Wall clock time and date at job start Tue Mar 31 2020 05:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47255 * 2 1 4 4 C 1.50702 * 109.47016 * 240.00106 * 2 1 3 5 5 C 1.38237 * 120.00676 * 345.27544 * 4 2 1 6 6 C 1.38222 * 120.01070 * 179.97438 * 5 4 2 7 7 C 1.38260 * 120.02535 * 0.02562 * 6 5 4 8 8 C 1.38187 * 120.01924 * 0.22578 * 7 6 5 9 9 C 1.38335 * 120.00416 * 165.25041 * 4 2 1 10 10 Cl 1.73594 * 120.01453 * 0.04704 * 9 4 2 11 11 N 1.46901 * 109.47065 * 120.00098 * 2 1 3 12 12 C 1.46894 * 110.99897 * 288.37707 * 11 2 1 13 13 C 1.50699 * 109.47112 * 196.83365 * 12 11 2 14 14 O 1.21285 * 120.00079 * 6.14035 * 13 12 11 15 15 N 1.34774 * 120.00174 * 186.14417 * 13 12 11 16 16 C 1.46509 * 119.99798 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.46550 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00729 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99616 * 180.02562 * 17 16 15 20 20 N 1.31518 * 120.00023 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 120.00103 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47396 * 90.00123 * 21 19 17 23 23 H 1.48502 * 109.47173 * 209.99975 * 21 19 17 24 24 H 1.48502 * 109.47474 * 329.99854 * 21 19 17 25 25 C 1.46900 * 110.99909 * 52.33166 * 11 2 1 26 26 C 1.53000 * 117.49845 * 140.19503 * 25 11 2 27 27 C 1.53001 * 117.49668 * 71.53502 * 25 11 2 28 28 H 1.09002 * 109.46801 * 59.99416 * 1 2 3 29 29 H 1.08996 * 109.47349 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46668 * 299.99900 * 1 2 3 31 31 H 1.08001 * 119.99226 * 359.97438 * 5 4 2 32 32 H 1.08001 * 119.98222 * 179.97438 * 6 5 4 33 33 H 1.08010 * 119.98816 * 179.97438 * 7 6 5 34 34 H 1.08000 * 120.00996 * 179.74684 * 8 7 6 35 35 H 1.09002 * 109.47492 * 316.83309 * 12 11 2 36 36 H 1.08998 * 109.47240 * 76.83554 * 12 11 2 37 37 H 0.96998 * 120.00151 * 0.02562 * 15 13 12 38 38 H 1.08996 * 109.46809 * 299.99763 * 16 15 13 39 39 H 1.08991 * 109.47251 * 60.00257 * 16 15 13 40 40 H 0.97005 * 120.00061 * 180.02562 * 20 19 17 41 41 H 1.08998 * 115.55025 * 285.86660 * 25 11 2 42 42 H 1.08997 * 117.49797 * 359.97438 * 26 25 11 43 43 H 1.08999 * 117.49811 * 145.02263 * 26 25 11 44 44 H 1.09002 * 117.49631 * 214.97778 * 27 25 11 45 45 H 1.08998 * 117.49996 * 0.02562 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.1712 -1.4927 -1.9771 6 6 1.6317 -2.1439 -3.1060 7 6 2.9538 -2.0137 -3.4889 8 6 3.8169 -1.2361 -2.7405 9 6 3.3552 -0.5793 -1.6134 10 17 4.4373 0.4025 -0.6761 11 7 2.0197 -0.6925 1.1994 12 6 1.7875 0.1143 2.4048 13 6 2.6443 -0.4058 3.5301 14 8 3.4567 -1.2812 3.3191 15 7 2.5078 0.1019 4.7711 16 6 3.3404 -0.4042 5.8653 17 6 2.9939 0.3241 7.1383 18 1 2.2302 1.0878 7.1329 19 6 3.6526 0.0161 8.3098 20 7 3.3499 0.6513 9.4209 21 14 4.9748 -1.3032 8.3187 22 1 6.2937 -0.6843 8.0313 23 1 5.0143 -1.9554 9.6523 24 1 4.6678 -2.3190 7.2799 25 6 1.4050 -2.0205 1.3284 26 6 2.2975 -3.1690 1.8031 27 6 1.8476 -3.1026 0.3414 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 0.1384 -1.5951 -1.6781 32 1 0.9586 -2.7554 -3.6887 33 1 3.3131 -2.5231 -4.3709 34 1 4.8506 -1.1377 -3.0374 35 1 2.0460 1.1536 2.2018 36 1 0.7370 0.0500 2.6883 37 1 1.8578 0.8018 4.9401 38 1 3.1596 -1.4711 5.9958 39 1 4.3914 -0.2401 5.6279 40 1 3.8135 0.4349 10.2450 41 1 0.3632 -2.0272 1.6487 42 1 3.3408 -2.9393 2.0193 43 1 1.8427 -3.9315 2.4354 44 1 1.0970 -3.8215 0.0129 45 1 2.5952 -2.8293 -0.4032 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000047257538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:44 Heat of formation + Delta-G solvation = 26.115325 kcal Electronic energy + Delta-G solvation = -27257.379186 eV Core-core repulsion = 23495.048400 eV Total energy + Delta-G solvation = -3762.330786 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.135 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.44513 -38.96039 -37.55515 -36.35070 -34.92353 -34.14448 -32.39083 -32.11885 -30.88161 -29.19412 -28.17241 -26.05248 -24.29320 -22.68254 -22.12493 -22.02854 -21.53336 -19.93642 -19.26036 -17.65675 -17.07649 -16.37747 -16.04725 -15.65592 -15.39062 -15.23246 -15.16765 -14.63115 -14.23580 -14.02583 -13.83444 -13.74233 -13.44829 -12.88748 -12.78551 -12.67156 -12.47976 -12.27154 -12.14792 -11.79898 -11.55458 -11.51236 -11.49923 -11.09005 -11.07122 -10.94496 -10.72771 -10.63680 -10.15001 -9.94399 -9.92033 -9.46018 -9.07494 -8.99822 -8.76270 -8.74136 -8.20542 -8.01244 -6.19142 -4.20780 0.98845 1.05724 2.20462 3.28424 3.29574 3.35771 3.39870 3.44569 3.72723 4.02044 4.27035 4.35957 4.39502 4.54292 4.73540 4.90837 4.99110 5.05037 5.14471 5.15602 5.16401 5.22690 5.29744 5.32918 5.42901 5.48429 5.57433 5.58142 5.66023 5.71851 5.74850 5.85565 5.91861 6.05282 6.19785 6.23162 6.32184 6.57951 6.68812 6.83109 6.99606 7.13500 7.18858 7.34204 7.47252 8.20591 8.60306 8.79890 9.10081 9.42087 10.92917 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.019665 B = 0.002941 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.522299 B = 9518.984171 C = 9706.628729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.121 3.879 3 H 0.095 0.905 4 C -0.056 4.056 5 C -0.098 4.098 6 C -0.122 4.122 7 C -0.111 4.111 8 C -0.118 4.118 9 C -0.015 4.015 10 Cl -0.053 7.053 11 N -0.474 5.474 12 C 0.041 3.959 13 C 0.502 3.498 14 O -0.530 6.530 15 N -0.712 5.712 16 C 0.225 3.775 17 C -0.542 4.542 18 H 0.078 0.922 19 C 0.077 3.923 20 N -0.894 5.894 21 Si 0.877 3.123 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.260 1.260 25 C 0.004 3.996 26 C -0.144 4.144 27 C -0.173 4.173 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.131 0.869 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.098 0.902 36 H 0.060 0.940 37 H 0.393 0.607 38 H 0.023 0.977 39 H 0.019 0.981 40 H 0.267 0.733 41 H 0.080 0.920 42 H 0.121 0.879 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.385 -3.321 -27.290 28.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.013 3.987 3 H 0.113 0.887 4 C -0.057 4.057 5 C -0.116 4.116 6 C -0.141 4.141 7 C -0.130 4.130 8 C -0.136 4.136 9 C -0.042 4.042 10 Cl -0.024 7.024 11 N -0.197 5.197 12 C -0.090 4.090 13 C 0.286 3.714 14 O -0.406 6.406 15 N -0.362 5.362 16 C 0.103 3.897 17 C -0.580 4.580 18 H 0.096 0.904 19 C -0.127 4.127 20 N -0.532 5.532 21 Si 0.704 3.296 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.185 1.185 25 C -0.104 4.104 26 C -0.182 4.182 27 C -0.210 4.210 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.149 0.851 32 H 0.142 0.858 33 H 0.145 0.855 34 H 0.148 0.852 35 H 0.116 0.884 36 H 0.078 0.922 37 H 0.226 0.774 38 H 0.041 0.959 39 H 0.036 0.964 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.139 0.861 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.126 -3.910 -27.159 27.913 hybrid contribution -0.459 -0.017 0.502 0.681 sum -5.585 -3.927 -26.657 27.517 Atomic orbital electron populations 1.22570 0.96687 1.02701 1.02603 1.20606 0.92895 0.97448 0.87736 0.88705 1.19530 0.91880 0.98114 0.96168 1.21104 0.99939 0.95962 0.94623 1.21165 0.95891 0.99881 0.97117 1.21070 0.93563 0.98620 0.99711 1.21058 1.00539 0.97684 0.94345 1.20827 0.91165 0.97955 0.94250 1.98402 1.63280 1.68388 1.72347 1.61532 1.56969 1.01052 1.00109 1.21964 0.98518 0.98207 0.90353 1.20261 0.84521 0.83183 0.83469 1.90590 1.36407 1.30528 1.83103 1.46152 1.41072 1.40520 1.08475 1.19406 0.90446 0.95135 0.84747 1.21118 1.23196 1.22275 0.91373 0.90361 1.24803 0.96699 0.96032 0.95154 1.69887 1.42003 1.41489 0.99782 0.86811 0.82382 0.82630 0.77822 1.19895 1.20997 1.18479 1.22214 0.95555 0.86081 1.06560 1.23159 1.02578 0.97653 0.94777 1.23127 1.03560 1.00110 0.94235 0.91803 0.91515 0.91930 0.85130 0.85778 0.85539 0.85237 0.88386 0.92242 0.77389 0.95932 0.96358 0.92325 0.90233 0.86056 0.89930 0.89750 0.88422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.55 7.38 37.16 0.27 -1.28 16 2 C 0.12 1.27 1.86 -68.86 -0.13 1.14 16 3 H 0.10 1.01 7.27 -51.93 -0.38 0.63 16 4 C -0.06 -0.57 3.23 -104.59 -0.34 -0.91 16 5 C -0.10 -0.83 7.00 -39.59 -0.28 -1.11 16 6 C -0.12 -0.93 10.05 -39.58 -0.40 -1.32 16 7 C -0.11 -0.87 10.04 -39.59 -0.40 -1.27 16 8 C -0.12 -1.12 9.83 -39.55 -0.39 -1.51 16 9 C -0.01 -0.16 5.94 -39.49 -0.23 -0.40 16 10 Cl -0.05 -0.68 27.55 -51.86 -1.43 -2.11 16 11 N -0.47 -6.16 4.05 -221.53 -0.90 -7.06 16 12 C 0.04 0.55 4.92 -4.98 -0.02 0.53 16 13 C 0.50 9.35 7.59 -10.99 -0.08 9.27 16 14 O -0.53 -11.57 13.02 5.55 0.07 -11.50 16 15 N -0.71 -14.32 5.55 -61.47 -0.34 -14.66 16 16 C 0.22 5.55 4.50 -5.19 -0.02 5.53 16 17 C -0.54 -14.94 9.83 -34.44 -0.34 -15.28 16 18 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 19 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 20 N -0.89 -26.75 13.96 55.43 0.77 -25.97 16 21 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 22 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 25 C 0.00 0.06 3.26 -67.71 -0.22 -0.17 16 26 C -0.14 -2.15 9.10 -26.69 -0.24 -2.39 16 27 C -0.17 -2.07 8.02 -26.69 -0.21 -2.28 16 28 H 0.06 0.45 8.11 -51.93 -0.42 0.03 16 29 H 0.07 0.55 5.39 -51.93 -0.28 0.27 16 30 H 0.06 0.51 7.15 -51.93 -0.37 0.14 16 31 H 0.13 0.94 5.96 -52.49 -0.31 0.63 16 32 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 33 H 0.13 0.71 8.06 -52.48 -0.42 0.28 16 34 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 35 H 0.10 1.18 7.77 -51.93 -0.40 0.78 16 36 H 0.06 0.70 7.35 -51.93 -0.38 0.32 16 37 H 0.39 6.98 8.32 -40.82 -0.34 6.64 16 38 H 0.02 0.59 7.20 -51.93 -0.37 0.22 16 39 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 40 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.08 0.97 7.38 -51.93 -0.38 0.59 16 42 H 0.12 2.22 6.34 -51.93 -0.33 1.89 16 43 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.10 1.27 5.89 -51.93 -0.31 0.96 16 LS Contribution 368.65 15.07 5.56 5.56 Total: -1.00 -31.92 368.65 -10.43 -42.35 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -6.36 Total: 5.71 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -3.13 Total: -9.36 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: -0.46 Total: -47.70 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.07 Total: -11.50 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.43 Total: -2.11 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.92 -10.43 -42.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047257538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.462 kcal (2) G-P(sol) polarization free energy of solvation -31.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds