Wall clock time and date at job start Tue Mar 31 2020 05:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47424 * 2 1 4 4 C 1.50700 * 109.47390 * 119.99993 * 2 1 3 5 5 C 1.38240 * 120.01027 * 81.79787 * 4 2 1 6 6 C 1.38212 * 120.01306 * 180.02562 * 5 4 2 7 7 C 1.38257 * 120.03158 * 0.02562 * 6 5 4 8 8 C 1.38199 * 120.01001 * 359.97375 * 7 6 5 9 9 C 1.38331 * 120.00456 * 261.53238 * 4 2 1 10 10 Cl 1.73601 * 120.01680 * 359.97138 * 9 4 2 11 11 N 1.46906 * 109.47180 * 239.99654 * 2 1 3 12 12 C 1.46893 * 111.00102 * 166.74984 * 11 2 1 13 13 C 1.50699 * 109.47173 * 162.53502 * 12 11 2 14 14 O 1.21284 * 119.99959 * 355.01154 * 13 12 11 15 15 N 1.34775 * 120.00344 * 175.00803 * 13 12 11 16 16 C 1.46505 * 120.00253 * 180.02562 * 15 13 12 17 17 C 1.50697 * 109.47011 * 179.97438 * 16 15 13 18 18 H 1.08000 * 120.00026 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99889 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99961 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00105 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47120 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46784 * 120.00328 * 21 19 17 24 24 H 1.48494 * 109.47340 * 240.00506 * 21 19 17 25 25 C 1.46905 * 110.99698 * 42.79798 * 11 2 1 26 26 C 1.52997 * 117.49441 * 127.84532 * 25 11 2 27 27 C 1.52997 * 117.49706 * 59.18452 * 25 11 2 28 28 H 1.09004 * 109.47098 * 303.24387 * 1 2 3 29 29 H 1.09005 * 109.47168 * 63.23982 * 1 2 3 30 30 H 1.08998 * 109.47279 * 183.24203 * 1 2 3 31 31 H 1.08000 * 119.98762 * 0.02562 * 5 4 2 32 32 H 1.08002 * 119.98444 * 179.97438 * 6 5 4 33 33 H 1.08006 * 119.99854 * 179.97438 * 7 6 5 34 34 H 1.08007 * 120.00077 * 180.02562 * 8 7 6 35 35 H 1.09007 * 109.46797 * 42.54123 * 12 11 2 36 36 H 1.08994 * 109.47821 * 282.54101 * 12 11 2 37 37 H 0.97009 * 119.99833 * 359.72307 * 15 13 12 38 38 H 1.09000 * 109.46643 * 299.99586 * 16 15 13 39 39 H 1.08994 * 109.47007 * 59.99944 * 16 15 13 40 40 H 0.97001 * 120.00039 * 179.97438 * 20 19 17 41 41 H 1.08998 * 115.54745 * 273.51694 * 25 11 2 42 42 H 1.08998 * 117.50424 * 0.02562 * 26 25 11 43 43 H 1.09005 * 117.49637 * 145.02122 * 26 25 11 44 44 H 1.08996 * 117.50127 * 214.97819 * 27 25 11 45 45 H 1.08999 * 117.50147 * 0.02562 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.1019 -2.0909 1.2519 6 6 2.5621 -2.7425 2.3805 7 6 2.9528 -2.0143 3.4889 8 6 2.8838 -0.6342 3.4687 9 6 2.4293 0.0190 2.3367 10 17 2.3496 1.7530 2.3080 11 7 2.0197 -0.6926 -1.1994 12 6 3.4537 -0.4461 -1.4011 13 6 4.0122 -1.4767 -2.3482 14 8 3.3100 -2.3851 -2.7387 15 7 5.2921 -1.3889 -2.7613 16 6 5.8349 -2.3905 -3.6824 17 6 7.2749 -2.0657 -3.9858 18 1 7.7394 -1.2002 -3.5370 19 6 7.9996 -2.8743 -4.8355 20 7 7.4341 -3.9287 -5.3816 21 14 9.7844 -2.4715 -5.2122 22 1 10.1800 -1.2426 -4.4782 23 1 10.6476 -3.6019 -4.7855 24 1 9.9444 -2.2498 -6.6717 25 6 1.2464 -0.3016 -2.3857 26 6 2.0266 0.1833 -3.6092 27 6 1.2324 1.1812 -2.7626 28 1 -0.3633 0.5634 0.8595 29 1 -0.3634 0.4627 -0.9176 30 1 -0.3634 -1.0260 0.0581 31 1 1.7964 -2.6602 0.3864 32 1 2.6158 -3.8210 2.3969 33 1 3.3120 -2.5241 4.3708 34 1 3.1895 -0.0655 4.3346 35 1 3.9719 -0.5131 -0.4444 36 1 3.5956 0.5491 -1.8222 37 1 5.8526 -0.6599 -2.4521 38 1 5.7735 -3.3772 -3.2234 39 1 5.2586 -2.3834 -4.6075 40 1 7.9439 -4.4973 -5.9797 41 1 0.3364 -0.8747 -2.5636 42 1 3.1136 0.2117 -3.5342 43 1 1.6297 -0.0705 -4.5922 44 1 0.3135 1.5835 -3.1889 45 1 1.7973 1.8665 -2.1307 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000047257536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:41 Heat of formation + Delta-G solvation = 22.194866 kcal Electronic energy + Delta-G solvation = -27118.776480 eV Core-core repulsion = 23356.275690 eV Total energy + Delta-G solvation = -3762.500790 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.135 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.44024 -39.15038 -37.71309 -36.60658 -34.71052 -34.07485 -32.30651 -31.50447 -30.81834 -29.76560 -27.72470 -25.73888 -24.25048 -22.77786 -22.48013 -22.38276 -21.32179 -19.76804 -19.10707 -17.38354 -17.05461 -16.89430 -16.02890 -15.73563 -15.48198 -15.12110 -14.80771 -14.31330 -14.30831 -13.95646 -13.84819 -13.77967 -13.59098 -12.85623 -12.63450 -12.42311 -12.16210 -12.04057 -11.92472 -11.85021 -11.61845 -11.52460 -11.46353 -11.29160 -11.15941 -10.93282 -10.87619 -10.76221 -10.58406 -10.30022 -10.08240 -9.35727 -9.00982 -8.95035 -8.80458 -8.71295 -8.17504 -7.81025 -6.15415 -4.21864 1.00867 1.17452 1.96464 3.23859 3.30961 3.33853 3.42439 3.46383 3.60933 3.87845 4.21777 4.37851 4.55878 4.72884 4.80843 4.89217 4.92928 5.01387 5.11345 5.13981 5.18659 5.20820 5.33599 5.38236 5.40703 5.52905 5.61755 5.64592 5.66368 5.78766 5.86504 5.98632 6.06934 6.08511 6.12694 6.22162 6.30882 6.38341 6.71695 6.92852 7.06735 7.35547 7.50411 7.55463 7.70755 7.99465 8.68419 8.82736 9.19206 9.45312 10.94785 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.012497 B = 0.003171 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.981050 B = 8828.258231 C = 9732.934420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.119 3.881 3 H 0.061 0.939 4 C -0.071 4.071 5 C -0.072 4.072 6 C -0.118 4.118 7 C -0.110 4.110 8 C -0.117 4.117 9 C -0.034 4.034 10 Cl -0.075 7.075 11 N -0.479 5.479 12 C 0.027 3.973 13 C 0.502 3.498 14 O -0.530 6.530 15 N -0.719 5.719 16 C 0.254 3.746 17 C -0.542 4.542 18 H 0.062 0.938 19 C 0.064 3.936 20 N -0.885 5.885 21 Si 0.902 3.098 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.044 3.956 26 C -0.176 4.176 27 C -0.223 4.223 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.146 0.854 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.094 0.906 36 H 0.061 0.939 37 H 0.387 0.613 38 H 0.025 0.975 39 H 0.025 0.975 40 H 0.265 0.735 41 H 0.126 0.874 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.096 0.904 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.615 10.236 16.296 23.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.012 3.988 3 H 0.079 0.921 4 C -0.072 4.072 5 C -0.091 4.091 6 C -0.136 4.136 7 C -0.129 4.129 8 C -0.136 4.136 9 C -0.061 4.061 10 Cl -0.046 7.046 11 N -0.201 5.201 12 C -0.104 4.104 13 C 0.286 3.714 14 O -0.406 6.406 15 N -0.369 5.369 16 C 0.133 3.867 17 C -0.580 4.580 18 H 0.081 0.919 19 C -0.140 4.140 20 N -0.523 5.523 21 Si 0.729 3.271 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.065 4.065 26 C -0.213 4.213 27 C -0.262 4.262 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.163 0.837 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.112 0.888 36 H 0.079 0.921 37 H 0.219 0.781 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.075 0.925 41 H 0.143 0.857 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.114 0.886 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.153 9.036 15.946 23.157 hybrid contribution 1.607 1.513 -0.221 2.218 sum -12.546 10.549 15.725 22.715 Atomic orbital electron populations 1.21884 0.92749 1.02957 1.02371 1.20572 0.96078 0.95149 0.87029 0.92127 1.19650 0.99601 0.94031 0.93931 1.21207 0.96537 0.93043 0.98294 1.21361 0.98442 1.00607 0.93178 1.21122 0.99679 0.93135 0.98917 1.20959 1.00817 0.94769 0.97010 1.20821 1.04786 0.84067 0.96403 1.98352 1.97106 1.10748 1.98418 1.61650 1.01155 1.56118 1.01203 1.22156 0.89763 0.97779 1.00696 1.20106 0.82660 0.86576 0.82088 1.90657 1.58604 1.34553 1.56812 1.46465 1.11136 1.30787 1.48529 1.19045 0.93039 0.86833 0.87796 1.21274 0.95921 1.11894 1.28904 0.91946 1.24943 0.98820 0.94743 0.95475 1.69987 1.36859 1.14943 1.30499 0.86390 0.84149 0.78379 0.78169 1.19658 1.20804 1.20814 1.22583 0.99570 0.93392 0.90923 1.23336 0.99653 1.02147 0.96153 1.23494 1.03168 0.94181 1.05349 0.92163 0.91202 0.91533 0.83658 0.85362 0.85351 0.85224 0.88764 0.92086 0.78053 0.95666 0.95682 0.92549 0.85681 0.88255 0.88231 0.88582 0.89323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.74 37.16 0.32 -1.06 16 2 C 0.12 1.36 1.67 -68.86 -0.11 1.24 16 3 H 0.06 0.69 6.08 -51.93 -0.32 0.37 16 4 C -0.07 -0.82 3.95 -104.59 -0.41 -1.24 16 5 C -0.07 -0.88 9.32 -39.59 -0.37 -1.24 16 6 C -0.12 -1.24 10.04 -39.58 -0.40 -1.64 16 7 C -0.11 -1.03 10.05 -39.59 -0.40 -1.43 16 8 C -0.12 -1.14 9.83 -39.55 -0.39 -1.53 16 9 C -0.03 -0.37 6.31 -39.50 -0.25 -0.62 16 10 Cl -0.08 -0.76 27.16 -51.86 -1.41 -2.17 16 11 N -0.48 -6.52 3.34 -221.53 -0.74 -7.26 16 12 C 0.03 0.41 4.82 -4.98 -0.02 0.38 16 13 C 0.50 9.86 5.69 -10.99 -0.06 9.80 16 14 O -0.53 -12.38 15.59 5.55 0.09 -12.29 16 15 N -0.72 -15.10 5.55 -61.47 -0.34 -15.44 16 16 C 0.25 6.70 5.43 -5.19 -0.03 6.67 16 17 C -0.54 -14.70 9.28 -34.44 -0.32 -15.02 16 18 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 19 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 21 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 C 0.04 0.57 3.92 -67.71 -0.27 0.31 16 26 C -0.18 -2.48 8.64 -26.69 -0.23 -2.71 16 27 C -0.22 -2.47 8.67 -26.69 -0.23 -2.70 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.64 6.01 -51.93 -0.31 0.33 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.15 1.95 7.66 -52.49 -0.40 1.54 16 32 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 34 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 35 H 0.09 1.35 7.21 -51.93 -0.37 0.98 16 36 H 0.06 0.83 6.00 -51.93 -0.31 0.52 16 37 H 0.39 7.10 8.32 -40.82 -0.34 6.76 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.13 1.58 8.05 -51.93 -0.42 1.16 16 42 H 0.10 1.59 4.90 -51.93 -0.25 1.33 16 43 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.09 0.97 7.45 -51.93 -0.39 0.58 16 LS Contribution 378.23 15.07 5.70 5.70 Total: -1.00 -31.25 378.23 -10.71 -41.96 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -6.45 Total: 8.08 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -3.27 Total: -9.11 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: -0.34 Total: -48.05 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.09 Total: -12.29 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.41 Total: -2.17 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.25 -10.71 -41.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047257536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.156 kcal (2) G-P(sol) polarization free energy of solvation -31.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds