Wall clock time and date at job start Tue Mar 31 2020 06:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00184 * 2 1 4 4 C 1.50705 * 109.46994 * 269.99731 * 3 2 1 5 5 H 1.07998 * 120.00121 * 0.02562 * 4 3 2 6 6 C 1.37872 * 119.99774 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00535 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00014 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.46821 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47241 * 119.99873 * 8 6 4 11 11 H 1.48491 * 109.47640 * 240.00475 * 8 6 4 12 12 C 1.39678 * 120.00138 * 179.97438 * 2 1 3 13 13 C 1.38915 * 120.06984 * 0.02562 * 12 2 1 14 14 C 1.38104 * 119.92359 * 179.97438 * 13 12 2 15 15 C 1.38288 * 120.07208 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.92272 * 180.02562 * 15 14 13 17 17 H 1.09003 * 109.33214 * 270.33376 * 16 15 14 18 18 N 1.46801 * 109.33615 * 30.00127 * 16 15 14 19 19 C 1.39021 * 118.51855 * 75.88957 * 18 16 15 20 20 C 1.38407 * 121.98642 * 209.86826 * 19 18 16 21 21 C 1.38186 * 119.65022 * 179.82380 * 20 19 18 22 22 C 1.38613 * 120.55543 * 0.02562 * 21 20 19 23 23 C 1.37957 * 120.52429 * 0.06192 * 22 21 20 24 24 C 1.39250 * 119.52460 * 0.02562 * 23 22 21 25 25 C 1.47411 * 121.77633 * 179.79928 * 24 23 22 26 26 O 1.21605 * 120.36866 * 346.44431 * 25 24 23 27 27 N 1.34915 * 119.25783 * 166.46701 * 25 24 23 28 28 C 1.38290 * 120.15288 * 0.02562 * 15 14 13 29 29 C 1.38100 * 120.07105 * 359.97438 * 28 15 14 30 30 H 1.09001 * 109.47288 * 270.00009 * 1 2 3 31 31 H 1.08994 * 109.46748 * 30.00133 * 1 2 3 32 32 H 1.09004 * 109.46919 * 150.00058 * 1 2 3 33 33 H 1.08995 * 109.47144 * 29.99687 * 3 2 1 34 34 H 1.09000 * 109.47505 * 149.99538 * 3 2 1 35 35 H 0.96999 * 120.00805 * 179.97438 * 7 6 4 36 36 H 1.07998 * 120.03739 * 359.69591 * 13 12 2 37 37 H 1.08001 * 119.96576 * 179.97438 * 14 13 12 38 38 H 0.96995 * 120.74169 * 255.91054 * 18 16 15 39 39 H 1.07995 * 120.17981 * 359.81044 * 20 19 18 40 40 H 1.07997 * 119.72273 * 180.02562 * 21 20 19 41 41 H 1.07998 * 119.73601 * 180.02562 * 22 21 20 42 42 H 1.08001 * 120.24327 * 179.97438 * 23 22 21 43 43 H 0.97002 * 119.38897 * 176.33203 * 27 25 24 44 44 H 1.07997 * 119.96313 * 180.02562 * 28 15 14 45 45 H 1.08007 * 120.03349 * 179.97438 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4209 5 1 2.0975 1.0961 -2.2417 6 6 3.1261 2.8778 -1.6728 7 7 3.5534 3.6180 -0.6732 8 14 3.4382 3.4167 -3.4339 9 1 2.8611 2.4161 -4.3673 10 1 2.8001 4.7371 -3.6681 11 1 4.9007 3.5254 -3.6666 12 6 2.1634 -1.2096 0.0005 13 6 1.4703 -2.4135 0.0005 14 6 2.1639 -3.6078 0.0005 15 6 3.5468 -3.6059 0.0000 16 6 4.3003 -4.9111 -0.0006 17 1 4.4759 -5.2268 1.0278 18 7 3.5041 -5.9317 -0.6931 19 6 3.4423 -5.8960 -2.0815 20 6 2.3360 -6.3505 -2.7780 21 6 2.3246 -6.2890 -4.1585 22 6 3.4113 -5.7770 -4.8500 23 6 4.5225 -5.3215 -4.1711 24 6 4.5482 -5.3792 -2.7800 25 6 5.7112 -4.9106 -2.0049 26 8 6.7708 -4.6897 -2.5592 27 7 5.5870 -4.7299 -0.6737 28 6 4.2399 -2.4092 0.0000 29 6 3.5525 -1.2115 0.0000 30 1 -0.3634 0.0000 1.0277 31 1 -0.3632 0.8899 -0.5138 32 1 -0.3633 -0.8900 -0.5138 33 1 1.6085 2.0283 0.5138 34 1 3.1499 1.1384 0.5139 35 1 4.0303 4.4439 -0.8504 36 1 0.3904 -2.4156 0.0051 37 1 1.6258 -4.5441 0.0010 38 1 3.0315 -6.6154 -0.1932 39 1 1.4861 -6.7512 -2.2456 40 1 1.4618 -6.6429 -4.7031 41 1 3.3881 -5.7348 -5.9289 42 1 5.3669 -4.9238 -4.7145 43 1 6.3645 -4.4733 -0.1536 44 1 5.3198 -2.4114 -0.0008 45 1 4.0944 -0.2772 0.0004 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048300783.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:41 Heat of formation + Delta-G solvation = 44.146741 kcal Electronic energy + Delta-G solvation = -28719.202985 eV Core-core repulsion = 24894.661038 eV Total energy + Delta-G solvation = -3824.541947 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.87846 -38.99906 -38.11633 -37.05136 -35.19484 -33.26178 -32.70637 -31.09617 -30.62182 -30.26978 -28.77124 -27.84848 -25.70550 -24.29490 -24.12823 -22.61846 -22.08750 -21.57094 -20.10075 -19.25828 -18.05144 -17.70218 -17.04968 -16.53439 -16.26223 -15.63006 -15.25353 -15.08501 -14.88026 -14.45505 -14.35871 -14.11328 -13.86753 -13.79131 -13.68036 -13.35685 -13.02975 -12.79046 -12.68579 -12.19928 -11.96892 -11.83331 -11.60238 -11.42811 -11.30223 -11.26211 -10.94845 -10.73640 -10.34006 -10.26789 -9.98626 -9.93415 -9.79345 -9.28908 -9.01283 -8.92093 -8.53735 -8.37483 -7.79793 -6.56258 -6.06830 -4.20701 0.90860 1.43354 2.00986 2.03315 2.83462 3.15420 3.24858 3.28743 3.33443 3.38428 3.87354 4.06216 4.37197 4.40414 4.54854 4.75046 4.96374 4.99965 5.08665 5.18963 5.27639 5.32345 5.37494 5.47031 5.49946 5.73712 5.87543 5.92543 5.99854 6.04549 6.16606 6.19064 6.23769 6.33114 6.44665 6.52882 6.55132 6.77513 6.82517 6.92399 6.93557 7.00160 7.14574 7.26295 7.33074 7.46380 7.47952 7.77840 8.10438 8.18723 8.25901 8.39115 8.88218 9.46745 10.92564 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.011126 B = 0.003562 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.086147 B = 7859.819048 C = 8471.933643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.612 5.612 3 C 0.248 3.752 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.894 5.894 8 Si 0.895 3.105 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.249 3.751 13 C -0.224 4.224 14 C -0.043 4.043 15 C -0.221 4.221 16 C 0.438 3.562 17 H 0.105 0.895 18 N -0.747 5.747 19 C 0.244 3.756 20 C -0.186 4.186 21 C -0.056 4.056 22 C -0.176 4.176 23 C -0.022 4.022 24 C -0.196 4.196 25 C 0.578 3.422 26 O -0.543 6.543 27 N -0.732 5.732 28 C -0.049 4.049 29 C -0.188 4.188 30 H 0.037 0.963 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.031 0.969 34 H 0.036 0.964 35 H 0.264 0.736 36 H 0.114 0.886 37 H 0.109 0.891 38 H 0.410 0.590 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.132 0.868 43 H 0.407 0.593 44 H 0.110 0.890 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.737 -21.072 1.406 21.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.316 5.316 3 C 0.128 3.872 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.533 5.533 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.207 1.207 12 C 0.141 3.859 13 C -0.247 4.247 14 C -0.062 4.062 15 C -0.227 4.227 16 C 0.247 3.753 17 H 0.123 0.877 18 N -0.382 5.382 19 C 0.141 3.859 20 C -0.208 4.208 21 C -0.075 4.075 22 C -0.196 4.196 23 C -0.041 4.041 24 C -0.203 4.203 25 C 0.367 3.633 26 O -0.421 6.421 27 N -0.387 5.387 28 C -0.069 4.069 29 C -0.211 4.211 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.132 0.868 37 H 0.127 0.873 38 H 0.247 0.753 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.150 0.850 43 H 0.244 0.756 44 H 0.129 0.871 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.265 -20.481 1.129 20.771 hybrid contribution 0.135 0.478 -0.561 0.749 sum -3.130 -20.004 0.568 20.255 Atomic orbital electron populations 1.21496 0.81376 1.02045 0.99766 1.47168 1.04503 1.04686 1.75291 1.19319 0.92080 0.78663 0.97119 1.21591 1.36502 1.06442 0.92567 0.92222 1.24946 0.95310 0.96246 0.97442 1.69929 1.38304 1.14365 1.30737 0.86480 0.78172 0.78458 0.84639 1.19689 1.20899 1.20744 1.18011 0.91516 0.86073 0.90323 1.20541 0.99047 0.91321 1.13841 1.20327 0.92756 0.96608 0.96556 1.19908 0.94137 0.93905 1.14730 1.19150 0.78527 0.85798 0.91784 0.87734 1.44648 1.56324 1.34107 1.03110 1.17774 0.91428 0.92907 0.83776 1.20591 0.97059 1.08667 0.94483 1.21123 0.97623 0.95157 0.93561 1.20954 0.94407 1.04137 1.00094 1.21001 0.97658 0.93339 0.92099 1.19609 0.94560 1.11775 0.94381 1.18001 0.87716 0.75808 0.81725 1.90799 1.29640 1.51847 1.69828 1.46324 1.12521 1.71626 1.08216 1.20531 0.98714 0.91311 0.96345 1.20868 0.92694 0.98747 1.08779 0.94475 0.91335 0.92643 0.95101 0.94589 0.92651 0.86786 0.87254 0.75275 0.85560 0.85749 0.85738 0.84981 0.75595 0.87149 0.84937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.65 10.19 59.85 0.61 2.26 16 2 N -0.61 -12.78 2.99 -181.00 -0.54 -13.33 16 3 C 0.25 6.13 4.91 -5.19 -0.03 6.11 16 4 C -0.53 -14.51 9.39 -34.44 -0.32 -14.84 16 5 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16 8 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 9 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 12 C 0.25 4.88 6.55 -83.78 -0.55 4.33 16 13 C -0.22 -3.68 9.20 -39.38 -0.36 -4.04 16 14 C -0.04 -0.60 9.27 -39.61 -0.37 -0.97 16 15 C -0.22 -3.09 5.46 -104.58 -0.57 -3.66 16 16 C 0.44 4.64 4.27 -128.64 -0.55 4.09 16 17 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 18 N -0.75 -7.02 4.40 -56.06 -0.25 -7.27 16 19 C 0.24 2.88 6.24 -83.63 -0.52 2.35 16 20 C -0.19 -1.88 10.02 -39.54 -0.40 -2.28 16 21 C -0.06 -0.55 10.03 -39.46 -0.40 -0.95 16 22 C -0.18 -1.96 10.02 -39.55 -0.40 -2.35 16 23 C -0.02 -0.29 9.66 -39.31 -0.38 -0.67 16 24 C -0.20 -2.81 5.83 -104.88 -0.61 -3.43 16 25 C 0.58 9.02 7.88 -12.46 -0.10 8.92 16 26 O -0.54 -10.16 17.44 5.27 0.09 -10.07 16 27 N -0.73 -8.99 4.13 -59.03 -0.24 -9.24 16 28 C -0.05 -0.81 9.31 -39.61 -0.37 -1.18 16 29 C -0.19 -3.73 9.21 -39.38 -0.36 -4.09 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 32 H 0.05 0.83 6.20 -51.93 -0.32 0.51 16 33 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 34 H 0.04 0.94 6.20 -51.93 -0.32 0.62 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 36 H 0.11 1.69 6.15 -52.49 -0.32 1.36 16 37 H 0.11 1.24 7.39 -52.49 -0.39 0.86 16 38 H 0.41 2.58 8.96 -40.82 -0.37 2.22 16 39 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 40 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 42 H 0.13 1.78 7.84 -52.49 -0.41 1.37 16 43 H 0.41 4.33 8.84 -40.82 -0.36 3.97 16 44 H 0.11 1.68 7.31 -52.49 -0.38 1.30 16 45 H 0.13 2.94 6.14 -52.48 -0.32 2.62 16 LS Contribution 373.74 15.07 5.63 5.63 Total: -1.00 -32.83 373.74 -11.05 -43.89 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -5.70 Total: 7.45 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -5.77 Total: -8.75 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: -0.30 Total: -54.68 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.83 -11.05 -43.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048300783.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.034 kcal (2) G-P(sol) polarization free energy of solvation -32.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds