Wall clock time and date at job start Tue Mar 31 2020 04:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00121 * 2 1 4 4 H 1.48505 * 109.46788 * 269.99744 * 3 2 1 5 5 H 1.48493 * 109.47169 * 29.99778 * 3 2 1 6 6 H 1.48498 * 109.47205 * 150.00200 * 3 2 1 7 7 C 1.37880 * 119.99700 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99825 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00443 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47282 * 179.97438 * 9 7 2 11 11 C 1.46497 * 120.00115 * 270.00116 * 10 9 7 12 12 C 1.50708 * 109.46702 * 270.00062 * 11 10 9 13 13 C 1.34514 * 125.78977 * 90.00439 * 12 11 10 14 14 C 1.41385 * 106.84015 * 179.97438 * 13 12 11 15 15 C 1.34520 * 106.83906 * 359.97438 * 14 13 12 16 16 O 1.34299 * 108.41841 * 359.73790 * 15 14 13 17 17 C 1.34778 * 119.99524 * 90.00225 * 10 9 7 18 18 O 1.21277 * 120.00307 * 359.97438 * 17 10 9 19 19 C 1.50707 * 119.99668 * 180.02562 * 17 10 9 20 20 N 1.46897 * 109.47188 * 180.02562 * 19 17 10 21 21 C 1.47446 * 110.99737 * 290.12321 * 20 19 17 22 22 C 1.54318 * 107.23303 * 236.74038 * 21 20 19 23 23 C 1.55138 * 103.01792 * 337.71992 * 22 21 20 24 24 H 1.09005 * 111.02121 * 277.54485 * 23 22 21 25 25 C 1.50702 * 110.99045 * 153.74778 * 23 22 21 26 26 N 1.34772 * 120.00156 * 67.72709 * 25 23 22 27 27 O 1.21286 * 119.99551 * 247.72899 * 25 23 22 28 28 C 1.47840 * 110.99988 * 169.28145 * 20 19 17 29 29 H 0.97002 * 119.99455 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.46904 * 59.99567 * 9 7 2 31 31 H 1.09006 * 109.46631 * 300.00125 * 9 7 2 32 32 H 1.08994 * 109.47019 * 29.99727 * 11 10 9 33 33 H 1.08995 * 109.47103 * 150.00353 * 11 10 9 34 34 H 1.08002 * 126.57920 * 0.03084 * 13 12 11 35 35 H 1.07992 * 126.57923 * 180.02562 * 14 13 12 36 36 H 1.08003 * 125.78434 * 180.02562 * 15 14 13 37 37 H 1.08995 * 109.47021 * 59.99717 * 19 17 10 38 38 H 1.09000 * 109.46711 * 299.99656 * 19 17 10 39 39 H 1.08996 * 109.88895 * 356.15286 * 21 20 19 40 40 H 1.09001 * 109.88694 * 117.33682 * 21 20 19 41 41 H 1.09003 * 110.70170 * 96.09788 * 22 21 20 42 42 H 1.09002 * 110.70518 * 219.33180 * 22 21 20 43 43 H 0.97001 * 120.00478 * 359.97438 * 26 25 23 44 44 H 0.97007 * 119.99549 * 180.02562 * 26 25 23 45 45 H 1.08998 * 110.37675 * 265.18757 * 28 20 19 46 46 H 1.08993 * 110.37873 * 27.42361 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6790 -4.1695 -1.2682 12 6 1.7622 -5.2837 -1.7032 13 6 0.6697 -5.1471 -2.4759 14 6 0.1149 -6.4380 -2.6327 15 6 0.9019 -7.2864 -1.9469 16 8 1.9015 -6.5825 -1.3910 17 6 2.6408 -4.1249 1.1678 18 8 2.2471 -3.6637 2.2181 19 6 3.6206 -5.2700 1.1678 20 7 3.9382 -5.6427 2.5528 21 6 4.7441 -4.5972 3.2097 22 6 6.0433 -5.2659 3.7060 23 6 5.6497 -6.7632 3.8058 24 1 5.1347 -6.9704 4.7439 25 6 6.8576 -7.6505 3.6491 26 7 7.8140 -7.6609 4.5987 27 8 6.9691 -8.3554 2.6684 28 6 4.6891 -6.9153 2.6001 29 1 -0.4849 0.8401 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8904 32 1 2.6868 -3.3879 -2.0278 33 1 3.6884 -4.5595 -1.1378 34 1 0.2897 -4.2277 -2.8965 35 1 -0.7704 -6.6940 -3.1958 36 1 0.7573 -8.3533 -1.8620 37 1 4.5331 -4.9674 0.6542 38 1 3.1806 -6.1246 0.6538 39 1 4.9821 -3.8090 2.4955 40 1 4.1948 -4.1817 4.0545 41 1 6.8485 -5.1264 2.9846 42 1 6.3283 -4.8762 4.6834 43 1 7.7251 -7.0969 5.3828 44 1 8.5917 -8.2318 4.4975 45 1 4.0088 -7.7517 2.7602 46 1 5.2537 -7.0573 1.6787 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051918365.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:08 Heat of formation + Delta-G solvation = -43.226635 kcal Electronic energy + Delta-G solvation = -29486.959936 eV Core-core repulsion = 25378.631755 eV Total energy + Delta-G solvation = -4108.328182 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.29173 -40.34103 -39.13918 -37.63052 -35.11600 -34.03350 -32.85559 -32.68781 -32.02933 -30.10683 -29.10486 -28.09788 -26.24694 -25.25093 -23.15655 -22.57983 -21.45451 -20.93760 -20.44775 -20.16647 -18.52895 -17.67251 -17.23734 -17.17951 -16.58061 -16.24545 -16.03259 -15.80453 -15.32168 -14.89433 -14.79082 -14.54005 -14.21132 -13.96670 -13.49243 -13.29404 -13.16397 -12.83310 -12.58987 -12.52878 -12.33311 -12.23054 -11.95907 -11.70013 -11.53701 -11.42346 -11.29837 -11.19477 -10.91208 -10.81757 -10.59672 -10.19109 -10.12036 -10.01079 -9.71066 -9.63506 -8.92378 -8.44944 -8.27341 -8.13644 -7.76390 -6.05338 -4.10394 1.93687 2.35178 2.85806 3.15928 3.16933 3.28800 3.35802 3.38891 3.51187 3.78615 4.15724 4.40029 4.44590 4.49811 4.66676 4.94518 5.02710 5.08799 5.21500 5.26066 5.28693 5.29547 5.34839 5.38602 5.54045 5.59163 5.66002 5.75012 5.86860 5.90171 5.95788 6.04283 6.21457 6.26720 6.33530 6.45024 6.75029 6.89119 6.98571 7.05298 7.14531 7.35411 7.46288 7.52781 7.91012 7.96340 8.21590 8.35378 8.89431 9.09914 9.54803 11.02753 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009057 B = 0.003832 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3090.858532 B = 7306.053961 C = 9867.302755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.062 3.938 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.249 3.751 10 N -0.597 5.597 11 C 0.191 3.809 12 C -0.027 4.027 13 C -0.193 4.193 14 C -0.214 4.214 15 C -0.049 4.049 16 O -0.177 6.177 17 C 0.511 3.489 18 O -0.515 6.515 19 C 0.029 3.971 20 N -0.509 5.509 21 C 0.052 3.948 22 C -0.131 4.131 23 C -0.123 4.123 24 H 0.113 0.887 25 C 0.529 3.471 26 N -0.856 5.856 27 O -0.542 6.542 28 C 0.062 3.938 29 H 0.263 0.737 30 H 0.033 0.967 31 H 0.044 0.956 32 H 0.116 0.884 33 H 0.081 0.919 34 H 0.150 0.850 35 H 0.144 0.856 36 H 0.198 0.802 37 H 0.059 0.941 38 H 0.101 0.899 39 H 0.060 0.940 40 H 0.089 0.911 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.402 0.598 44 H 0.400 0.600 45 H 0.085 0.915 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.437 -15.303 3.073 19.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.076 0.924 9 C 0.130 3.870 10 N -0.330 5.330 11 C 0.066 3.934 12 C -0.078 4.078 13 C -0.213 4.213 14 C -0.233 4.233 15 C -0.117 4.117 16 O -0.074 6.074 17 C 0.297 3.703 18 O -0.389 6.389 19 C -0.102 4.102 20 N -0.233 5.233 21 C -0.075 4.075 22 C -0.170 4.170 23 C -0.145 4.145 24 H 0.131 0.869 25 C 0.313 3.687 26 N -0.419 5.419 27 O -0.418 6.418 28 C -0.066 4.066 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.134 0.866 33 H 0.099 0.901 34 H 0.167 0.833 35 H 0.162 0.838 36 H 0.214 0.786 37 H 0.077 0.923 38 H 0.119 0.881 39 H 0.078 0.922 40 H 0.108 0.892 41 H 0.088 0.912 42 H 0.101 0.899 43 H 0.231 0.769 44 H 0.231 0.769 45 H 0.104 0.896 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.696 -15.439 3.396 19.087 hybrid contribution 1.133 1.024 -0.353 1.567 sum 11.828 -14.415 3.043 18.893 Atomic orbital electron populations 1.69939 1.05989 1.27009 1.50227 1.24927 0.94849 0.99155 0.95068 0.86513 0.79838 0.83173 0.77979 1.20654 1.21111 1.19929 1.21420 0.93311 0.90602 1.51286 0.92436 1.19290 0.87360 0.81743 0.98616 1.48316 1.46576 1.34858 1.03222 1.19872 0.93864 0.90594 0.89042 1.23306 1.00831 0.82743 1.00965 1.21693 0.97073 0.98869 1.03680 1.21821 1.02826 0.93255 1.05402 1.23933 0.89813 0.97817 1.00101 1.83992 1.44466 1.18676 1.60217 1.20176 0.82494 0.83461 0.84180 1.90666 1.57244 1.60473 1.30545 1.22327 0.98561 0.98865 0.90479 1.63310 1.42709 1.02245 1.15039 1.22803 0.90824 0.93667 1.00228 1.22848 0.99151 0.92456 1.02523 1.22461 0.94327 0.95329 1.02358 0.86929 1.20467 0.84032 0.82003 0.82149 1.43870 1.24894 1.48199 1.24923 1.90754 1.78536 1.42416 1.30104 1.22870 0.94181 0.93004 0.96505 0.92703 0.94932 0.93760 0.86626 0.90073 0.83261 0.83796 0.78565 0.92339 0.88051 0.92198 0.89239 0.91164 0.89932 0.76942 0.76931 0.89624 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.53 -14.53 9.39 -34.44 -0.32 -14.86 16 8 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 9 C 0.25 6.39 5.16 -5.20 -0.03 6.37 16 10 N -0.60 -12.53 2.44 -176.43 -0.43 -12.96 16 11 C 0.19 3.14 5.74 -5.19 -0.03 3.11 16 12 C -0.03 -0.44 6.85 -35.62 -0.24 -0.68 16 13 C -0.19 -3.06 10.81 -39.70 -0.43 -3.49 16 14 C -0.21 -2.92 10.91 -39.70 -0.43 -3.35 16 15 C -0.05 -0.62 12.09 29.42 0.36 -0.27 16 16 O -0.18 -2.69 9.56 5.73 0.05 -2.63 16 17 C 0.51 10.74 7.32 -10.98 -0.08 10.66 16 18 O -0.51 -12.90 15.12 5.56 0.08 -12.81 16 19 C 0.03 0.47 3.58 -4.97 -0.02 0.45 16 20 N -0.51 -7.78 4.85 -232.70 -1.13 -8.91 16 21 C 0.05 0.74 5.65 -2.83 -0.02 0.72 16 22 C -0.13 -1.28 6.40 -24.91 -0.16 -1.44 16 23 C -0.12 -1.21 3.43 -89.63 -0.31 -1.52 16 24 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 25 C 0.53 5.37 7.42 -10.99 -0.08 5.29 16 26 N -0.86 -5.10 8.87 31.22 0.28 -4.82 16 27 O -0.54 -7.80 16.56 5.55 0.09 -7.71 16 28 C 0.06 0.79 5.80 -2.30 -0.01 0.78 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 31 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 32 H 0.12 1.84 8.07 -51.93 -0.42 1.42 16 33 H 0.08 1.12 6.44 -51.93 -0.33 0.78 16 34 H 0.15 2.34 8.06 -52.49 -0.42 1.91 16 35 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.20 1.71 8.06 -52.48 -0.42 1.28 16 37 H 0.06 0.86 7.22 -51.93 -0.38 0.48 16 38 H 0.10 1.58 6.86 -51.93 -0.36 1.22 16 39 H 0.06 0.93 7.31 -51.93 -0.38 0.55 16 40 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.07 0.70 8.03 -51.93 -0.42 0.28 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.40 1.29 8.83 -40.82 -0.36 0.93 16 44 H 0.40 2.00 8.93 -40.82 -0.36 1.64 16 45 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.06 0.83 7.07 -51.93 -0.37 0.46 16 LS Contribution 384.67 15.07 5.80 5.80 Total: -1.00 -36.25 384.67 -8.13 -44.37 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.68 Total: 5.29 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -1.90 Total: 3.43 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: -0.55 Total: -52.16 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: 0.23 Total: -23.16 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.25 -8.13 -44.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051918365.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.146 kcal (2) G-P(sol) polarization free energy of solvation -36.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds