Wall clock time and date at job start Tue Mar 31 2020 06:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30837 * 125.89739 * 2 1 4 4 N 1.40086 * 108.20700 * 179.97438 * 3 2 1 5 5 C 1.46491 * 126.04129 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46957 * 90.02579 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48496 * 109.47341 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46983 * 120.00379 * 10 8 6 13 13 H 1.48503 * 109.47491 * 240.00192 * 10 8 6 14 14 C 1.34955 * 107.92007 * 0.26426 * 4 3 2 15 15 C 1.50708 * 126.12162 * 179.73553 * 14 4 3 16 16 C 1.35316 * 107.74718 * 359.57319 * 14 4 3 17 17 C 1.50702 * 126.03724 * 180.15850 * 16 14 4 18 18 C 1.52999 * 109.47451 * 270.28570 * 17 16 14 19 19 C 1.50695 * 109.46918 * 180.02562 * 18 17 16 20 20 O 1.21273 * 120.00539 * 359.97438 * 19 18 17 21 21 N 1.34780 * 119.99639 * 179.97438 * 19 18 17 22 22 C 1.46385 * 119.64722 * 359.73148 * 21 19 18 23 23 C 1.53754 * 109.20455 * 114.90938 * 22 21 19 24 24 S 1.81738 * 108.75676 * 57.83426 * 23 22 21 25 25 C 1.81750 * 102.30228 * 305.34162 * 24 23 22 26 26 C 1.46374 * 119.64802 * 179.97438 * 21 19 18 27 27 H 1.08999 * 109.46544 * 90.02549 * 1 2 3 28 28 H 1.09000 * 109.47294 * 210.02512 * 1 2 3 29 29 H 1.09002 * 109.46965 * 330.03156 * 1 2 3 30 30 H 1.09004 * 109.47166 * 330.02845 * 5 4 3 31 31 H 1.08994 * 109.47507 * 210.02551 * 5 4 3 32 32 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 33 33 H 1.09003 * 109.47042 * 90.02700 * 15 14 4 34 34 H 1.09007 * 109.46511 * 210.02061 * 15 14 4 35 35 H 1.08991 * 109.47237 * 330.02091 * 15 14 4 36 36 H 1.09001 * 109.46924 * 30.28937 * 17 16 14 37 37 H 1.09002 * 109.46528 * 150.28490 * 17 16 14 38 38 H 1.08997 * 109.46981 * 300.00397 * 18 17 16 39 39 H 1.09000 * 109.46794 * 59.99860 * 18 17 16 40 40 H 1.08994 * 109.46487 * 234.91505 * 22 21 19 41 41 H 1.08998 * 109.46843 * 354.90336 * 22 21 19 42 42 H 1.08995 * 109.69993 * 297.99062 * 23 22 21 43 43 H 1.08999 * 109.62250 * 177.62259 * 23 22 21 44 44 H 1.08995 * 109.58474 * 294.74486 * 25 24 23 45 45 H 1.09006 * 109.69151 * 174.40414 * 25 24 23 46 46 H 1.09003 * 109.46644 * 5.09300 * 26 21 19 47 47 H 1.09004 * 109.47166 * 125.08239 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 0.0006 5 6 4.7899 1.5008 0.0003 6 6 5.1949 1.7984 1.4210 7 1 4.6294 1.3832 2.2421 8 6 6.2914 2.5957 1.6727 9 7 6.9803 3.1011 0.6729 10 14 6.7979 2.9583 3.4337 11 1 5.8663 2.2760 4.3673 12 1 8.1791 2.4632 3.6634 13 1 6.7516 4.4236 3.6705 14 6 3.6142 -0.7153 -0.0050 15 6 4.8352 -1.5988 -0.0121 16 6 2.3272 -1.1330 0.0006 17 6 1.8600 -2.5658 0.0008 18 6 1.7017 -3.0508 -1.4416 19 6 1.2340 -4.4834 -1.4413 20 8 1.0461 -5.0598 -0.3910 21 7 1.0243 -5.1240 -2.6085 22 6 1.2478 -4.4190 -3.8718 23 6 2.4159 -5.0812 -4.6208 24 16 2.0190 -6.8342 -4.8895 25 6 1.6555 -7.4116 -3.2050 26 6 0.5706 -6.5156 -2.5993 27 1 -0.3632 -0.0005 -1.0277 28 1 -0.3634 -0.8897 0.5142 29 1 -0.3633 0.8903 0.5134 30 1 4.5563 2.4332 -0.5138 31 1 5.6093 0.9981 -0.5134 32 1 7.7514 3.6623 0.8499 33 1 5.1321 -1.8165 1.0139 34 1 4.6063 -2.5306 -0.5295 35 1 5.6498 -1.0886 -0.5258 36 1 2.5935 -3.1870 0.5147 37 1 0.9012 -2.6352 0.5147 38 1 0.9682 -2.4295 -1.9554 39 1 2.6605 -2.9813 -1.9555 40 1 0.3458 -4.4712 -4.4813 41 1 1.4885 -3.3756 -3.6679 42 1 3.3264 -4.9995 -4.0272 43 1 2.5610 -4.5880 -5.5819 44 1 2.5579 -7.3546 -2.5965 45 1 1.3019 -8.4422 -3.2382 46 1 0.3738 -6.8267 -1.5733 47 1 -0.3431 -6.6037 -3.1872 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049214388.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:07 Heat of formation + Delta-G solvation = 21.270334 kcal Electronic energy + Delta-G solvation = -26995.799230 eV Core-core repulsion = 23305.709240 eV Total energy + Delta-G solvation = -3690.089991 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.73539 -40.21984 -36.76262 -34.51121 -33.56880 -32.51980 -32.30732 -30.72967 -29.94921 -28.99501 -26.90609 -25.91066 -24.53016 -24.03363 -22.94540 -22.04231 -19.55744 -18.86292 -18.69907 -17.71621 -16.74730 -16.54931 -16.36999 -15.83562 -15.41105 -14.82193 -14.73457 -14.53187 -14.34385 -14.23040 -13.85458 -13.44480 -13.34556 -13.04437 -12.97817 -12.86650 -12.56035 -12.50054 -12.34971 -12.17852 -12.09398 -11.83560 -11.70837 -11.43093 -11.35907 -11.29833 -10.98038 -10.84708 -10.77846 -10.29002 -10.24338 -9.97467 -9.73967 -9.64468 -9.27012 -8.67930 -8.22160 -8.10051 -7.51934 -6.29449 -4.36614 1.27596 2.04992 2.40315 2.56700 2.74752 3.17891 3.25996 3.31455 3.33384 3.57497 4.19709 4.24687 4.27331 4.51530 4.58988 4.62051 4.79175 4.94789 5.04245 5.06573 5.10644 5.19403 5.28194 5.29149 5.30231 5.36968 5.42761 5.60333 5.67368 5.77006 5.90108 5.91222 5.97649 6.00779 6.08254 6.19868 6.32577 6.39054 6.50477 6.81005 6.96838 6.99446 7.08075 7.47508 7.63728 7.85267 7.92126 8.01983 8.63369 8.72620 9.30045 10.78240 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.017921 B = 0.002399 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.018802 B =11667.054562 C =12198.250050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.051 3.949 3 N -0.296 5.296 4 N -0.324 5.324 5 C 0.257 3.743 6 C -0.535 4.535 7 H 0.064 0.936 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.906 3.094 11 H -0.271 1.271 12 H -0.280 1.280 13 H -0.280 1.280 14 C 0.094 3.906 15 C -0.086 4.086 16 C -0.270 4.270 17 C -0.010 4.010 18 C -0.133 4.133 19 C 0.516 3.484 20 O -0.533 6.533 21 N -0.624 5.624 22 C 0.106 3.894 23 C -0.102 4.102 24 S -0.260 6.260 25 C -0.099 4.099 26 C 0.109 3.891 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.267 0.733 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.118 0.882 44 H 0.087 0.913 45 H 0.115 0.885 46 H 0.106 0.894 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.131 -18.498 -11.192 24.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.114 4.114 3 N -0.120 5.120 4 N -0.104 5.104 5 C 0.139 3.861 6 C -0.573 4.573 7 H 0.082 0.918 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.733 3.267 11 H -0.196 1.196 12 H -0.206 1.206 13 H -0.206 1.206 14 C -0.038 4.038 15 C -0.144 4.144 16 C -0.282 4.282 17 C -0.049 4.049 18 C -0.173 4.173 19 C 0.306 3.694 20 O -0.408 6.408 21 N -0.359 5.359 22 C -0.019 4.019 23 C -0.252 4.252 24 S -0.034 6.034 25 C -0.248 4.248 26 C -0.015 4.015 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.104 0.896 41 H 0.122 0.878 42 H 0.108 0.892 43 H 0.136 0.864 44 H 0.106 0.894 45 H 0.133 0.867 46 H 0.124 0.876 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.896 -17.862 -11.630 23.938 hybrid contribution 0.634 0.168 1.824 1.938 sum -10.262 -17.693 -9.806 22.683 Atomic orbital electron populations 1.20028 0.88048 1.02460 1.01792 1.21944 0.96109 0.90752 1.02558 1.77282 0.87489 1.22656 1.24606 1.49250 1.05790 1.04192 1.51137 1.19661 0.77952 0.89532 0.98967 1.21341 1.12805 1.31826 0.91350 0.91753 1.24931 0.95712 0.95015 0.98154 1.69928 1.18936 1.33152 1.30977 0.86305 0.78418 0.78316 0.83693 1.19555 1.20629 1.20596 1.20775 0.96086 0.85696 1.01214 1.20348 0.93787 0.97074 1.03202 1.19324 0.91352 0.95004 1.22500 1.19398 1.01645 0.90977 0.92926 1.21810 1.02867 0.91070 1.01590 1.21191 0.76062 0.89444 0.82747 1.90688 1.50831 1.68490 1.30833 1.48053 1.68522 1.12870 1.06480 1.21941 0.97956 0.97102 0.84935 1.23974 1.01593 0.94369 1.05243 1.86949 1.90998 1.11410 1.14019 1.23855 1.02865 1.02897 0.95198 1.21591 0.95731 0.80467 1.03750 0.91612 0.91254 0.91542 0.93066 0.93105 0.92296 0.90428 0.91217 0.90904 0.91421 0.91215 0.88788 0.89024 0.89613 0.87811 0.89178 0.86401 0.89413 0.86683 0.87639 0.90094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.89 10.26 36.01 0.37 -0.52 16 2 C 0.05 0.94 7.22 -82.40 -0.59 0.34 16 3 N -0.30 -6.69 12.58 33.67 0.42 -6.27 16 4 N -0.32 -7.42 3.60 -58.31 -0.21 -7.63 16 5 C 0.26 6.49 6.00 -5.20 -0.03 6.46 16 6 C -0.53 -14.68 9.39 -34.44 -0.32 -15.01 16 7 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 8 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -24.96 13.29 55.43 0.74 -24.22 16 10 Si 0.91 21.10 29.54 -169.99 -5.02 16.08 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 C 0.09 1.81 6.93 -82.26 -0.57 1.24 16 15 C -0.09 -1.37 9.72 36.01 0.35 -1.02 16 16 C -0.27 -4.65 5.35 -105.05 -0.56 -5.21 16 17 C -0.01 -0.14 4.41 -27.88 -0.12 -0.27 16 18 C -0.13 -1.42 3.99 -27.89 -0.11 -1.53 16 19 C 0.52 5.76 7.66 -10.99 -0.08 5.67 16 20 O -0.53 -7.79 15.28 5.56 0.09 -7.70 16 21 N -0.62 -5.33 2.78 -173.30 -0.48 -5.81 16 22 C 0.11 0.66 6.17 -3.71 -0.02 0.64 16 23 C -0.10 -0.65 6.68 37.55 0.25 -0.40 16 24 S -0.26 -2.06 22.29 -107.50 -2.40 -4.46 16 25 C -0.10 -0.70 6.66 37.26 0.25 -0.45 16 26 C 0.11 0.84 6.22 -4.01 -0.02 0.81 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.83 7.26 -51.93 -0.38 0.46 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.05 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.05 1.27 7.04 -51.93 -0.37 0.90 16 32 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.07 0.89 7.79 -51.93 -0.40 0.48 16 35 H 0.07 1.19 7.07 -51.93 -0.37 0.82 16 36 H 0.07 0.98 7.75 -51.93 -0.40 0.57 16 37 H 0.07 0.97 7.21 -51.93 -0.37 0.60 16 38 H 0.09 0.89 7.66 -51.93 -0.40 0.49 16 39 H 0.09 0.90 7.88 -51.93 -0.41 0.49 16 40 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.10 0.58 5.73 -51.93 -0.30 0.28 16 42 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.11 0.63 8.14 -51.92 -0.42 0.20 16 46 H 0.11 0.94 6.88 -51.93 -0.36 0.58 16 47 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 392.61 15.07 5.92 5.92 Total: -1.00 -32.43 392.61 -9.80 -42.23 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -7.53 Total: -0.57 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -1.33 Total: -7.56 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: 0.47 Total: -43.93 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: 0.09 Total: -7.70 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -2.06 SS G_CDS: -2.40 Total: -4.46 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.43 -9.80 -42.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049214388.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.496 kcal (2) G-P(sol) polarization free energy of solvation -32.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds