Wall clock time and date at job start Tue Mar 31 2020 04:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 119.99789 * 2 1 4 4 H 1.48498 * 109.46910 * 239.99721 * 3 2 1 5 5 H 1.48500 * 109.47098 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47147 * 119.99805 * 3 2 1 7 7 C 1.37882 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99865 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99709 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46970 * 179.97438 * 9 7 2 11 11 C 1.46501 * 120.00189 * 269.99667 * 10 9 7 12 12 C 1.50696 * 109.47207 * 270.00240 * 11 10 9 13 13 C 1.34519 * 125.78971 * 89.99826 * 12 11 10 14 14 C 1.41384 * 106.84185 * 179.97438 * 13 12 11 15 15 C 1.34517 * 106.84011 * 0.02562 * 14 13 12 16 16 O 1.34298 * 125.79321 * 269.69002 * 12 11 10 17 17 C 1.34775 * 119.99998 * 90.00377 * 10 9 7 18 18 O 1.21286 * 119.99900 * 180.02562 * 17 10 9 19 19 C 1.50703 * 119.99990 * 359.97438 * 17 10 9 20 20 N 1.46898 * 109.47054 * 180.02562 * 19 17 10 21 21 C 1.47908 * 110.99980 * 69.87582 * 20 19 17 22 22 C 1.53993 * 107.05700 * 145.84080 * 21 20 19 23 23 C 1.54595 * 105.14156 * 358.77979 * 22 21 20 24 24 H 1.09002 * 110.72361 * 96.39803 * 23 22 21 25 25 C 1.50695 * 110.72434 * 219.50415 * 23 22 21 26 26 N 1.34777 * 120.00400 * 296.14885 * 25 23 22 27 27 O 1.21280 * 120.00457 * 116.14537 * 25 23 22 28 28 C 1.48534 * 111.00286 * 187.27090 * 20 19 17 29 29 H 0.96995 * 120.00581 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47128 * 59.99797 * 9 7 2 31 31 H 1.09000 * 109.47102 * 299.99824 * 9 7 2 32 32 H 1.09008 * 109.46504 * 29.99797 * 11 10 9 33 33 H 1.08998 * 109.47333 * 150.00099 * 11 10 9 34 34 H 1.07998 * 126.58154 * 0.03645 * 13 12 11 35 35 H 1.07998 * 126.57839 * 180.02562 * 14 13 12 36 36 H 1.07995 * 125.78889 * 179.97438 * 15 14 13 37 37 H 1.08999 * 109.46679 * 60.00996 * 19 17 10 38 38 H 1.09001 * 109.47515 * 300.00575 * 19 17 10 39 39 H 1.09000 * 109.91335 * 26.49151 * 21 20 19 40 40 H 1.08994 * 110.08433 * 265.28753 * 21 20 19 41 41 H 1.08997 * 110.31194 * 239.86204 * 22 21 20 42 42 H 1.09000 * 110.30739 * 117.69487 * 22 21 20 43 43 H 0.97007 * 119.99754 * 359.97438 * 26 25 23 44 44 H 0.96999 * 120.00456 * 180.02562 * 26 25 23 45 45 H 1.09000 * 110.66603 * 81.84380 * 28 20 19 46 46 H 1.09003 * 110.66913 * 318.72032 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.6792 -4.1694 -1.2682 12 6 1.7625 -5.2836 -1.7032 13 6 0.6699 -5.1471 -2.4758 14 6 0.1152 -6.4380 -2.6328 15 6 0.9017 -7.2862 -1.9461 16 8 1.9011 -6.5822 -1.3900 17 6 2.6411 -4.1248 1.1677 18 8 3.4296 -5.0463 1.1677 19 6 2.1517 -3.5518 2.4728 20 7 2.7724 -4.2771 3.5894 21 6 4.2164 -3.9707 3.6830 22 6 4.5851 -3.9849 5.1781 23 6 3.2612 -4.2851 5.9177 24 1 3.1786 -5.3480 6.1447 25 6 3.1553 -3.4632 7.1763 26 7 4.0392 -3.6463 8.1772 27 8 2.2747 -2.6369 7.2888 28 6 2.1848 -3.8591 4.8879 29 1 -0.4851 0.8400 -0.0004 30 1 0.6248 -2.5571 -0.8896 31 1 0.6242 -2.5567 0.8903 32 1 2.6868 -3.3877 -2.0279 33 1 3.6887 -4.5594 -1.1379 34 1 0.2899 -4.2278 -2.8965 35 1 -0.7701 -6.6940 -3.1959 36 1 0.7566 -8.3529 -1.8604 37 1 1.0681 -3.6537 2.5307 38 1 2.4212 -2.4972 2.5305 39 1 4.4150 -2.9855 3.2609 40 1 4.7946 -4.7260 3.1508 41 1 4.9756 -3.0133 5.4807 42 1 5.3169 -4.7671 5.3798 43 1 4.7433 -4.3074 8.0875 44 1 3.9708 -3.1175 8.9875 45 1 1.2471 -4.3834 5.0724 46 1 2.0345 -2.7798 4.9126 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051918367.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:11 Heat of formation + Delta-G solvation = -47.268275 kcal Electronic energy + Delta-G solvation = -29434.587500 eV Core-core repulsion = 25326.084060 eV Total energy + Delta-G solvation = -4108.503440 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.14132 -40.18806 -39.12243 -37.51655 -35.10682 -33.91969 -32.86875 -32.48004 -32.09121 -30.34423 -28.93166 -27.32755 -26.98377 -24.78711 -23.00172 -22.66712 -21.31062 -21.07146 -20.19932 -20.00816 -18.48262 -17.51169 -17.14511 -16.91778 -16.56570 -16.24716 -15.92099 -15.80124 -15.28300 -14.69890 -14.60366 -14.48438 -14.33486 -13.90247 -13.61063 -13.20960 -12.94376 -12.59570 -12.44381 -12.40542 -12.27474 -12.18214 -11.95059 -11.63319 -11.43940 -11.31197 -11.26297 -11.03920 -10.95138 -10.75494 -10.66979 -10.22941 -9.96348 -9.88001 -9.86235 -9.54764 -9.09963 -8.60197 -8.20466 -8.04303 -7.82909 -6.21937 -4.30419 2.06232 2.50428 2.93311 3.21843 3.26081 3.27832 3.28838 3.30567 3.56201 3.87651 4.27424 4.32707 4.56855 4.63354 4.85320 5.09408 5.11630 5.15850 5.29908 5.37375 5.38313 5.44144 5.53636 5.68244 5.79256 5.80170 5.94233 5.98846 6.06254 6.10299 6.13442 6.14615 6.30846 6.31420 6.45689 6.58010 6.67568 6.86491 7.03982 7.09247 7.13016 7.23115 7.46901 7.56209 7.71958 8.00281 8.10684 8.26715 8.74754 9.00844 9.38147 10.84688 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007964 B = 0.004147 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3515.051949 B = 6750.571039 C = 9426.400577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.068 3.932 3 Si 0.896 3.104 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.543 4.543 8 H 0.061 0.939 9 C 0.238 3.762 10 N -0.595 5.595 11 C 0.198 3.802 12 C -0.013 4.013 13 C -0.204 4.204 14 C -0.217 4.217 15 C -0.053 4.053 16 O -0.166 6.166 17 C 0.523 3.477 18 O -0.549 6.549 19 C 0.034 3.966 20 N -0.500 5.500 21 C 0.041 3.959 22 C -0.119 4.119 23 C -0.115 4.115 24 H 0.111 0.889 25 C 0.526 3.474 26 N -0.857 5.857 27 O -0.538 6.538 28 C 0.054 3.946 29 H 0.267 0.733 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.111 0.889 33 H 0.088 0.912 34 H 0.148 0.852 35 H 0.143 0.857 36 H 0.196 0.804 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.046 0.954 40 H 0.092 0.908 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.401 0.599 44 H 0.399 0.601 45 H 0.087 0.913 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.259 -10.477 7.104 14.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.079 0.921 9 C 0.119 3.881 10 N -0.327 5.327 11 C 0.074 3.926 12 C -0.065 4.065 13 C -0.224 4.224 14 C -0.237 4.237 15 C -0.121 4.121 16 O -0.061 6.061 17 C 0.311 3.689 18 O -0.428 6.428 19 C -0.096 4.096 20 N -0.224 5.224 21 C -0.087 4.087 22 C -0.157 4.157 23 C -0.137 4.137 24 H 0.129 0.871 25 C 0.311 3.689 26 N -0.421 5.421 27 O -0.414 6.414 28 C -0.074 4.074 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.129 0.871 33 H 0.107 0.893 34 H 0.166 0.834 35 H 0.161 0.839 36 H 0.212 0.788 37 H 0.119 0.881 38 H 0.099 0.901 39 H 0.064 0.936 40 H 0.111 0.889 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.229 0.771 44 H 0.230 0.770 45 H 0.105 0.895 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.003 -10.983 7.056 14.368 hybrid contribution 0.378 1.816 0.217 1.868 sum 6.381 -9.167 7.273 13.328 Atomic orbital electron populations 1.69901 1.06000 1.27534 1.49130 1.24927 0.94825 0.99231 0.94598 0.86592 0.79606 0.82692 0.78813 1.20058 1.21094 1.20142 1.21440 0.93549 0.90414 1.52767 0.92079 1.19461 0.87440 0.82308 0.98927 1.48268 1.46202 1.34747 1.03493 1.19657 0.95142 0.90164 0.87617 1.23251 1.00157 0.82993 1.00136 1.21667 0.97464 0.98793 1.04476 1.21786 1.02904 0.93318 1.05647 1.23945 0.90068 0.97876 1.00210 1.84107 1.43873 1.18669 1.59453 1.20299 0.80978 0.82300 0.85371 1.90597 1.35319 1.29261 1.87580 1.22146 1.00804 0.97530 0.89169 1.64558 1.02758 1.53708 1.01385 1.22875 0.90112 1.01112 0.94628 1.22429 0.95625 1.02094 0.95594 1.22206 0.98140 1.00881 0.92470 0.87134 1.20561 0.80721 0.82903 0.84764 1.43874 1.34000 1.44104 1.20094 1.90771 1.34422 1.35260 1.80974 1.23055 0.96826 1.00389 0.87175 0.92357 0.94405 0.94407 0.87138 0.89335 0.83410 0.83930 0.78761 0.88089 0.90059 0.93558 0.88925 0.91283 0.90286 0.77058 0.77009 0.89478 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.07 13.29 55.43 0.74 -23.34 16 2 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.54 -13.62 9.28 -34.44 -0.32 -13.94 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.24 5.51 4.97 -5.19 -0.03 5.48 16 10 N -0.60 -12.36 2.44 -176.43 -0.43 -12.79 16 11 C 0.20 3.68 5.94 -5.19 -0.03 3.65 16 12 C -0.01 -0.25 6.90 -35.63 -0.25 -0.49 16 13 C -0.20 -3.45 10.81 -39.70 -0.43 -3.88 16 14 C -0.22 -3.22 10.91 -39.70 -0.43 -3.65 16 15 C -0.05 -0.77 12.09 29.42 0.36 -0.41 16 16 O -0.17 -3.03 10.65 5.72 0.06 -2.97 16 17 C 0.52 10.87 7.47 -10.98 -0.08 10.79 16 18 O -0.55 -12.18 14.66 5.55 0.08 -12.10 16 19 C 0.03 0.64 3.80 -4.98 -0.02 0.63 16 20 N -0.50 -8.31 4.96 -231.89 -1.15 -9.46 16 21 C 0.04 0.61 5.75 -2.75 -0.02 0.59 16 22 C -0.12 -1.30 6.48 -25.37 -0.16 -1.46 16 23 C -0.11 -1.31 3.44 -89.92 -0.31 -1.62 16 24 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 25 C 0.53 6.23 7.30 -10.99 -0.08 6.15 16 26 N -0.86 -6.22 8.85 31.22 0.28 -5.95 16 27 O -0.54 -8.90 16.60 5.56 0.09 -8.81 16 28 C 0.05 0.79 5.60 -1.90 -0.01 0.78 16 29 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 31 H 0.04 0.92 6.44 -51.93 -0.33 0.58 16 32 H 0.11 1.92 8.07 -51.92 -0.42 1.50 16 33 H 0.09 1.63 7.42 -51.93 -0.39 1.24 16 34 H 0.15 2.40 8.06 -52.49 -0.42 1.98 16 35 H 0.14 1.72 8.06 -52.49 -0.42 1.29 16 36 H 0.20 2.00 8.06 -52.49 -0.42 1.58 16 37 H 0.10 1.89 7.37 -51.93 -0.38 1.51 16 38 H 0.08 1.63 7.67 -51.93 -0.40 1.24 16 39 H 0.05 0.75 7.57 -51.93 -0.39 0.35 16 40 H 0.09 1.49 7.39 -51.93 -0.38 1.10 16 41 H 0.07 0.74 7.84 -51.93 -0.41 0.33 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.40 1.72 8.83 -40.82 -0.36 1.36 16 44 H 0.40 2.52 8.93 -40.82 -0.36 2.16 16 45 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 46 H 0.06 1.03 7.37 -51.93 -0.38 0.65 16 LS Contribution 386.21 15.07 5.82 5.82 Total: -1.00 -32.79 386.21 -8.15 -40.95 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -6.71 Total: 9.16 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: -1.91 Total: 4.26 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: -0.57 Total: -51.53 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: 0.23 Total: -23.88 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.79 -8.15 -40.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051918367.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.323 kcal (2) G-P(sol) polarization free energy of solvation -32.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds