Wall clock time and date at job start Tue Mar 31 2020 04:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34224 * 117.00193 * 2 1 4 4 O 1.20830 * 120.00238 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99958 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.47206 * 179.97438 * 5 3 2 7 7 H 1.08998 * 109.43318 * 54.90772 * 6 5 3 8 8 C 1.50842 * 109.41716 * 174.78822 * 6 5 3 9 9 C 1.38883 * 117.70007 * 289.00582 * 8 6 5 10 10 C 1.38248 * 120.54145 * 178.72383 * 9 8 6 11 11 O 1.35993 * 120.22153 * 180.02562 * 10 9 8 12 12 C 1.42910 * 116.99993 * 0.02562 * 11 10 9 13 13 C 1.39200 * 119.56248 * 0.08035 * 10 9 8 14 14 O 1.35996 * 120.16991 * 180.26809 * 13 10 9 15 15 C 1.42901 * 117.00206 * 179.97438 * 14 13 10 16 16 C 1.38207 * 119.66978 * 0.27895 * 13 10 9 17 17 C 1.37688 * 122.32408 * 108.24797 * 8 6 5 18 18 C 1.50625 * 122.83865 * 1.81639 * 17 8 6 19 19 C 1.52774 * 110.86748 * 339.59868 * 18 17 8 20 20 N 1.46676 * 109.43256 * 294.99837 * 6 5 3 21 21 C 1.36937 * 121.33141 * 104.40407 * 20 6 5 22 22 H 1.07994 * 119.99680 * 29.07345 * 21 20 6 23 23 C 1.38813 * 119.99702 * 209.07788 * 21 20 6 24 24 N 1.31618 * 120.00161 * 19.02178 * 23 21 20 25 25 Si 1.86803 * 119.99625 * 199.02178 * 23 21 20 26 26 H 1.48498 * 109.46921 * 90.00089 * 25 23 21 27 27 H 1.48501 * 109.46797 * 209.99631 * 25 23 21 28 28 H 1.48497 * 109.47143 * 329.99745 * 25 23 21 29 29 H 1.08998 * 109.47486 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47337 * 300.00605 * 1 2 3 31 31 H 1.09002 * 109.46658 * 59.99720 * 1 2 3 32 32 H 1.08999 * 109.47381 * 59.99588 * 5 3 2 33 33 H 1.08999 * 109.47187 * 299.99561 * 5 3 2 34 34 H 1.08006 * 119.72751 * 358.99701 * 9 8 6 35 35 H 1.09003 * 109.47088 * 179.97438 * 12 11 10 36 36 H 1.08998 * 109.46380 * 299.99604 * 12 11 10 37 37 H 1.09000 * 109.46883 * 59.99820 * 12 11 10 38 38 H 1.09003 * 109.46830 * 299.99550 * 15 14 13 39 39 H 1.09005 * 109.47159 * 59.99436 * 15 14 13 40 40 H 1.09001 * 109.46731 * 179.97438 * 15 14 13 41 41 H 1.07996 * 119.69412 * 179.82853 * 16 13 10 42 42 H 1.09003 * 109.19826 * 99.95773 * 18 17 8 43 43 H 1.08998 * 109.19744 * 219.24388 * 18 17 8 44 44 H 1.09000 * 109.77044 * 167.12041 * 19 18 17 45 45 H 1.08997 * 109.77501 * 287.86212 * 19 18 17 46 46 H 0.96997 * 119.99964 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.0003 2.7420 -0.0011 7 1 3.5367 3.2575 0.8400 8 6 5.5011 2.8211 0.1275 9 6 6.0626 2.4854 1.3526 10 6 7.4337 2.5120 1.5279 11 8 7.9767 2.1815 2.7301 12 6 7.0704 1.8148 3.7725 13 6 8.2548 2.8803 0.4659 14 8 9.6054 2.9053 0.6230 15 6 10.3835 3.2928 -0.5113 16 6 7.6906 3.2206 -0.7490 17 6 6.3112 3.1947 -0.9212 18 6 5.7704 3.5933 -2.2693 19 6 4.3524 3.0599 -2.4662 20 7 3.5776 3.3754 -1.2547 21 6 2.5051 4.2257 -1.2966 22 1 2.2436 4.8082 -0.4257 23 6 1.7541 4.3388 -2.4586 24 7 1.8141 3.3964 -3.3753 25 14 0.6583 5.8287 -2.7209 26 1 1.4287 6.8944 -3.4108 27 1 -0.5093 5.4438 -3.5540 28 1 0.1843 6.3322 -1.4068 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 3.9558 0.7807 -0.8908 33 1 3.9564 0.7805 0.8892 34 1 5.4232 2.1971 2.1739 35 1 7.6325 1.5753 4.6751 36 1 6.3943 2.6455 3.9748 37 1 6.4933 0.9437 3.4624 38 1 10.1970 2.6013 -1.3331 39 1 10.1051 4.3019 -0.8153 40 1 11.4416 3.2710 -0.2506 41 1 8.3271 3.5090 -1.5724 42 1 5.7578 4.6808 -2.3432 43 1 6.4167 3.1893 -3.0485 44 1 3.8950 3.5394 -3.3316 45 1 4.3819 1.9806 -2.6155 46 1 1.2896 3.4756 -4.1874 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052659102.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:25 Heat of formation + Delta-G solvation = -99.297740 kcal Electronic energy + Delta-G solvation = -30538.492434 eV Core-core repulsion = 26395.440075 eV Total energy + Delta-G solvation = -4143.052358 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.51217 -39.53896 -38.27511 -38.04987 -35.74398 -34.89853 -32.74924 -31.99852 -29.74272 -29.35827 -28.27080 -27.30472 -27.14716 -26.34952 -24.47524 -22.52698 -22.10323 -21.60000 -20.21066 -18.81364 -18.01698 -17.07670 -16.76422 -16.36805 -15.98405 -15.93537 -15.75429 -15.63761 -15.13525 -14.72159 -14.37453 -14.29501 -14.00277 -13.93295 -13.37661 -13.05261 -12.80380 -12.70563 -12.52678 -12.28234 -12.03245 -11.76148 -11.66484 -11.42654 -11.26817 -11.19647 -11.12545 -11.06634 -10.95802 -10.70876 -10.45743 -10.12684 -10.02948 -9.93431 -9.75673 -9.64652 -9.38190 -8.39478 -8.26228 -7.36727 -6.67775 -5.71438 -3.11331 1.57231 1.78004 3.24892 3.41530 3.44111 3.44301 3.49498 3.50634 3.52861 4.01788 4.54751 4.98199 5.05744 5.16291 5.19504 5.23553 5.29040 5.30086 5.35731 5.45049 5.46946 5.54454 5.55247 5.59976 5.62418 5.66821 5.73106 5.84893 5.93997 5.96354 6.04320 6.19844 6.26221 6.33797 6.40748 6.56552 6.61447 6.73246 6.97893 7.17879 7.21829 7.23288 7.28853 7.62076 7.79239 7.93074 8.49037 8.77346 9.24731 9.86048 10.42862 11.38192 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011731 B = 0.004427 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.213326 B = 6322.674970 C = 7829.972850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.379 6.379 3 C 0.448 3.552 4 O -0.448 6.448 5 C -0.118 4.118 6 C 0.217 3.783 7 H 0.079 0.921 8 C -0.070 4.070 9 C -0.169 4.169 10 C 0.086 3.914 11 O -0.312 6.312 12 C 0.028 3.972 13 C 0.091 3.909 14 O -0.312 6.312 15 C 0.029 3.971 16 C -0.181 4.181 17 C -0.042 4.042 18 C -0.103 4.103 19 C 0.156 3.844 20 N -0.573 5.573 21 C -0.209 4.209 22 H 0.066 0.934 23 C 0.004 3.996 24 N -0.905 5.905 25 Si 0.899 3.101 26 H -0.290 1.290 27 H -0.294 1.294 28 H -0.280 1.280 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.131 0.869 35 H 0.095 0.905 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.094 0.906 41 H 0.129 0.871 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.104 0.896 45 H 0.020 0.980 46 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.491 -5.447 7.721 14.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.298 6.298 3 C 0.287 3.713 4 O -0.329 6.329 5 C -0.158 4.158 6 C 0.108 3.892 7 H 0.097 0.903 8 C -0.071 4.071 9 C -0.189 4.189 10 C 0.042 3.958 11 O -0.226 6.226 12 C -0.068 4.068 13 C 0.046 3.954 14 O -0.226 6.226 15 C -0.067 4.067 16 C -0.200 4.200 17 C -0.042 4.042 18 C -0.142 4.142 19 C 0.030 3.970 20 N -0.292 5.292 21 C -0.338 4.338 22 H 0.084 0.916 23 C -0.193 4.193 24 N -0.550 5.550 25 Si 0.730 3.270 26 H -0.218 1.218 27 H -0.221 1.221 28 H -0.206 1.206 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.099 0.901 34 H 0.148 0.852 35 H 0.113 0.887 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.113 0.887 41 H 0.146 0.854 42 H 0.090 0.910 43 H 0.077 0.923 44 H 0.122 0.878 45 H 0.038 0.962 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 10.419 -5.132 7.782 13.981 hybrid contribution -1.039 0.659 -0.445 1.308 sum 9.381 -4.473 7.337 12.722 Atomic orbital electron populations 1.23016 0.77859 1.02127 1.02242 1.86446 1.22331 1.35252 1.85764 1.23535 0.91951 0.81176 0.74593 1.90805 1.66299 1.34980 1.40807 1.21971 0.88171 1.02081 1.03591 1.19187 0.87401 0.89486 0.93088 0.90278 1.19894 0.96853 0.98544 0.91836 1.20992 0.92214 1.06524 0.99129 1.18025 0.90592 1.02313 0.84909 1.86117 1.35136 1.83009 1.18346 1.23002 0.94474 0.99828 0.89479 1.18074 0.82330 1.02376 0.92599 1.86119 1.14623 1.84338 1.37544 1.22987 0.95356 0.99688 0.88654 1.21129 0.95994 1.07027 0.95847 1.19453 0.91113 0.97216 0.96462 1.21148 1.00166 1.01362 0.91519 1.20958 0.86690 0.96898 0.92427 1.44141 1.31940 1.51168 1.01974 1.18959 1.03578 1.12781 0.98514 0.91614 1.24879 0.97468 0.97748 0.99199 1.69989 1.43558 1.31302 1.10163 0.86325 0.79986 0.83074 0.77652 1.21771 1.22111 1.20556 0.89436 0.92837 0.91998 0.88744 0.90140 0.85165 0.88708 0.92803 0.92822 0.92890 0.92900 0.88717 0.85354 0.90986 0.92288 0.87784 0.96220 0.94011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 10.56 101.05 1.07 1.72 16 2 O -0.38 -7.12 10.56 -39.24 -0.41 -7.53 16 3 C 0.45 9.37 7.82 36.01 0.28 9.66 16 4 O -0.45 -10.94 13.11 -18.75 -0.25 -11.19 16 5 C -0.12 -2.18 5.32 -27.88 -0.15 -2.33 16 6 C 0.22 4.38 2.02 -68.92 -0.14 4.25 16 7 H 0.08 1.67 7.79 -51.93 -0.40 1.26 16 8 C -0.07 -1.25 5.17 -104.51 -0.54 -1.79 16 9 C -0.17 -2.67 8.17 -39.34 -0.32 -2.99 16 10 C 0.09 1.39 6.69 -39.22 -0.26 1.13 16 11 O -0.31 -4.65 10.30 -33.92 -0.35 -5.00 16 12 C 0.03 0.29 9.82 101.05 0.99 1.28 16 13 C 0.09 1.46 6.69 -39.24 -0.26 1.20 16 14 O -0.31 -4.65 10.29 -33.93 -0.35 -5.00 16 15 C 0.03 0.29 9.81 101.05 0.99 1.28 16 16 C -0.18 -2.84 8.60 -39.30 -0.34 -3.18 16 17 C -0.04 -0.75 5.76 -104.56 -0.60 -1.35 16 18 C -0.10 -1.91 5.86 -28.04 -0.16 -2.07 16 19 C 0.16 3.50 5.51 -3.76 -0.02 3.48 16 20 N -0.57 -13.58 2.32 -166.32 -0.39 -13.96 16 21 C -0.21 -5.60 7.22 -15.06 -0.11 -5.71 16 22 H 0.07 1.83 7.90 -52.49 -0.41 1.41 16 23 C 0.00 0.12 4.94 -17.43 -0.09 0.03 16 24 N -0.90 -25.62 11.23 55.49 0.62 -25.00 16 25 Si 0.90 22.16 29.59 -169.99 -5.03 17.13 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 28 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 29 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.05 0.80 8.13 -51.93 -0.42 0.37 16 31 H 0.06 1.09 8.13 -51.93 -0.42 0.66 16 32 H 0.09 1.81 7.21 -51.93 -0.37 1.43 16 33 H 0.08 1.22 7.78 -51.93 -0.40 0.81 16 34 H 0.13 1.76 6.28 -52.48 -0.33 1.43 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.53 7.67 -51.93 -0.40 0.13 16 37 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 38 H 0.05 0.50 7.67 -51.93 -0.40 0.10 16 39 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.13 1.70 6.26 -52.49 -0.33 1.37 16 42 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.06 0.95 8.10 -51.93 -0.42 0.53 16 44 H 0.10 2.64 5.74 -51.93 -0.30 2.34 16 45 H 0.02 0.45 7.25 -51.93 -0.38 0.07 16 46 H 0.25 6.96 8.31 -40.82 -0.34 6.63 16 LS Contribution 370.81 15.07 5.59 5.59 Total: -1.00 -32.70 370.81 -6.84 -39.54 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -6.61 Total: 0.82 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 0.34 Total: 4.61 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.24 Total: -38.96 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -1.36 Total: -28.73 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.13 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.70 -6.84 -39.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052659102.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.754 kcal (2) G-P(sol) polarization free energy of solvation -32.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds