Wall clock time and date at job start Tue Mar 31 2020 05:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34191 * 125.36930 * 2 1 4 4 C 1.47203 * 106.61109 * 179.97438 * 3 2 1 5 5 C 1.41685 * 127.01551 * 180.02562 * 4 3 2 6 6 C 1.38386 * 119.99563 * 0.02562 * 5 4 3 7 7 N 1.36371 * 127.25317 * 0.02562 * 6 5 4 8 8 C 1.30440 * 109.08542 * 180.02562 * 7 6 5 9 9 C 1.47660 * 124.25820 * 180.26889 * 8 7 6 10 10 C 1.39664 * 120.15443 * 359.44407 * 9 8 7 11 11 C 1.37940 * 119.84345 * 179.74222 * 10 9 8 12 12 C 1.38379 * 120.15038 * 0.53837 * 11 10 9 13 13 C 1.38380 * 120.31071 * 359.71615 * 12 11 10 14 14 C 1.37922 * 120.15433 * 0.02685 * 13 12 11 15 15 O 1.34706 * 111.48072 * 0.02562 * 8 7 6 16 16 C 1.35033 * 108.65372 * 359.97438 * 15 8 7 17 17 O 1.21738 * 127.35868 * 180.02562 * 16 15 8 18 18 C 1.38505 * 105.97166 * 0.26364 * 4 3 2 19 19 C 1.50701 * 126.01902 * 179.73809 * 18 4 3 20 20 N 1.35707 * 107.96090 * 359.57469 * 18 4 3 21 21 C 1.37153 * 124.90206 * 180.12906 * 20 18 4 22 22 H 1.08004 * 120.00208 * 219.49387 * 21 20 18 23 23 C 1.39065 * 120.00173 * 39.49563 * 21 20 18 24 24 N 1.31261 * 120.00000 * 20.72299 * 23 21 20 25 25 Si 1.86801 * 120.00234 * 200.72244 * 23 21 20 26 26 H 1.48504 * 109.46911 * 60.00141 * 25 23 21 27 27 H 1.48497 * 109.47297 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.46964 * 300.00116 * 25 23 21 29 29 H 1.08997 * 109.47078 * 92.06329 * 1 2 3 30 30 H 1.09003 * 109.46991 * 212.06532 * 1 2 3 31 31 H 1.08997 * 109.47099 * 332.05873 * 1 2 3 32 32 H 1.08000 * 126.69623 * 0.02562 * 3 2 1 33 33 H 1.07999 * 120.00495 * 180.02562 * 5 4 3 34 34 H 1.07998 * 120.07846 * 359.97438 * 10 9 8 35 35 H 1.08000 * 119.91845 * 180.23886 * 11 10 9 36 36 H 1.08002 * 119.84017 * 179.70064 * 12 11 10 37 37 H 1.07997 * 119.91777 * 180.02562 * 13 12 11 38 38 H 1.07999 * 120.07737 * 180.02562 * 14 13 12 39 39 H 1.08996 * 109.47529 * 90.02696 * 19 18 4 40 40 H 1.09010 * 109.46877 * 210.02364 * 19 18 4 41 41 H 1.08999 * 109.47297 * 330.01702 * 19 18 4 42 42 H 0.96992 * 120.00013 * 174.94223 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2837 1.0942 0.0000 4 6 3.6776 0.6209 0.0006 5 6 4.8490 1.4178 0.0014 6 6 4.7470 2.7979 0.0021 7 7 3.6035 3.5411 0.0027 8 6 3.9177 4.8071 0.0027 9 6 2.9334 5.9077 0.0090 10 6 1.5656 5.6258 0.0037 11 6 0.6517 6.6589 0.0150 12 6 1.0874 7.9723 0.0203 13 6 2.4412 8.2590 0.0202 14 6 3.3661 7.2358 0.0143 15 8 5.2531 4.9839 0.0016 16 6 5.8492 3.7723 0.0013 17 8 7.0436 3.5366 0.0009 18 6 3.6102 -0.7625 -0.0052 19 6 4.7846 -1.7069 -0.0124 20 7 2.3005 -1.1178 0.0005 21 6 1.8376 -2.4088 -0.0001 22 1 0.9729 -2.6722 -0.5913 23 6 2.4815 -3.3788 0.7605 24 7 3.2447 -3.0235 1.7675 25 14 2.2602 -5.1875 0.3490 26 1 2.7360 -5.4421 -1.0345 27 1 3.0464 -6.0116 1.3018 28 1 0.8229 -5.5463 0.4522 29 1 -0.3633 -0.0370 -1.0270 30 1 -0.3633 -0.8709 0.5456 31 1 -0.3633 0.9078 0.4815 32 1 1.9511 2.1218 0.0004 33 1 5.8216 0.9483 0.0014 34 1 1.2242 4.6012 -0.0054 35 1 -0.4064 6.4422 0.0149 36 1 0.3675 8.7773 0.0243 37 1 2.7743 9.2863 0.0248 38 1 4.4223 7.4609 0.0146 39 1 5.0703 -1.9394 1.0134 40 1 4.5087 -2.6258 -0.5299 41 1 5.6242 -1.2387 -0.5263 42 1 3.6347 -3.7000 2.3427 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048354389.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:27 Heat of formation + Delta-G solvation = 40.542860 kcal Electronic energy + Delta-G solvation = -27606.547260 eV Core-core repulsion = 23711.441853 eV Total energy + Delta-G solvation = -3895.105406 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.126 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.94968 -40.37493 -38.88760 -37.01957 -35.07128 -33.95972 -32.69213 -31.63289 -30.96268 -30.78747 -28.96513 -28.23991 -25.92819 -24.74765 -23.42432 -22.65680 -22.36038 -20.95636 -20.41198 -19.28558 -18.69399 -17.23307 -16.63997 -16.28586 -16.12667 -15.80522 -15.50509 -15.07675 -14.65109 -14.18190 -14.16784 -14.02374 -13.40973 -13.30974 -13.14414 -13.03560 -12.89388 -12.57129 -12.26953 -12.12101 -11.97890 -11.84231 -11.61148 -11.48175 -11.39913 -11.38831 -11.19696 -11.03775 -10.93905 -10.73298 -10.49944 -10.43306 -9.60606 -9.26328 -9.24369 -8.93528 -8.51897 -7.46998 -7.20903 -6.50329 -4.91083 0.49947 1.32411 1.43607 2.68523 2.80718 2.82675 2.95892 3.21910 3.22791 3.40560 3.53255 3.95293 4.25307 4.34356 4.38880 4.45876 4.78665 4.96161 5.03549 5.13440 5.44440 5.47731 5.59321 5.71436 5.89156 5.93190 5.95640 6.00342 6.05864 6.12630 6.15868 6.27697 6.38740 6.42294 6.49532 6.50608 6.56238 6.60623 6.62429 6.74708 6.85371 6.95050 7.01096 7.08960 7.30084 7.44264 7.79568 7.96031 8.05895 8.37855 8.47084 8.91503 9.77476 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.016394 B = 0.003023 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.539683 B = 9259.932737 C =10804.368335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.046 4.046 3 C -0.119 4.119 4 C -0.246 4.246 5 C 0.184 3.816 6 C -0.222 4.222 7 N -0.402 5.402 8 C 0.207 3.793 9 C 0.004 3.996 10 C -0.081 4.081 11 C -0.121 4.121 12 C -0.118 4.118 13 C -0.122 4.122 14 C -0.099 4.099 15 O -0.295 6.295 16 C 0.470 3.530 17 O -0.487 6.487 18 C 0.104 3.896 19 C -0.072 4.072 20 N -0.219 5.219 21 C -0.355 4.355 22 H 0.115 0.885 23 C 0.057 3.943 24 N -0.806 5.806 25 Si 0.933 3.067 26 H -0.261 1.261 27 H -0.273 1.273 28 H -0.264 1.264 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.153 0.847 33 H 0.133 0.867 34 H 0.138 0.862 35 H 0.127 0.873 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.129 0.871 39 H 0.088 0.912 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.197 7.973 -2.267 9.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.150 4.150 3 C -0.140 4.140 4 C -0.251 4.251 5 C 0.162 3.838 6 C -0.334 4.334 7 N -0.129 5.129 8 C -0.003 4.003 9 C 0.003 3.997 10 C -0.100 4.100 11 C -0.139 4.139 12 C -0.137 4.137 13 C -0.141 4.141 14 C -0.119 4.119 15 O -0.198 6.198 16 C 0.320 3.680 17 O -0.379 6.379 18 C -0.029 4.029 19 C -0.129 4.129 20 N 0.125 4.875 21 C -0.483 4.483 22 H 0.132 0.868 23 C -0.159 4.159 24 N -0.433 5.433 25 Si 0.756 3.244 26 H -0.186 1.186 27 H -0.198 1.198 28 H -0.188 1.188 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.170 0.830 33 H 0.151 0.849 34 H 0.156 0.844 35 H 0.145 0.855 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.147 0.853 39 H 0.106 0.894 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.313 7.127 -2.102 9.135 hybrid contribution 0.754 -0.578 0.105 0.956 sum -4.559 6.549 -1.997 8.226 Atomic orbital electron populations 1.20091 0.89169 1.02246 1.01179 1.20523 0.93692 0.86441 1.14356 1.22238 0.90883 0.97631 1.03260 1.18246 0.93052 0.91102 1.22695 1.20730 0.96986 0.89035 0.77024 1.20774 0.88396 0.94211 1.30016 1.70723 1.28705 1.00642 1.12860 1.22554 0.79229 0.92098 1.06455 1.17465 0.90394 0.89201 1.02626 1.21223 0.90885 1.00495 0.97401 1.21070 0.99600 0.92438 1.00806 1.21247 0.95754 0.96681 0.99998 1.21006 0.93045 0.98903 1.01097 1.21263 1.00359 0.91352 0.98925 1.84785 1.20885 1.35540 1.78629 1.21595 0.89202 0.81260 0.75915 1.90877 1.14836 1.80801 1.51392 1.21088 0.85975 0.92574 1.03244 1.20382 0.92514 0.96970 1.03007 1.40117 1.03782 1.05251 1.38379 1.19972 1.16445 0.81830 1.30088 0.86793 1.25701 0.94533 1.02205 0.93465 1.69899 1.25638 1.37123 1.10620 0.85871 0.79695 0.79253 0.79586 1.18563 1.19806 1.18805 0.92559 0.91702 0.91547 0.82979 0.84892 0.84446 0.85541 0.86079 0.85808 0.85342 0.89358 0.91902 0.92563 0.89916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.16 10.00 36.00 0.36 -0.80 16 2 C -0.05 -0.96 6.80 -81.67 -0.56 -1.51 16 3 C -0.12 -2.51 9.98 -37.37 -0.37 -2.88 16 4 C -0.25 -5.27 6.09 -104.84 -0.64 -5.91 16 5 C 0.18 3.71 9.76 -38.21 -0.37 3.34 16 6 C -0.22 -4.68 6.90 -82.19 -0.57 -5.25 16 7 N -0.40 -8.11 8.03 -7.84 -0.06 -8.17 16 8 C 0.21 3.89 7.78 -14.30 -0.11 3.78 16 9 C 0.00 0.07 5.87 -104.98 -0.62 -0.55 16 10 C -0.08 -1.10 9.66 -39.16 -0.38 -1.47 16 11 C -0.12 -1.32 10.03 -39.64 -0.40 -1.72 16 12 C -0.12 -1.17 10.04 -39.48 -0.40 -1.57 16 13 C -0.12 -1.30 10.03 -39.64 -0.40 -1.69 16 14 C -0.10 -1.31 9.70 -39.16 -0.38 -1.69 16 15 O -0.30 -6.00 10.35 -21.52 -0.22 -6.22 16 16 C 0.47 10.24 8.86 34.34 0.30 10.55 16 17 O -0.49 -11.36 18.06 -18.91 -0.34 -11.70 16 18 C 0.10 2.27 6.38 -80.78 -0.52 1.76 16 19 C -0.07 -1.38 8.30 36.01 0.30 -1.08 16 20 N -0.22 -4.91 2.74 -53.13 -0.15 -5.06 16 21 C -0.36 -7.78 8.93 -14.86 -0.13 -7.91 16 22 H 0.11 2.36 7.91 -52.48 -0.42 1.95 16 23 C 0.06 1.19 3.87 -17.49 -0.07 1.12 16 24 N -0.81 -17.80 10.58 55.50 0.59 -17.22 16 25 Si 0.93 16.04 29.60 -169.99 -5.03 11.01 16 26 H -0.26 -4.48 7.11 56.52 0.40 -4.08 16 27 H -0.27 -4.68 7.11 56.52 0.40 -4.28 16 28 H -0.26 -4.49 7.11 56.52 0.40 -4.09 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 1.10 7.81 -51.93 -0.41 0.70 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.15 3.05 6.26 -52.49 -0.33 2.72 16 33 H 0.13 2.39 7.55 -52.49 -0.40 1.99 16 34 H 0.14 1.90 7.76 -52.49 -0.41 1.50 16 35 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 36 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 38 H 0.13 1.63 7.83 -52.49 -0.41 1.22 16 39 H 0.09 1.76 6.88 -51.93 -0.36 1.40 16 40 H 0.06 1.21 6.98 -51.92 -0.36 0.85 16 41 H 0.06 0.92 7.57 -51.93 -0.39 0.53 16 42 H 0.29 5.93 8.31 -40.82 -0.34 5.59 16 LS Contribution 365.00 15.07 5.50 5.50 Total: -1.00 -27.33 365.00 -9.38 -36.71 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -4.73 Total: 8.63 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -4.94 Total: -13.49 kcal Atomic # 7 Polarization: -30.82 SS G_CDS: 0.38 Total: -30.44 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.56 Total: -17.92 kcal Atomic # 14 Polarization: 16.04 SS G_CDS: -5.03 Total: 11.01 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -27.33 -9.38 -36.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048354389.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.254 kcal (2) G-P(sol) polarization free energy of solvation -27.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds