Wall clock time and date at job start Tue Mar 31 2020 05:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47424 * 2 1 4 4 C 1.50700 * 109.47390 * 119.99993 * 2 1 3 5 5 C 1.38240 * 120.01027 * 81.79787 * 4 2 1 6 6 C 1.38212 * 120.01306 * 180.02562 * 5 4 2 7 7 C 1.38257 * 120.03158 * 0.02562 * 6 5 4 8 8 C 1.38199 * 120.01001 * 359.97375 * 7 6 5 9 9 C 1.38331 * 120.00456 * 261.53238 * 4 2 1 10 10 Cl 1.73601 * 120.01680 * 359.97138 * 9 4 2 11 11 N 1.46906 * 109.47180 * 239.99654 * 2 1 3 12 12 C 1.46893 * 111.00102 * 166.74984 * 11 2 1 13 13 C 1.50699 * 109.47173 * 162.53502 * 12 11 2 14 14 O 1.21284 * 119.99959 * 355.01154 * 13 12 11 15 15 N 1.34775 * 120.00344 * 175.00803 * 13 12 11 16 16 C 1.46505 * 120.00253 * 180.02562 * 15 13 12 17 17 C 1.50697 * 109.47011 * 179.97438 * 16 15 13 18 18 H 1.08000 * 120.00026 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99889 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99961 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00105 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47120 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46784 * 120.00328 * 21 19 17 24 24 H 1.48494 * 109.47340 * 240.00506 * 21 19 17 25 25 C 1.46905 * 110.99698 * 42.79798 * 11 2 1 26 26 C 1.52997 * 117.49441 * 127.84532 * 25 11 2 27 27 C 1.52997 * 117.49706 * 59.18452 * 25 11 2 28 28 H 1.09004 * 109.47098 * 303.24387 * 1 2 3 29 29 H 1.09005 * 109.47168 * 63.23982 * 1 2 3 30 30 H 1.08998 * 109.47279 * 183.24203 * 1 2 3 31 31 H 1.08000 * 119.98762 * 0.02562 * 5 4 2 32 32 H 1.08002 * 119.98444 * 179.97438 * 6 5 4 33 33 H 1.08006 * 119.99854 * 179.97438 * 7 6 5 34 34 H 1.08007 * 120.00077 * 180.02562 * 8 7 6 35 35 H 1.09007 * 109.46797 * 42.54123 * 12 11 2 36 36 H 1.08994 * 109.47821 * 282.54101 * 12 11 2 37 37 H 0.97009 * 119.99833 * 359.72307 * 15 13 12 38 38 H 1.09000 * 109.46643 * 299.99586 * 16 15 13 39 39 H 1.08994 * 109.47007 * 59.99944 * 16 15 13 40 40 H 0.97001 * 120.00039 * 179.97438 * 20 19 17 41 41 H 1.08998 * 115.54745 * 273.51694 * 25 11 2 42 42 H 1.08998 * 117.50424 * 0.02562 * 26 25 11 43 43 H 1.09005 * 117.49637 * 145.02122 * 26 25 11 44 44 H 1.08996 * 117.50127 * 214.97819 * 27 25 11 45 45 H 1.08999 * 117.50147 * 0.02562 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.1019 -2.0909 1.2519 6 6 2.5621 -2.7425 2.3805 7 6 2.9528 -2.0143 3.4889 8 6 2.8838 -0.6342 3.4687 9 6 2.4293 0.0190 2.3367 10 17 2.3496 1.7530 2.3080 11 7 2.0197 -0.6926 -1.1994 12 6 3.4537 -0.4461 -1.4011 13 6 4.0122 -1.4767 -2.3482 14 8 3.3100 -2.3851 -2.7387 15 7 5.2921 -1.3889 -2.7613 16 6 5.8349 -2.3905 -3.6824 17 6 7.2749 -2.0657 -3.9858 18 1 7.7394 -1.2002 -3.5370 19 6 7.9996 -2.8743 -4.8355 20 7 7.4341 -3.9287 -5.3816 21 14 9.7844 -2.4715 -5.2122 22 1 10.1800 -1.2426 -4.4782 23 1 10.6476 -3.6019 -4.7855 24 1 9.9444 -2.2498 -6.6717 25 6 1.2464 -0.3016 -2.3857 26 6 2.0266 0.1833 -3.6092 27 6 1.2324 1.1812 -2.7626 28 1 -0.3633 0.5634 0.8595 29 1 -0.3634 0.4627 -0.9176 30 1 -0.3634 -1.0260 0.0581 31 1 1.7964 -2.6602 0.3864 32 1 2.6158 -3.8210 2.3969 33 1 3.3120 -2.5241 4.3708 34 1 3.1895 -0.0655 4.3346 35 1 3.9719 -0.5131 -0.4444 36 1 3.5956 0.5491 -1.8222 37 1 5.8526 -0.6599 -2.4521 38 1 5.7735 -3.3772 -3.2234 39 1 5.2586 -2.3834 -4.6075 40 1 7.9439 -4.4973 -5.9797 41 1 0.3364 -0.8747 -2.5636 42 1 3.1136 0.2117 -3.5342 43 1 1.6297 -0.0705 -4.5922 44 1 0.3135 1.5835 -3.1889 45 1 1.7973 1.8665 -2.1307 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000047257536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:41 Heat of formation + Delta-G solvation = 3.428726 kcal Electronic energy + Delta-G solvation = -27119.590241 eV Core-core repulsion = 23356.275690 eV Total energy + Delta-G solvation = -3763.314551 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.135 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.54631 -40.25538 -39.07854 -37.39300 -36.04370 -35.63434 -34.31407 -32.62232 -31.61940 -30.70403 -29.49153 -27.21441 -25.13093 -24.43291 -23.59498 -23.36023 -22.32325 -21.35721 -20.24215 -18.87132 -18.31042 -17.91236 -17.39692 -17.25094 -16.63804 -16.45160 -16.07238 -15.90582 -15.46643 -15.20590 -14.88828 -14.66151 -14.50233 -14.37353 -14.09308 -13.93060 -13.60661 -13.16063 -13.06223 -12.89805 -12.78947 -12.76442 -12.67404 -12.43341 -12.40997 -12.22602 -12.18699 -12.11374 -11.70889 -11.46258 -11.44941 -11.12136 -10.80361 -10.64886 -9.80709 -9.76207 -9.60697 -9.22795 -8.28866 -6.45066 0.20179 0.36328 1.16479 1.42485 1.43409 1.56802 1.85257 2.22113 2.41296 2.70064 2.85092 2.96481 3.06012 3.60057 3.79182 3.88656 3.94170 4.00236 4.02698 4.11134 4.17195 4.27611 4.31953 4.36265 4.43458 4.53981 4.70161 4.72783 4.82686 4.94443 4.97521 5.06057 5.12311 5.13387 5.16844 5.26960 5.29606 5.29837 5.45117 5.50895 5.56944 5.70667 5.86502 5.90145 5.92554 6.09011 6.66391 6.97946 7.24631 7.56795 8.83434 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.012497 B = 0.003171 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.981050 B = 8828.258231 C = 9732.934420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.124 3.876 3 H 0.066 0.934 4 C -0.080 4.080 5 C -0.091 4.091 6 C -0.126 4.126 7 C -0.107 4.107 8 C -0.117 4.117 9 C -0.042 4.042 10 Cl -0.069 7.069 11 N -0.492 5.492 12 C 0.046 3.954 13 C 0.504 3.496 14 O -0.571 6.571 15 N -0.715 5.715 16 C 0.273 3.727 17 C -0.555 4.555 18 H 0.081 0.919 19 C 0.005 3.995 20 N -0.930 5.930 21 Si 0.982 3.018 22 H -0.254 1.254 23 H -0.278 1.278 24 H -0.278 1.278 25 C 0.035 3.965 26 C -0.204 4.204 27 C -0.185 4.185 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.123 0.877 32 H 0.138 0.862 33 H 0.156 0.844 34 H 0.151 0.849 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.403 0.597 38 H -0.015 1.015 39 H -0.014 1.014 40 H 0.268 0.732 41 H 0.126 0.874 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.119 0.881 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.967 12.651 18.251 25.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.017 3.983 3 H 0.084 0.916 4 C -0.082 4.082 5 C -0.110 4.110 6 C -0.144 4.144 7 C -0.125 4.125 8 C -0.135 4.135 9 C -0.069 4.069 10 Cl -0.040 7.040 11 N -0.215 5.215 12 C -0.085 4.085 13 C 0.290 3.710 14 O -0.450 6.450 15 N -0.367 5.367 16 C 0.150 3.850 17 C -0.592 4.592 18 H 0.099 0.901 19 C -0.194 4.194 20 N -0.569 5.569 21 Si 0.805 3.195 22 H -0.178 1.178 23 H -0.204 1.204 24 H -0.204 1.204 25 C -0.073 4.073 26 C -0.241 4.241 27 C -0.224 4.224 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.141 0.859 32 H 0.156 0.844 33 H 0.174 0.826 34 H 0.169 0.831 35 H 0.123 0.877 36 H 0.099 0.901 37 H 0.238 0.762 38 H 0.003 0.997 39 H 0.004 0.996 40 H 0.077 0.923 41 H 0.144 0.856 42 H 0.096 0.904 43 H 0.111 0.889 44 H 0.137 0.863 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.520 11.497 17.937 25.233 hybrid contribution 1.322 0.713 -0.793 1.699 sum -12.198 12.210 17.144 24.326 Atomic orbital electron populations 1.21859 0.91561 1.02800 1.03266 1.20608 0.96965 0.94918 0.85790 0.91582 1.19669 1.00221 0.93863 0.94420 1.21109 0.98081 0.93458 0.98351 1.21559 0.98287 1.01362 0.93198 1.21434 0.98624 0.93162 0.99242 1.21278 0.99859 0.95112 0.97255 1.20921 1.04948 0.84477 0.96540 1.98352 1.97096 1.10109 1.98407 1.61565 1.00310 1.57389 1.02269 1.21924 0.90725 0.96438 0.99428 1.20957 0.81594 0.86759 0.81692 1.90633 1.59444 1.36576 1.58303 1.46212 1.12147 1.30294 1.48020 1.18451 0.93187 0.86514 0.86820 1.21644 0.96005 1.12521 1.29074 0.90084 1.26031 1.04092 0.94300 0.95018 1.70144 1.39136 1.16290 1.31305 0.85149 0.77507 0.78736 0.78064 1.17765 1.20406 1.20411 1.22631 0.99211 0.95293 0.90184 1.23283 0.98667 1.05512 0.96640 1.23525 1.03025 0.92822 1.02994 0.91012 0.90408 0.92307 0.85914 0.84439 0.82634 0.83141 0.87736 0.90145 0.76182 0.99716 0.99575 0.92287 0.85610 0.90433 0.88947 0.86273 0.88380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 8.74 71.98 0.63 -1.85 16 2 C 0.12 2.66 1.67 44.17 0.07 2.73 16 3 H 0.07 1.35 6.08 -2.39 -0.01 1.33 16 4 C -0.08 -1.79 3.95 -19.84 -0.08 -1.87 16 5 C -0.09 -2.21 9.32 22.26 0.21 -2.01 16 6 C -0.13 -2.55 10.04 22.27 0.22 -2.33 16 7 C -0.11 -1.76 10.05 22.26 0.22 -1.54 16 8 C -0.12 -1.98 9.83 22.29 0.22 -1.76 16 9 C -0.04 -0.83 6.31 22.32 0.14 -0.69 16 10 Cl -0.07 -1.23 27.16 -2.72 -0.07 -1.30 16 11 N -0.49 -13.25 3.34 -854.79 -2.86 -16.11 16 12 C 0.05 1.35 4.82 85.56 0.41 1.76 16 13 C 0.50 20.44 5.69 87.66 0.50 20.94 16 14 O -0.57 -28.15 15.59 -3.04 -0.05 -28.20 16 15 N -0.72 -30.91 5.55 -466.79 -2.59 -33.50 16 16 C 0.27 15.18 5.43 85.63 0.46 15.64 16 17 C -0.55 -30.50 9.28 25.60 0.24 -30.27 16 18 H 0.08 4.06 7.60 -2.91 -0.02 4.04 16 19 C 0.01 0.29 5.46 84.65 0.46 0.75 16 20 N -0.93 -56.46 13.29 21.45 0.28 -56.18 16 21 Si 0.98 42.66 29.54 68.60 2.03 44.68 16 22 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 23 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 24 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 25 C 0.04 0.91 3.92 44.91 0.18 1.08 16 26 C -0.20 -5.78 8.64 30.62 0.26 -5.51 16 27 C -0.18 -3.71 8.67 30.62 0.27 -3.44 16 28 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.08 1.26 6.01 -2.38 -0.01 1.25 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.12 3.48 7.66 -2.91 -0.02 3.46 16 32 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16 33 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 34 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 35 H 0.10 2.89 7.21 -2.38 -0.02 2.87 16 36 H 0.08 2.07 6.00 -2.39 -0.01 2.05 16 37 H 0.40 14.71 8.32 -92.70 -0.77 13.94 16 38 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 39 H -0.01 -0.86 8.14 -2.39 -0.02 -0.87 16 40 H 0.27 15.16 8.31 -92.71 -0.77 14.38 16 41 H 0.13 3.18 8.05 -2.39 -0.02 3.16 16 42 H 0.08 2.53 4.90 -2.39 -0.01 2.52 16 43 H 0.09 2.68 8.14 -2.38 -0.02 2.67 16 44 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.10 1.83 7.45 -2.39 -0.02 1.81 16 Total: -1.00 -70.56 378.23 1.40 -69.16 By element: Atomic # 1 Polarization: 29.57 SS G_CDS: 0.24 Total: 29.81 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: 4.42 Total: -8.36 kcal Atomic # 7 Polarization: -100.63 SS G_CDS: -5.16 Total: -105.79 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -0.05 Total: -28.20 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.07 Total: -1.30 kcal Total: -70.56 1.40 -69.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047257536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.587 kcal (2) G-P(sol) polarization free energy of solvation -70.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds