.21196 0.98459 0.94067 0.99581 1.21036 0.99026 0.99082 0.95490 1.21367 0.99470 0.97975 0.94714 0.91757 0.82057 0.84019 0.86256 0.86450 0.86070 0.85664 0.87573 0.87989 0.84067 0.85643 0.86260 0.86278 0.85305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.48 13.22 55.48 0.73 -23.75 16 2 C 0.07 2.01 5.49 -17.49 -0.10 1.91 16 3 Si 0.93 21.36 29.55 -169.99 -5.02 16.34 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.53 -14.70 9.36 30.86 0.29 -14.41 16 8 H 0.10 3.01 6.88 -52.48 -0.36 2.65 16 9 S 0.12 2.85 19.02 -107.50 -2.04 0.80 16 10 C 0.22 5.04 7.95 -88.32 -0.70 4.34 16 11 N -0.49 -11.79 9.96 -13.09 -0.13 -11.93 16 12 C 0.02 0.41 11.26 -17.52 -0.20 0.21 16 13 C -0.04 -0.68 6.83 -81.87 -0.56 -1.24 16 14 C 0.03 0.40 5.87 -104.97 -0.62 -0.21 16 15 C -0.17 -2.17 7.85 -39.16 -0.31 -2.47 16 16 C -0.11 -1.19 10.03 -39.64 -0.40 -1.59 16 17 C -0.14 -1.44 10.04 -39.48 -0.40 -1.84 16 18 C -0.11 -1.17 10.03 -39.64 -0.40 -1.57 16 19 C -0.12 -1.51 9.58 -39.17 -0.38 -1.89 16 20 N -0.45 -8.55 2.81 -113.97 -0.32 -8.87 16 21 C 0.13 2.08 5.43 -5.19 -0.03 2.05 16 22 C -0.11 -1.74 5.46 -104.63 -0.57 -2.32 16 23 C -0.09 -1.40 9.47 -39.58 -0.38 -1.77 16 24 C -0.12 -1.71 10.05 -39.58 -0.40 -2.11 16 25 C -0.11 -1.45 10.05 -39.58 -0.40 -1.84 16 26 C -0.13 -1.58 10.05 -39.59 -0.40 -1.98 16 27 C -0.12 -1.57 9.28 -39.58 -0.37 -1.94 16 28 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.16 2.65 7.44 -52.49 -0.39 2.26 16 30 H 0.14 1.77 1.58 -52.49 -0.08 1.68 16 31 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 34 H 0.13 1.47 7.18 -52.48 -0.38 1.09 16 35 H 0.11 1.39 4.88 -51.93 -0.25 1.14 16 36 H 0.10 1.55 7.99 -51.93 -0.41 1.13 16 37 H 0.14 2.55 5.78 -52.49 -0.30 2.25 16 38 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 41 H 0.13 1.52 4.73 -52.49 -0.25 1.27 16 LS Contribution 353.06 15.07 5.32 5.32 Total: -1.00 -31.72 353.06 -11.86 -43.58 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -4.10 Total: 7.18 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: -6.29 Total: -28.67 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 0.28 Total: -44.54 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -2.04 Total: 0.80 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.72 -11.86 -43.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044085419.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.618 kcal (2) G-P(sol) polarization free energy of solvation -31.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds