Wall clock time and date at job start Tue Mar 31 2020 06:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46499 * 120.00023 * 2 1 4 4 C 1.50698 * 109.47103 * 269.99598 * 3 2 1 5 5 H 1.07993 * 120.00028 * 0.02562 * 4 3 2 6 6 C 1.37886 * 119.99556 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00246 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99625 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47260 * 0.02562 * 8 6 4 10 10 H 1.48494 * 109.47384 * 120.00190 * 8 6 4 11 11 H 1.48501 * 109.47183 * 240.00221 * 8 6 4 12 12 C 1.39672 * 119.99828 * 179.97438 * 2 1 3 13 13 C 1.38909 * 120.07637 * 0.02562 * 12 2 1 14 14 C 1.38106 * 119.92684 * 179.97438 * 13 12 2 15 15 C 1.38286 * 120.07475 * 359.97438 * 14 13 12 16 16 C 1.50697 * 119.92804 * 180.02562 * 15 14 13 17 17 H 1.09006 * 109.19928 * 270.41150 * 16 15 14 18 18 N 1.46796 * 109.33803 * 150.82404 * 16 15 14 19 19 C 1.39016 * 118.53134 * 284.12205 * 18 16 15 20 20 C 1.38413 * 121.99040 * 150.15815 * 19 18 16 21 21 C 1.38185 * 119.65352 * 180.44748 * 20 19 18 22 22 C 1.38613 * 120.55557 * 359.97438 * 21 20 19 23 23 C 1.37953 * 120.52291 * 359.93368 * 22 21 20 24 24 C 1.39252 * 119.52403 * 359.97438 * 23 22 21 25 25 C 1.47414 * 121.77178 * 180.35656 * 24 23 22 26 26 O 1.21599 * 120.38258 * 13.68156 * 25 24 23 27 27 N 1.34928 * 119.23161 * 193.69375 * 25 24 23 28 28 C 1.38291 * 120.14860 * 0.27730 * 15 14 13 29 29 C 1.38109 * 120.07312 * 359.45262 * 28 15 14 30 30 H 1.08997 * 109.47530 * 269.99714 * 1 2 3 31 31 H 1.09005 * 109.47094 * 30.00236 * 1 2 3 32 32 H 1.09002 * 109.47437 * 149.99428 * 1 2 3 33 33 H 1.08997 * 109.47329 * 30.00396 * 3 2 1 34 34 H 1.09002 * 109.46656 * 150.00069 * 3 2 1 35 35 H 0.96997 * 119.99739 * 179.97438 * 7 6 4 36 36 H 1.07996 * 120.03546 * 359.94871 * 13 12 2 37 37 H 1.08000 * 119.96440 * 179.97438 * 14 13 12 38 38 H 0.97001 * 120.73804 * 104.12546 * 18 16 15 39 39 H 1.08003 * 120.17557 * 0.47062 * 20 19 18 40 40 H 1.07999 * 119.72148 * 179.70712 * 21 20 19 41 41 H 1.08003 * 119.73881 * 179.90316 * 22 21 20 42 42 H 1.08008 * 120.23837 * 180.02562 * 23 22 21 43 43 H 0.96997 * 119.39757 * 183.69237 * 27 25 24 44 44 H 1.07994 * 119.96210 * 179.69950 * 28 15 14 45 45 H 1.08001 * 120.03582 * 180.27529 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2416 6 6 3.1261 2.8780 -1.6727 7 7 3.5533 3.6181 -0.6730 8 14 3.4369 3.4175 -3.4338 9 1 2.8590 2.4175 -4.3672 10 1 2.7990 4.7380 -3.6669 11 1 4.8994 3.5262 -3.6674 12 6 2.1633 -1.2096 0.0005 13 6 1.4703 -2.4135 0.0005 14 6 2.1639 -3.6078 0.0005 15 6 3.5468 -3.6060 0.0000 16 6 4.3003 -4.9111 -0.0006 17 1 4.4735 -5.2254 1.0287 18 7 5.5904 -4.7272 -0.6763 19 6 5.6076 -4.6459 -2.0640 20 6 6.5632 -3.9106 -2.7437 21 6 6.5292 -3.8555 -4.1240 22 6 5.5473 -4.5304 -4.8322 23 6 4.5886 -5.2692 -4.1703 24 6 4.6121 -5.3349 -2.7795 25 6 3.6170 -6.1157 -2.0224 26 8 2.9028 -6.9185 -2.5916 27 7 3.5077 -5.9290 -0.6905 28 6 4.2398 -2.4093 0.0053 29 6 3.5524 -1.2114 -0.0004 30 1 -0.3634 -0.0001 1.0276 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3634 -0.8899 -0.5139 33 1 1.6085 2.0284 0.5139 34 1 3.1499 1.1383 0.5138 35 1 4.0301 4.4440 -0.8503 36 1 0.3903 -2.4156 0.0010 37 1 1.6257 -4.5441 0.0010 38 1 6.4129 -4.6638 -0.1659 39 1 7.3316 -3.3830 -2.1981 40 1 7.2715 -3.2783 -4.6553 41 1 5.5322 -4.4770 -5.9108 42 1 3.8258 -5.7937 -4.7267 43 1 2.8920 -6.4792 -0.1816 44 1 5.3197 -2.4114 0.0097 45 1 4.0943 -0.2772 -0.0008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048300782.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:38 Heat of formation + Delta-G solvation = 43.720909 kcal Electronic energy + Delta-G solvation = -28774.582513 eV Core-core repulsion = 24950.022101 eV Total energy + Delta-G solvation = -3824.560412 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.87259 -38.99525 -38.11087 -37.04756 -35.19230 -33.24452 -32.74208 -31.05983 -30.55991 -30.31091 -28.76037 -27.83336 -25.73138 -24.24593 -24.12288 -22.56142 -22.21897 -21.45003 -20.13416 -19.23691 -18.02717 -17.69837 -17.04564 -16.55975 -16.23765 -15.64117 -15.26742 -15.05160 -14.86981 -14.52382 -14.28095 -14.06119 -13.87549 -13.78805 -13.70695 -13.32691 -13.01936 -12.79765 -12.65373 -12.21180 -11.95236 -11.80080 -11.59619 -11.41042 -11.31206 -11.24803 -10.95418 -10.75269 -10.35039 -10.25743 -10.01266 -9.92959 -9.80402 -9.31632 -8.96870 -8.92390 -8.55726 -8.37395 -7.75378 -6.56737 -6.08323 -4.22417 0.94372 1.48332 2.01726 2.02747 2.83684 3.16015 3.22229 3.28677 3.30634 3.36317 3.90535 4.06112 4.36134 4.39616 4.56163 4.80097 4.98158 5.04080 5.08266 5.16906 5.33368 5.36018 5.41304 5.47951 5.52660 5.74908 5.92573 5.93011 6.00775 6.08406 6.17460 6.21687 6.25334 6.33568 6.49975 6.52653 6.58372 6.75821 6.82682 6.92315 6.96125 6.99950 7.13688 7.25026 7.32920 7.47224 7.49683 7.76248 8.09278 8.18200 8.22963 8.38897 8.86801 9.44834 10.90629 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.010842 B = 0.003874 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.887422 B = 7226.690163 C = 8637.395812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.612 5.612 3 C 0.248 3.752 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.895 5.895 8 Si 0.895 3.105 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.249 3.751 13 C -0.223 4.223 14 C -0.049 4.049 15 C -0.221 4.221 16 C 0.438 3.562 17 H 0.105 0.895 18 N -0.747 5.747 19 C 0.245 3.755 20 C -0.183 4.183 21 C -0.053 4.053 22 C -0.176 4.176 23 C -0.023 4.023 24 C -0.200 4.200 25 C 0.580 3.420 26 O -0.547 6.547 27 N -0.732 5.732 28 C -0.043 4.043 29 C -0.190 4.190 30 H 0.037 0.963 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.031 0.969 34 H 0.036 0.964 35 H 0.264 0.736 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.411 0.589 39 H 0.128 0.872 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.131 0.869 43 H 0.405 0.595 44 H 0.112 0.888 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.667 -16.210 1.478 16.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.317 5.317 3 C 0.128 3.872 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.141 3.859 13 C -0.246 4.246 14 C -0.069 4.069 15 C -0.227 4.227 16 C 0.247 3.753 17 H 0.123 0.877 18 N -0.382 5.382 19 C 0.142 3.858 20 C -0.205 4.205 21 C -0.072 4.072 22 C -0.196 4.196 23 C -0.042 4.042 24 C -0.207 4.207 25 C 0.369 3.631 26 O -0.425 6.425 27 N -0.387 5.387 28 C -0.063 4.063 29 C -0.212 4.212 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.132 0.868 37 H 0.126 0.874 38 H 0.248 0.752 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.149 0.851 43 H 0.242 0.758 44 H 0.130 0.870 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.231 -16.139 1.194 16.727 hybrid contribution 0.219 0.542 -0.556 0.807 sum 4.449 -15.597 0.638 16.232 Atomic orbital electron populations 1.21501 0.81371 1.02072 0.99795 1.47162 1.04513 1.04672 1.75312 1.19315 0.92067 0.78679 0.97103 1.21599 1.36399 1.06426 0.92583 0.92218 1.24948 0.95359 0.96234 0.97416 1.69934 1.38359 1.14357 1.30716 0.86480 0.78087 0.78506 0.84675 1.19680 1.20912 1.20783 1.18009 0.91571 0.86019 0.90340 1.20543 0.99126 0.91303 1.13650 1.20381 0.92967 0.96722 0.96804 1.19914 0.93941 0.94125 1.14687 1.19132 0.78734 0.85614 0.91785 0.87730 1.44636 1.08481 1.81785 1.03255 1.17770 0.93873 0.90440 0.83738 1.20641 1.02470 1.02724 0.94665 1.21154 0.96851 0.95699 0.93507 1.20951 0.96965 1.01583 1.00088 1.20958 0.96610 0.94534 0.92146 1.19565 1.00976 1.05771 0.94357 1.18012 0.81921 0.81466 0.81666 1.90783 1.45381 1.37318 1.69027 1.46331 1.44764 1.39379 1.08194 1.20478 0.98650 0.91041 0.96127 1.20869 0.92638 0.98746 1.08957 0.94449 0.91327 0.92625 0.95114 0.94592 0.92674 0.86756 0.87409 0.75167 0.85378 0.85633 0.85754 0.85109 0.75773 0.87007 0.84960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.67 10.19 59.84 0.61 2.28 16 2 N -0.61 -12.78 2.99 -181.01 -0.54 -13.32 16 3 C 0.25 6.07 4.91 -5.20 -0.03 6.05 16 4 C -0.53 -14.29 9.39 -34.44 -0.32 -14.61 16 5 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 6 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 7 N -0.89 -25.17 13.29 55.43 0.74 -24.43 16 8 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 9 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 C 0.25 4.87 6.55 -83.79 -0.55 4.32 16 13 C -0.22 -3.78 9.21 -39.38 -0.36 -4.15 16 14 C -0.05 -0.73 9.31 -39.61 -0.37 -1.10 16 15 C -0.22 -3.09 5.46 -104.59 -0.57 -3.66 16 16 C 0.44 4.64 4.27 -128.68 -0.55 4.10 16 17 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 18 N -0.75 -7.51 4.38 -56.08 -0.25 -7.76 16 19 C 0.24 3.05 6.23 -83.64 -0.52 2.53 16 20 C -0.18 -2.09 10.02 -39.54 -0.40 -2.49 16 21 C -0.05 -0.59 10.03 -39.46 -0.40 -0.99 16 22 C -0.18 -2.07 10.02 -39.55 -0.40 -2.46 16 23 C -0.02 -0.31 9.66 -39.31 -0.38 -0.69 16 24 C -0.20 -2.87 5.83 -104.88 -0.61 -3.49 16 25 C 0.58 8.71 7.88 -12.46 -0.10 8.61 16 26 O -0.55 -9.73 17.45 5.28 0.09 -9.64 16 27 N -0.73 -8.53 4.15 -59.06 -0.24 -8.78 16 28 C -0.04 -0.68 9.25 -39.61 -0.37 -1.04 16 29 C -0.19 -3.65 9.21 -39.38 -0.36 -4.01 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 32 H 0.06 0.86 6.20 -51.93 -0.32 0.54 16 33 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 34 H 0.04 0.93 6.20 -51.93 -0.32 0.60 16 35 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.11 1.78 6.14 -52.49 -0.32 1.46 16 37 H 0.11 1.39 7.33 -52.49 -0.38 1.01 16 38 H 0.41 2.96 8.96 -40.82 -0.37 2.59 16 39 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 40 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 42 H 0.13 1.72 7.84 -52.48 -0.41 1.31 16 43 H 0.41 3.92 8.84 -40.82 -0.36 3.56 16 44 H 0.11 1.52 7.37 -52.49 -0.39 1.14 16 45 H 0.13 2.83 6.14 -52.49 -0.32 2.51 16 LS Contribution 373.73 15.07 5.63 5.63 Total: -1.00 -32.22 373.73 -11.05 -43.27 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -5.70 Total: 8.14 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -5.76 Total: -9.19 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: -0.30 Total: -54.29 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.22 -11.05 -43.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048300782.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.990 kcal (2) G-P(sol) polarization free energy of solvation -32.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds