Wall clock time and date at job start Tue Mar 31 2020 04:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34234 * 116.99949 * 2 1 4 4 O 1.20823 * 119.99991 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99837 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.46786 * 180.02562 * 5 3 2 7 7 H 1.08999 * 109.39582 * 306.59715 * 6 5 3 8 8 C 1.50843 * 109.43273 * 186.71619 * 6 5 3 9 9 C 1.38883 * 117.71287 * 48.54077 * 8 6 5 10 10 C 1.38249 * 120.54104 * 178.81558 * 9 8 6 11 11 O 1.36000 * 120.21991 * 180.02562 * 10 9 8 12 12 C 1.42897 * 116.99976 * 359.97438 * 11 10 9 13 13 C 1.39203 * 119.56472 * 0.02562 * 10 9 8 14 14 O 1.35997 * 120.16786 * 180.23549 * 13 10 9 15 15 C 1.42905 * 116.99834 * 180.02562 * 14 13 10 16 16 C 1.38207 * 119.66851 * 0.51611 * 13 10 9 17 17 C 1.37696 * 122.31781 * 227.89857 * 8 6 5 18 18 C 1.50627 * 122.82338 * 2.15543 * 17 8 6 19 19 C 1.52769 * 110.87369 * 339.38062 * 18 17 8 20 20 N 1.46672 * 109.43216 * 66.48768 * 6 5 3 21 21 C 1.36929 * 121.32582 * 344.59150 * 20 6 5 22 22 H 1.07995 * 120.00615 * 33.96552 * 21 20 6 23 23 C 1.38819 * 119.99911 * 213.97777 * 21 20 6 24 24 N 1.31622 * 119.99873 * 210.67442 * 23 21 20 25 25 Si 1.86802 * 120.00124 * 30.66371 * 23 21 20 26 26 H 1.48505 * 109.46534 * 95.29821 * 25 23 21 27 27 H 1.48498 * 109.46933 * 215.29560 * 25 23 21 28 28 H 1.48496 * 109.47083 * 335.29960 * 25 23 21 29 29 H 1.08993 * 109.47298 * 299.99991 * 1 2 3 30 30 H 1.08996 * 109.47192 * 60.00060 * 1 2 3 31 31 H 1.09004 * 109.46556 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46998 * 60.00631 * 5 3 2 33 33 H 1.09002 * 109.47983 * 300.00103 * 5 3 2 34 34 H 1.08002 * 119.72532 * 358.84150 * 9 8 6 35 35 H 1.08995 * 109.47581 * 180.02562 * 12 11 10 36 36 H 1.09008 * 109.47190 * 300.00266 * 12 11 10 37 37 H 1.09004 * 109.47212 * 59.99726 * 12 11 10 38 38 H 1.09004 * 109.46591 * 180.02562 * 15 14 13 39 39 H 1.08995 * 109.47236 * 300.00445 * 15 14 13 40 40 H 1.09002 * 109.46820 * 60.00442 * 15 14 13 41 41 H 1.08002 * 119.69400 * 179.73208 * 16 13 10 42 42 H 1.09004 * 109.19741 * 99.73695 * 18 17 8 43 43 H 1.08996 * 109.19864 * 219.06265 * 18 17 8 44 44 H 1.09001 * 109.77183 * 167.15439 * 19 18 17 45 45 H 1.08998 * 109.77000 * 287.94007 * 19 18 17 46 46 H 0.96996 * 119.99956 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 0.0011 7 1 3.5152 3.2632 -0.8244 8 6 5.4972 2.8229 -0.1647 9 6 6.0755 2.0759 -1.1827 10 6 7.4395 2.1253 -1.4025 11 8 7.9989 1.3915 -2.4015 12 6 7.1171 0.5881 -3.1882 13 6 8.2366 2.9312 -0.5945 14 8 9.5791 2.9928 -0.8029 15 6 10.3324 3.8409 0.0663 16 6 7.6577 3.6640 0.4243 17 6 6.2857 3.6121 0.6424 18 6 5.7312 4.4222 1.7849 19 6 4.2318 4.6561 1.6090 20 7 3.6088 3.3662 1.2694 21 6 2.7005 2.7725 2.1046 22 1 2.6594 1.6960 2.1801 23 6 1.8321 3.5544 2.8541 24 7 1.4115 3.1311 4.0272 25 14 1.2609 5.2074 2.1978 26 1 -0.0487 5.0439 1.5170 27 1 1.1171 6.1643 3.3243 28 1 2.2602 5.7280 1.2305 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 3.9564 0.7806 -0.8893 33 1 3.9558 0.7809 0.8908 34 1 5.4545 1.4515 -1.8079 35 1 7.6904 0.0554 -3.9470 36 1 6.6099 -0.1312 -2.5451 37 1 6.3783 1.2268 -3.6724 38 1 11.3864 3.7983 -0.2083 39 1 9.9742 4.8662 -0.0263 40 1 10.2110 3.5053 1.0962 41 1 8.2764 4.2861 1.0542 42 1 5.9035 3.8885 2.7196 43 1 6.2414 5.3847 1.8226 44 1 3.8068 5.0378 2.5374 45 1 4.0621 5.3709 0.8038 46 1 0.8051 3.6776 4.5511 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052659103.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:28 Heat of formation + Delta-G solvation = -88.732573 kcal Electronic energy + Delta-G solvation = -30699.753593 eV Core-core repulsion = 26557.159374 eV Total energy + Delta-G solvation = -4142.594218 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.63468 -39.71354 -38.34197 -38.17575 -35.91516 -35.00222 -33.12870 -32.08242 -30.19938 -29.50656 -28.26802 -27.47054 -27.20877 -26.28776 -24.90607 -22.73452 -21.97360 -21.66554 -20.02474 -19.38246 -18.14565 -17.05165 -16.89993 -16.74986 -16.18016 -16.00056 -15.77557 -15.57114 -15.19036 -14.84277 -14.59235 -14.54877 -14.22672 -13.78047 -13.64897 -13.18602 -12.87400 -12.59370 -12.50490 -12.38672 -12.15850 -11.98857 -11.84177 -11.73105 -11.57175 -11.44845 -11.29390 -11.15386 -11.04355 -10.64603 -10.49494 -10.22202 -10.10758 -9.96931 -9.85306 -9.53513 -9.40166 -8.41370 -8.36268 -7.44444 -6.86623 -5.96714 -3.26263 1.48696 1.69091 3.15497 3.35537 3.37820 3.41672 3.47505 3.58692 3.66916 3.91961 4.63746 4.80008 4.90515 5.00147 5.08661 5.14836 5.18257 5.18751 5.23771 5.36888 5.41003 5.42946 5.49133 5.51471 5.53909 5.56916 5.66659 5.75350 5.80416 5.88672 5.96383 6.02869 6.04772 6.18206 6.21265 6.40355 6.46189 6.61169 6.76379 6.78459 6.99301 7.09017 7.14995 7.16431 7.71825 7.97442 8.30623 8.68243 8.91975 9.75014 10.15844 11.18025 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012451 B = 0.004740 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.358394 B = 5906.328161 C = 7672.182423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.375 6.375 3 C 0.460 3.540 4 O -0.461 6.461 5 C -0.096 4.096 6 C 0.220 3.780 7 H 0.052 0.948 8 C -0.074 4.074 9 C -0.171 4.171 10 C 0.090 3.910 11 O -0.311 6.311 12 C 0.027 3.973 13 C 0.092 3.908 14 O -0.311 6.311 15 C 0.028 3.972 16 C -0.179 4.179 17 C -0.044 4.044 18 C -0.100 4.100 19 C 0.148 3.852 20 N -0.590 5.590 21 C -0.250 4.250 22 H 0.074 0.926 23 C 0.046 3.954 24 N -0.895 5.895 25 Si 0.858 3.142 26 H -0.293 1.293 27 H -0.302 1.302 28 H -0.258 1.258 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.133 0.867 35 H 0.095 0.905 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.095 0.905 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.130 0.870 42 H 0.080 0.920 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.033 0.967 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.430 -3.204 -10.790 16.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.293 6.293 3 C 0.301 3.699 4 O -0.344 6.344 5 C -0.134 4.134 6 C 0.114 3.886 7 H 0.069 0.931 8 C -0.076 4.076 9 C -0.190 4.190 10 C 0.045 3.955 11 O -0.225 6.225 12 C -0.069 4.069 13 C 0.047 3.953 14 O -0.225 6.225 15 C -0.067 4.067 16 C -0.198 4.198 17 C -0.044 4.044 18 C -0.139 4.139 19 C 0.022 3.978 20 N -0.314 5.314 21 C -0.378 4.378 22 H 0.092 0.908 23 C -0.155 4.155 24 N -0.536 5.536 25 Si 0.687 3.313 26 H -0.220 1.220 27 H -0.230 1.230 28 H -0.183 1.183 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.126 0.874 34 H 0.151 0.849 35 H 0.114 0.886 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.114 0.886 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.148 0.852 42 H 0.098 0.902 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.051 0.949 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.368 -2.985 -10.819 15.975 hybrid contribution -0.949 1.038 -0.044 1.407 sum 10.419 -1.947 -10.862 15.177 Atomic orbital electron populations 1.23057 0.77552 1.02354 1.02356 1.86437 1.22563 1.34776 1.85559 1.23243 0.91745 0.81182 0.73735 1.90696 1.66415 1.35624 1.41662 1.21444 0.88438 0.99044 1.04446 1.19072 0.87482 0.90964 0.91104 0.93107 1.19942 0.96882 0.96224 0.94527 1.21011 0.92390 1.04105 1.01541 1.18036 0.90690 0.95595 0.91223 1.86125 1.35914 1.57284 1.43182 1.23020 0.94968 0.94182 0.94703 1.18070 0.82714 0.98345 0.96145 1.86128 1.15905 1.64607 1.55897 1.22998 0.95842 0.93777 0.94106 1.21106 0.95822 1.03438 0.99400 1.19323 0.91433 0.97203 0.96455 1.21041 0.99059 0.97746 0.96019 1.21293 0.89412 0.87974 0.99112 1.44236 1.47493 1.22136 1.17516 1.18368 1.10947 0.92259 1.16225 0.90830 1.25243 0.96804 0.97681 0.95759 1.69985 1.34737 1.39422 1.09438 0.87226 0.80322 0.84856 0.78920 1.22035 1.22965 1.18269 0.91729 0.92844 0.89241 0.89346 0.87402 0.84940 0.88611 0.92693 0.92832 0.88646 0.92915 0.92812 0.85225 0.90200 0.91985 0.91117 0.94863 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 10.56 101.05 1.07 1.70 16 2 O -0.37 -6.85 10.57 -39.27 -0.41 -7.27 16 3 C 0.46 9.34 6.05 36.00 0.22 9.56 16 4 O -0.46 -11.00 13.58 -18.75 -0.25 -11.26 16 5 C -0.10 -1.70 4.62 -27.88 -0.13 -1.83 16 6 C 0.22 4.30 2.53 -68.92 -0.17 4.13 16 7 H 0.05 1.05 7.90 -51.93 -0.41 0.64 16 8 C -0.07 -1.28 5.44 -104.51 -0.57 -1.85 16 9 C -0.17 -2.57 8.04 -39.34 -0.32 -2.89 16 10 C 0.09 1.38 6.69 -39.22 -0.26 1.12 16 11 O -0.31 -4.46 10.30 -33.94 -0.35 -4.81 16 12 C 0.03 0.26 9.82 101.05 0.99 1.25 16 13 C 0.09 1.43 6.69 -39.23 -0.26 1.16 16 14 O -0.31 -4.48 10.30 -33.93 -0.35 -4.83 16 15 C 0.03 0.28 9.81 101.05 0.99 1.27 16 16 C -0.18 -2.68 8.60 -39.30 -0.34 -3.02 16 17 C -0.04 -0.74 5.76 -104.56 -0.60 -1.35 16 18 C -0.10 -1.75 5.86 -28.04 -0.16 -1.91 16 19 C 0.15 3.13 4.33 -3.77 -0.02 3.12 16 20 N -0.59 -13.60 2.49 -166.33 -0.41 -14.01 16 21 C -0.25 -6.69 6.52 -15.06 -0.10 -6.79 16 22 H 0.07 2.10 5.81 -52.49 -0.31 1.80 16 23 C 0.05 1.31 4.99 -17.43 -0.09 1.22 16 24 N -0.89 -26.97 13.97 55.49 0.78 -26.19 16 25 Si 0.86 22.44 26.43 -169.99 -4.49 17.94 16 26 H -0.29 -8.07 7.11 56.52 0.40 -7.67 16 27 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 28 H -0.26 -6.37 4.98 56.52 0.28 -6.09 16 29 H 0.06 1.14 8.13 -51.93 -0.42 0.72 16 30 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.09 1.22 6.35 -51.93 -0.33 0.89 16 33 H 0.11 2.01 7.46 -51.93 -0.39 1.63 16 34 H 0.13 1.67 4.82 -52.49 -0.25 1.42 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.49 7.67 -51.92 -0.40 0.10 16 37 H 0.05 0.48 7.67 -51.93 -0.40 0.08 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.47 7.67 -51.93 -0.40 0.07 16 40 H 0.05 0.49 7.65 -51.93 -0.40 0.09 16 41 H 0.13 1.62 6.26 -52.49 -0.33 1.29 16 42 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 43 H 0.06 0.92 8.10 -51.93 -0.42 0.50 16 44 H 0.07 1.61 5.51 -51.93 -0.29 1.32 16 45 H 0.03 0.70 7.18 -51.93 -0.37 0.33 16 46 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 360.34 15.07 5.43 5.43 Total: -1.00 -34.38 360.34 -6.30 -40.68 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -6.48 Total: -0.59 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: 0.25 Total: 4.90 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.36 Total: -40.20 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -1.37 Total: -28.16 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.49 Total: 17.94 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.38 -6.30 -40.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052659103.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.054 kcal (2) G-P(sol) polarization free energy of solvation -34.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds