Wall clock time and date at job start Tue Mar 31 2020 04:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 119.99789 * 2 1 4 4 H 1.48498 * 109.46910 * 239.99721 * 3 2 1 5 5 H 1.48500 * 109.47098 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47147 * 119.99805 * 3 2 1 7 7 C 1.37882 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99865 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99709 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46970 * 179.97438 * 9 7 2 11 11 C 1.46501 * 120.00189 * 269.99667 * 10 9 7 12 12 C 1.50696 * 109.47207 * 270.00240 * 11 10 9 13 13 C 1.34519 * 125.78971 * 89.99826 * 12 11 10 14 14 C 1.41384 * 106.84185 * 179.97438 * 13 12 11 15 15 C 1.34517 * 106.84011 * 0.02562 * 14 13 12 16 16 O 1.34298 * 125.79321 * 269.69002 * 12 11 10 17 17 C 1.34775 * 119.99998 * 90.00377 * 10 9 7 18 18 O 1.21286 * 119.99900 * 180.02562 * 17 10 9 19 19 C 1.50703 * 119.99990 * 359.97438 * 17 10 9 20 20 N 1.46898 * 109.47054 * 180.02562 * 19 17 10 21 21 C 1.47908 * 110.99980 * 69.87582 * 20 19 17 22 22 C 1.53993 * 107.05700 * 145.84080 * 21 20 19 23 23 C 1.54595 * 105.14156 * 358.77979 * 22 21 20 24 24 H 1.09002 * 110.72361 * 96.39803 * 23 22 21 25 25 C 1.50695 * 110.72434 * 219.50415 * 23 22 21 26 26 N 1.34777 * 120.00400 * 296.14885 * 25 23 22 27 27 O 1.21280 * 120.00457 * 116.14537 * 25 23 22 28 28 C 1.48534 * 111.00286 * 187.27090 * 20 19 17 29 29 H 0.96995 * 120.00581 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47128 * 59.99797 * 9 7 2 31 31 H 1.09000 * 109.47102 * 299.99824 * 9 7 2 32 32 H 1.09008 * 109.46504 * 29.99797 * 11 10 9 33 33 H 1.08998 * 109.47333 * 150.00099 * 11 10 9 34 34 H 1.07998 * 126.58154 * 0.03645 * 13 12 11 35 35 H 1.07998 * 126.57839 * 180.02562 * 14 13 12 36 36 H 1.07995 * 125.78889 * 179.97438 * 15 14 13 37 37 H 1.08999 * 109.46679 * 60.00996 * 19 17 10 38 38 H 1.09001 * 109.47515 * 300.00575 * 19 17 10 39 39 H 1.09000 * 109.91335 * 26.49151 * 21 20 19 40 40 H 1.08994 * 110.08433 * 265.28753 * 21 20 19 41 41 H 1.08997 * 110.31194 * 239.86204 * 22 21 20 42 42 H 1.09000 * 110.30739 * 117.69487 * 22 21 20 43 43 H 0.97007 * 119.99754 * 359.97438 * 26 25 23 44 44 H 0.96999 * 120.00456 * 180.02562 * 26 25 23 45 45 H 1.09000 * 110.66603 * 81.84380 * 28 20 19 46 46 H 1.09003 * 110.66913 * 318.72032 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.6792 -4.1694 -1.2682 12 6 1.7625 -5.2836 -1.7032 13 6 0.6699 -5.1471 -2.4758 14 6 0.1152 -6.4380 -2.6328 15 6 0.9017 -7.2862 -1.9461 16 8 1.9011 -6.5822 -1.3900 17 6 2.6411 -4.1248 1.1677 18 8 3.4296 -5.0463 1.1677 19 6 2.1517 -3.5518 2.4728 20 7 2.7724 -4.2771 3.5894 21 6 4.2164 -3.9707 3.6830 22 6 4.5851 -3.9849 5.1781 23 6 3.2612 -4.2851 5.9177 24 1 3.1786 -5.3480 6.1447 25 6 3.1553 -3.4632 7.1763 26 7 4.0392 -3.6463 8.1772 27 8 2.2747 -2.6369 7.2888 28 6 2.1848 -3.8591 4.8879 29 1 -0.4851 0.8400 -0.0004 30 1 0.6248 -2.5571 -0.8896 31 1 0.6242 -2.5567 0.8903 32 1 2.6868 -3.3877 -2.0279 33 1 3.6887 -4.5594 -1.1379 34 1 0.2899 -4.2278 -2.8965 35 1 -0.7701 -6.6940 -3.1959 36 1 0.7566 -8.3529 -1.8604 37 1 1.0681 -3.6537 2.5307 38 1 2.4212 -2.4972 2.5305 39 1 4.4150 -2.9855 3.2609 40 1 4.7946 -4.7260 3.1508 41 1 4.9756 -3.0133 5.4807 42 1 5.3169 -4.7671 5.3798 43 1 4.7433 -4.3074 8.0875 44 1 3.9708 -3.1175 8.9875 45 1 1.2471 -4.3834 5.0724 46 1 2.0345 -2.7798 4.9126 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051918367.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:10 Heat of formation + Delta-G solvation = -71.902160 kcal Electronic energy + Delta-G solvation = -29435.655706 eV Core-core repulsion = 25326.084060 eV Total energy + Delta-G solvation = -4109.571646 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.43559 -41.33951 -40.58267 -38.75880 -36.83748 -34.84183 -34.68879 -33.85274 -33.31835 -31.75306 -30.05259 -29.16124 -28.37551 -26.24274 -24.84141 -23.74861 -22.59182 -22.30761 -21.50162 -20.97700 -20.01004 -18.83138 -18.40889 -18.16872 -17.87311 -17.78901 -17.38001 -17.04255 -16.67067 -16.29718 -16.18816 -15.77165 -15.54831 -15.15007 -14.90032 -14.46674 -14.44045 -14.16554 -13.85828 -13.69409 -13.65252 -13.52529 -13.41331 -13.35621 -12.94887 -12.72795 -12.62296 -12.48746 -12.45402 -12.22646 -12.09970 -11.79049 -11.75434 -10.96443 -10.86446 -10.75828 -10.66477 -10.57889 -9.68771 -9.45123 -9.37281 -8.22220 -6.36951 0.75564 1.41220 1.42169 1.49400 1.58714 1.65584 1.71645 2.14863 2.29049 2.38986 2.58014 3.08319 3.11997 3.41395 3.55078 3.77815 3.88985 3.97115 4.16307 4.18763 4.26233 4.28839 4.32320 4.37599 4.45762 4.50417 4.57971 4.69880 4.78422 4.83029 4.93990 4.95837 4.99982 5.04681 5.16781 5.17448 5.21985 5.56558 5.64978 5.74002 5.83196 5.84621 5.90295 6.02216 6.26735 6.45217 6.50643 6.77279 7.27452 7.34365 7.38375 8.83508 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007964 B = 0.004147 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3515.051949 B = 6750.571039 C = 9426.400577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.025 3.975 3 Si 0.953 3.047 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.056 0.944 9 C 0.256 3.744 10 N -0.597 5.597 11 C 0.198 3.802 12 C -0.042 4.042 13 C -0.207 4.207 14 C -0.225 4.225 15 C -0.043 4.043 16 O -0.190 6.190 17 C 0.520 3.480 18 O -0.563 6.563 19 C 0.043 3.957 20 N -0.504 5.504 21 C 0.037 3.963 22 C -0.106 4.106 23 C -0.104 4.104 24 H 0.138 0.862 25 C 0.527 3.473 26 N -0.830 5.830 27 O -0.593 6.593 28 C 0.049 3.951 29 H 0.268 0.732 30 H 0.025 0.975 31 H 0.023 0.977 32 H 0.117 0.883 33 H 0.086 0.914 34 H 0.148 0.852 35 H 0.173 0.827 36 H 0.239 0.761 37 H 0.096 0.904 38 H 0.063 0.937 39 H 0.026 0.974 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.116 0.884 43 H 0.420 0.580 44 H 0.408 0.592 45 H 0.089 0.911 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.343 -11.878 7.928 16.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.176 4.176 3 Si 0.779 3.221 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.201 1.201 7 C -0.586 4.586 8 H 0.075 0.925 9 C 0.136 3.864 10 N -0.328 5.328 11 C 0.075 3.925 12 C -0.094 4.094 13 C -0.227 4.227 14 C -0.243 4.243 15 C -0.111 4.111 16 O -0.086 6.086 17 C 0.308 3.692 18 O -0.442 6.442 19 C -0.088 4.088 20 N -0.228 5.228 21 C -0.091 4.091 22 C -0.144 4.144 23 C -0.126 4.126 24 H 0.156 0.844 25 C 0.312 3.688 26 N -0.394 5.394 27 O -0.474 6.474 28 C -0.079 4.079 29 H 0.077 0.923 30 H 0.043 0.957 31 H 0.041 0.959 32 H 0.135 0.865 33 H 0.105 0.895 34 H 0.166 0.834 35 H 0.190 0.810 36 H 0.255 0.745 37 H 0.114 0.886 38 H 0.081 0.919 39 H 0.045 0.955 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.135 0.865 43 H 0.252 0.748 44 H 0.240 0.760 45 H 0.107 0.893 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.146 -12.417 7.894 16.358 hybrid contribution 0.033 2.140 -0.067 2.142 sum 7.180 -10.277 7.827 14.779 Atomic orbital electron populations 1.69997 1.07238 1.28269 1.50148 1.25615 0.95495 1.02182 0.94304 0.85679 0.78479 0.79078 0.78907 1.19226 1.20812 1.20069 1.21627 0.93392 0.91349 1.52227 0.92540 1.19070 0.87334 0.82560 0.97459 1.48248 1.45740 1.34262 1.04572 1.19687 0.95255 0.90796 0.86745 1.23053 1.01108 0.83220 1.01976 1.21889 0.97080 1.00014 1.03761 1.22147 1.03962 0.92136 1.06105 1.24865 0.88366 0.99530 0.98319 1.84083 1.45407 1.18756 1.60337 1.20569 0.80689 0.82087 0.85820 1.90572 1.35942 1.29886 1.87825 1.21979 1.00663 0.96589 0.89571 1.64566 1.03770 1.53130 1.01357 1.22899 0.88969 0.99561 0.97659 1.22401 0.96066 1.03865 0.92078 1.22158 0.96747 1.02222 0.91458 0.84381 1.20576 0.80628 0.82150 0.85473 1.43637 1.32960 1.43754 1.19079 1.90762 1.36948 1.37638 1.82034 1.23074 0.98369 0.98970 0.87454 0.92309 0.95694 0.95866 0.86537 0.89522 0.83411 0.80970 0.74486 0.88552 0.91916 0.95519 0.89907 0.90776 0.86520 0.74834 0.76022 0.89266 0.94437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.66 13.29 21.45 0.28 -50.38 16 2 C 0.02 1.30 5.46 84.66 0.46 1.77 16 3 Si 0.95 41.80 29.54 68.60 2.03 43.82 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.55 -28.14 9.28 25.60 0.24 -27.91 16 8 H 0.06 2.91 7.81 -2.91 -0.02 2.89 16 9 C 0.26 12.31 4.97 85.63 0.43 12.74 16 10 N -0.60 -25.68 2.44 -830.50 -2.03 -27.70 16 11 C 0.20 7.58 5.94 85.63 0.51 8.09 16 12 C -0.04 -1.56 6.90 24.83 0.17 -1.39 16 13 C -0.21 -6.98 10.81 22.19 0.24 -6.74 16 14 C -0.22 -6.24 10.91 22.19 0.24 -5.99 16 15 C -0.04 -1.18 12.09 66.97 0.81 -0.37 16 16 O -0.19 -6.82 10.65 -2.44 -0.03 -6.85 16 17 C 0.52 22.36 7.47 87.66 0.66 23.02 16 18 O -0.56 -25.44 14.66 -3.05 -0.04 -25.48 16 19 C 0.04 1.71 3.80 85.56 0.33 2.03 16 20 N -0.50 -17.02 4.96 -887.56 -4.40 -21.42 16 21 C 0.04 1.11 5.75 86.44 0.50 1.60 16 22 C -0.11 -2.07 6.48 31.47 0.20 -1.87 16 23 C -0.10 -2.17 3.44 -10.34 -0.04 -2.21 16 24 H 0.14 2.17 8.14 -2.39 -0.02 2.15 16 25 C 0.53 11.62 7.30 87.66 0.64 12.26 16 26 N -0.83 -9.64 8.85 -173.54 -1.54 -11.18 16 27 O -0.59 -19.62 16.60 -3.03 -0.05 -19.67 16 28 C 0.05 1.47 5.60 86.65 0.48 1.96 16 29 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 30 H 0.02 1.26 8.07 -2.39 -0.02 1.24 16 31 H 0.02 1.18 6.44 -2.39 -0.02 1.17 16 32 H 0.12 4.19 8.07 -2.38 -0.02 4.17 16 33 H 0.09 3.29 7.42 -2.39 -0.02 3.28 16 34 H 0.15 4.86 8.06 -2.91 -0.02 4.83 16 35 H 0.17 3.64 8.06 -2.91 -0.02 3.61 16 36 H 0.24 4.00 8.06 -2.91 -0.02 3.98 16 37 H 0.10 3.84 7.37 -2.39 -0.02 3.82 16 38 H 0.06 2.70 7.67 -2.39 -0.02 2.68 16 39 H 0.03 0.89 7.57 -2.39 -0.02 0.87 16 40 H 0.08 2.64 7.39 -2.39 -0.02 2.62 16 41 H 0.07 1.41 7.84 -2.39 -0.02 1.39 16 42 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.42 1.90 8.83 -92.70 -0.82 1.09 16 44 H 0.41 4.07 8.93 -92.71 -0.83 3.24 16 45 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 46 H 0.04 1.31 7.37 -2.39 -0.02 1.29 16 Total: -1.00 -73.09 386.21 -0.53 -73.62 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: -0.63 Total: 28.25 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: 5.87 Total: 16.99 kcal Atomic # 7 Polarization: -103.01 SS G_CDS: -7.68 Total: -110.69 kcal Atomic # 8 Polarization: -51.88 SS G_CDS: -0.12 Total: -52.00 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.82 kcal Total: -73.09 -0.53 -73.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051918367.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.720 kcal (2) G-P(sol) polarization free energy of solvation -73.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds