Wall clock time and date at job start Tue Mar 31 2020 05:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30836 * 125.90003 * 2 1 4 4 N 1.40084 * 108.20439 * 180.25656 * 3 2 1 5 5 C 1.46497 * 126.03814 * 179.73575 * 4 3 2 6 6 C 1.50696 * 109.47341 * 269.97237 * 5 4 3 7 7 H 1.08000 * 119.99864 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00442 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99592 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00396 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47095 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46931 * 119.99855 * 10 8 6 13 13 H 1.48496 * 109.47231 * 239.99964 * 10 8 6 14 14 C 1.34954 * 107.92325 * 359.71635 * 4 3 2 15 15 C 1.50706 * 126.12523 * 179.97438 * 14 4 3 16 16 C 1.35312 * 107.74597 * 0.02562 * 14 4 3 17 17 C 1.50698 * 126.03911 * 180.02562 * 16 14 4 18 18 C 1.53002 * 109.47124 * 90.00128 * 17 16 14 19 19 C 1.50698 * 109.47254 * 180.02562 * 18 17 16 20 20 O 1.21289 * 119.99985 * 359.97438 * 19 18 17 21 21 N 1.34778 * 120.00401 * 180.02562 * 19 18 17 22 22 C 1.47154 * 120.97884 * 354.44112 * 21 19 18 23 23 C 1.53293 * 108.38270 * 129.48133 * 22 21 19 24 24 O 1.42954 * 109.22494 * 52.30223 * 23 22 21 25 25 C 1.42962 * 114.16884 * 297.42104 * 24 23 22 26 26 C 1.47161 * 120.94665 * 174.42838 * 21 19 18 27 27 H 1.08998 * 109.64540 * 110.77476 * 26 21 19 28 28 C 1.52998 * 109.72766 * 350.21271 * 26 21 19 29 29 H 1.09005 * 109.47516 * 270.22411 * 1 2 3 30 30 H 1.09008 * 109.47174 * 30.21171 * 1 2 3 31 31 H 1.08997 * 109.47828 * 150.21501 * 1 2 3 32 32 H 1.09002 * 109.47225 * 29.97808 * 5 4 3 33 33 H 1.09002 * 109.47129 * 149.97336 * 5 4 3 34 34 H 0.96998 * 119.99801 * 180.02562 * 9 8 6 35 35 H 1.08997 * 109.47177 * 270.02681 * 15 14 4 36 36 H 1.09003 * 109.46682 * 30.02334 * 15 14 4 37 37 H 1.08993 * 109.46513 * 150.02278 * 15 14 4 38 38 H 1.09000 * 109.46927 * 330.00376 * 17 16 14 39 39 H 1.09004 * 109.47298 * 210.00033 * 17 16 14 40 40 H 1.08994 * 109.47296 * 59.99964 * 18 17 16 41 41 H 1.09004 * 109.46955 * 300.00115 * 18 17 16 42 42 H 1.09007 * 109.67952 * 9.75770 * 22 21 19 43 43 H 1.08996 * 109.68408 * 249.20459 * 22 21 19 44 44 H 1.08999 * 109.51075 * 292.37769 * 23 22 21 45 45 H 1.09005 * 109.55339 * 172.25580 * 23 22 21 46 46 H 1.09005 * 109.51348 * 182.49912 * 25 24 23 47 47 H 1.08997 * 109.50927 * 302.60382 * 25 24 23 48 48 H 1.08999 * 109.47477 * 309.05736 * 28 26 21 49 49 H 1.09001 * 109.47479 * 69.05627 * 28 26 21 50 50 H 1.08996 * 109.47586 * 189.05445 * 28 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 -0.0060 5 6 4.7899 1.5006 -0.0134 6 6 5.1882 1.7947 -1.4367 7 1 4.6182 1.3782 -2.2540 8 6 6.2796 2.5965 -1.6956 9 7 6.9734 3.1042 -0.7003 10 14 6.7729 2.9616 -3.4599 11 1 5.8369 2.2768 -4.3874 12 1 6.7191 4.4269 -3.6958 13 1 8.1543 2.4721 -3.6991 14 6 3.6141 -0.7155 -0.0032 15 6 4.8349 -1.5991 -0.0081 16 6 2.3270 -1.1330 0.0037 17 6 1.8597 -2.5657 0.0095 18 6 1.7081 -3.0470 1.4539 19 6 1.2414 -4.4798 1.4597 20 8 1.0486 -5.0590 0.4116 21 7 1.0374 -5.1175 2.6294 22 6 1.3781 -4.4780 3.9102 23 6 0.1649 -4.5839 4.8412 24 8 -0.2614 -5.9468 4.9057 25 6 -0.7012 -6.4824 3.6553 26 6 0.4669 -6.4736 2.6625 27 1 1.2283 -7.1837 2.9852 28 6 -0.0379 -6.8558 1.2697 29 1 -0.3634 0.0040 1.0277 30 1 -0.3634 0.8881 -0.5172 31 1 -0.3634 -0.8918 -0.5105 32 1 4.5588 2.4342 0.4996 33 1 5.6117 0.9991 0.4976 34 1 7.7410 3.6685 -0.8824 35 1 5.1238 -1.8139 -1.0369 36 1 5.6538 -1.0902 0.5005 37 1 4.6101 -2.5321 0.5086 38 1 2.5909 -3.1884 -0.5061 39 1 0.8986 -2.6365 -0.4998 40 1 0.9771 -2.4243 1.9695 41 1 2.6693 -2.9762 1.9632 42 1 1.6223 -3.4289 3.7431 43 1 2.2310 -4.9870 4.3592 44 1 -0.6459 -3.9667 4.4542 45 1 0.4395 -4.2406 5.8387 46 1 -1.0488 -7.5054 3.7995 47 1 -1.5158 -5.8727 3.2645 48 1 -0.6837 -6.0651 0.8876 49 1 0.8112 -6.9872 0.5989 50 1 -0.6007 -7.7872 1.3300 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044915044.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:19 Heat of formation + Delta-G solvation = -11.545648 kcal Electronic energy + Delta-G solvation = -29549.348831 eV Core-core repulsion = 25578.227535 eV Total energy + Delta-G solvation = -3971.121296 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.92272 -40.51568 -38.57777 -35.11500 -34.58065 -33.80589 -32.84820 -32.50633 -30.30059 -29.04835 -28.88252 -26.78223 -26.65257 -25.89607 -24.15942 -23.26548 -22.47548 -21.60011 -19.19826 -18.83345 -18.66358 -17.30543 -16.82749 -16.72388 -16.37720 -15.92443 -15.61213 -15.27153 -15.17416 -14.61131 -14.43923 -14.37705 -13.91383 -13.39490 -13.18341 -12.99670 -12.95111 -12.66608 -12.57685 -12.45651 -12.34179 -12.28988 -12.05027 -11.94136 -11.78018 -11.65029 -11.48976 -11.34253 -11.26453 -11.19393 -10.96373 -10.83626 -10.73406 -10.57782 -10.27551 -9.73630 -9.64339 -9.25251 -8.79016 -8.67063 -8.20428 -7.49719 -6.28547 -4.35727 2.50881 2.57099 2.76277 3.18510 3.26546 3.32136 3.35167 3.38782 3.59312 4.26608 4.28042 4.35600 4.54531 4.64305 4.76643 4.85232 4.92822 5.05259 5.11136 5.15013 5.21311 5.23161 5.30796 5.32665 5.37991 5.40272 5.49187 5.62597 5.71544 5.79069 5.85398 5.90926 5.94736 6.00134 6.02633 6.05554 6.21447 6.33489 6.35391 6.42516 6.52563 6.65947 6.83330 7.00809 7.09544 7.14018 7.49230 7.64699 7.86319 8.03179 8.05732 8.64782 8.73739 9.30916 10.79131 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021184 B = 0.002342 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.436126 B =11952.967091 C =12011.418739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.050 3.950 3 N -0.297 5.297 4 N -0.325 5.325 5 C 0.257 3.743 6 C -0.534 4.534 7 H 0.064 0.936 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.906 3.094 11 H -0.271 1.271 12 H -0.280 1.280 13 H -0.280 1.280 14 C 0.094 3.906 15 C -0.086 4.086 16 C -0.269 4.269 17 C -0.009 4.009 18 C -0.134 4.134 19 C 0.518 3.482 20 O -0.529 6.529 21 N -0.621 5.621 22 C 0.072 3.928 23 C 0.046 3.954 24 O -0.381 6.381 25 C 0.051 3.949 26 C 0.109 3.891 27 H 0.077 0.923 28 C -0.138 4.138 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.267 0.733 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.078 0.922 44 H 0.058 0.942 45 H 0.107 0.893 46 H 0.104 0.896 47 H 0.056 0.944 48 H 0.066 0.934 49 H 0.083 0.917 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.757 -18.312 10.874 24.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.114 4.114 3 N -0.121 5.121 4 N -0.104 5.104 5 C 0.139 3.861 6 C -0.573 4.573 7 H 0.082 0.918 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.733 3.267 11 H -0.196 1.196 12 H -0.206 1.206 13 H -0.206 1.206 14 C -0.038 4.038 15 C -0.144 4.144 16 C -0.282 4.282 17 C -0.048 4.048 18 C -0.174 4.174 19 C 0.308 3.692 20 O -0.405 6.405 21 N -0.357 5.357 22 C -0.052 4.052 23 C -0.032 4.032 24 O -0.299 6.299 25 C -0.027 4.027 26 C 0.006 3.994 27 H 0.095 0.905 28 C -0.195 4.195 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.119 0.881 43 H 0.096 0.904 44 H 0.076 0.924 45 H 0.125 0.875 46 H 0.122 0.878 47 H 0.075 0.925 48 H 0.085 0.915 49 H 0.102 0.898 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.517 -17.190 10.512 23.721 hybrid contribution 0.537 -0.213 -0.975 1.133 sum -11.980 -17.403 9.538 23.181 Atomic orbital electron populations 1.20020 0.88085 1.02424 1.01745 1.21937 0.96093 0.90782 1.02604 1.77275 0.87503 1.22660 1.24634 1.49249 1.05778 1.04204 1.51184 1.19658 0.77966 0.89538 0.98947 1.21340 1.12975 1.31642 0.91335 0.91759 1.24932 0.95703 0.95011 0.98175 1.69929 1.18967 1.33002 1.31108 0.86304 0.78395 0.78309 0.83720 1.19559 1.20613 1.20626 1.20777 0.96111 0.85679 1.01189 1.20348 0.93764 0.97104 1.03194 1.19340 0.91348 0.95065 1.22400 1.19387 1.01572 0.90913 0.92972 1.21815 1.02819 0.91364 1.01406 1.21040 0.76466 0.89055 0.82638 1.90726 1.50772 1.67389 1.31603 1.48305 1.64488 1.16608 1.06315 1.22470 0.98397 1.00055 0.84243 1.23006 0.95739 0.83654 1.00764 1.87964 1.84354 1.26846 1.30719 1.23117 0.95273 1.00180 0.84118 1.21943 0.95794 0.83789 0.97856 0.90509 1.22098 1.02826 1.00342 0.94259 0.91675 0.91561 0.91276 0.93075 0.93104 0.92306 0.90436 0.90928 0.91149 0.91397 0.91304 0.89118 0.89172 0.88142 0.90373 0.92417 0.87474 0.87782 0.92536 0.91534 0.89817 0.93449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.90 10.26 36.01 0.37 -0.53 16 2 C 0.05 0.94 7.22 -82.41 -0.59 0.34 16 3 N -0.30 -6.75 12.58 33.67 0.42 -6.33 16 4 N -0.32 -7.49 3.60 -58.31 -0.21 -7.70 16 5 C 0.26 6.53 6.00 -5.20 -0.03 6.50 16 6 C -0.53 -14.73 9.39 -34.44 -0.32 -15.05 16 7 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 8 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -25.04 13.29 55.43 0.74 -24.30 16 10 Si 0.91 21.17 29.54 -169.99 -5.02 16.15 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 14 C 0.09 1.84 6.93 -82.26 -0.57 1.26 16 15 C -0.09 -1.39 9.72 36.01 0.35 -1.04 16 16 C -0.27 -4.71 5.35 -105.06 -0.56 -5.27 16 17 C -0.01 -0.13 4.41 -27.88 -0.12 -0.26 16 18 C -0.13 -1.49 4.05 -27.88 -0.11 -1.60 16 19 C 0.52 5.99 7.47 -10.99 -0.08 5.91 16 20 O -0.53 -7.52 11.76 5.55 0.07 -7.46 16 21 N -0.62 -5.85 3.02 -164.74 -0.50 -6.35 16 22 C 0.07 0.51 6.55 -3.53 -0.02 0.48 16 23 C 0.05 0.30 6.98 37.31 0.26 0.56 16 24 O -0.38 -3.28 10.74 -35.23 -0.38 -3.66 16 25 C 0.05 0.38 6.28 37.31 0.23 0.61 16 26 C 0.11 0.95 3.68 -67.42 -0.25 0.71 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 28 C -0.14 -1.31 7.64 37.16 0.28 -1.02 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 31 H 0.07 0.84 7.25 -51.93 -0.38 0.47 16 32 H 0.05 1.40 8.14 -51.93 -0.42 0.97 16 33 H 0.05 1.28 7.05 -51.93 -0.37 0.91 16 34 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.07 1.20 7.08 -51.93 -0.37 0.83 16 37 H 0.07 0.92 7.77 -51.93 -0.40 0.51 16 38 H 0.07 0.99 7.73 -51.93 -0.40 0.59 16 39 H 0.07 0.97 7.21 -51.93 -0.37 0.60 16 40 H 0.09 0.92 7.88 -51.93 -0.41 0.51 16 41 H 0.09 0.94 7.80 -51.93 -0.41 0.53 16 42 H 0.10 0.62 6.04 -51.93 -0.31 0.30 16 43 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.07 0.73 6.97 -51.93 -0.36 0.37 16 49 H 0.08 0.97 6.64 -51.93 -0.34 0.62 16 50 H 0.05 0.35 8.13 -51.93 -0.42 -0.08 16 LS Contribution 398.32 15.07 6.00 6.00 Total: -1.00 -32.42 398.32 -8.47 -40.88 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -8.32 Total: -0.52 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -1.27 Total: -6.71 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: 0.45 Total: -44.69 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: -0.31 Total: -11.12 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.42 -8.47 -40.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044915044.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.339 kcal (2) G-P(sol) polarization free energy of solvation -32.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds