Wall clock time and date at job start Tue Mar 31 2020 05:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47404 * 2 1 4 4 C 1.50698 * 109.47303 * 239.99438 * 2 1 3 5 5 H 1.08003 * 120.00034 * 239.99794 * 4 2 1 6 6 C 1.37878 * 119.99965 * 60.00599 * 4 2 1 7 7 N 1.31520 * 119.99665 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00289 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47226 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47304 * 119.99694 * 8 6 4 11 11 H 1.48504 * 109.46957 * 239.99637 * 8 6 4 12 12 N 1.46907 * 109.46753 * 119.99937 * 2 1 3 13 13 C 1.46900 * 110.99707 * 299.99602 * 12 2 1 14 14 C 1.53244 * 109.33482 * 187.25684 * 13 12 2 15 15 N 1.47080 * 108.52229 * 306.16939 * 14 13 12 16 16 C 1.34775 * 120.88580 * 231.18862 * 15 14 13 17 17 O 1.21288 * 119.99863 * 0.02562 * 16 15 14 18 18 C 1.50699 * 120.00245 * 180.02562 * 16 15 14 19 19 C 1.50697 * 109.46905 * 179.97438 * 18 16 15 20 20 C 1.38247 * 119.98676 * 90.00343 * 19 18 16 21 21 C 1.38216 * 120.01497 * 179.97438 * 20 19 18 22 22 C 1.38357 * 119.98603 * 0.02562 * 21 20 19 23 23 Cl 1.73599 * 120.01134 * 180.02562 * 22 21 20 24 24 C 1.38347 * 119.97107 * 0.28224 * 22 21 20 25 25 C 1.38219 * 119.98927 * 359.42057 * 24 22 21 26 26 C 1.47083 * 118.23369 * 51.46538 * 15 14 13 27 27 C 1.46896 * 111.00417 * 64.30578 * 12 2 1 28 28 H 1.08997 * 109.47295 * 60.00711 * 1 2 3 29 29 H 1.09004 * 109.46762 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47240 * 300.00071 * 1 2 3 31 31 H 0.96993 * 119.99434 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.48985 * 67.30525 * 13 12 2 33 33 H 1.08995 * 109.51640 * 307.22825 * 13 12 2 34 34 H 1.09004 * 109.62562 * 186.46327 * 14 13 12 35 35 H 1.08997 * 109.79172 * 65.98291 * 14 13 12 36 36 H 1.08996 * 109.47172 * 59.99688 * 18 16 15 37 37 H 1.09004 * 109.46971 * 299.99969 * 18 16 15 38 38 H 1.08003 * 119.99321 * 359.97223 * 20 19 18 39 39 H 1.08003 * 120.00776 * 179.97438 * 21 20 19 40 40 H 1.08000 * 120.00645 * 179.69150 * 24 22 21 41 41 H 1.07997 * 119.99421 * 180.29781 * 25 24 22 42 42 H 1.08997 * 109.62762 * 68.24912 * 26 15 14 43 43 H 1.08999 * 109.62567 * 188.83282 * 26 15 14 44 44 H 1.09008 * 109.48972 * 292.70696 * 27 12 2 45 45 H 1.08998 * 109.49692 * 52.75537 * 27 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3214 -1.1205 -4.0078 9 1 3.1465 -2.2873 -3.6036 10 1 1.1662 -1.5869 -4.8159 11 1 3.1467 -0.1876 -4.8164 12 7 2.0196 -0.6925 1.1995 13 6 1.5486 -0.0263 2.4211 14 6 2.2236 -0.6647 3.6397 15 7 1.9927 -2.1166 3.5946 16 6 1.5007 -2.7724 4.6643 17 8 1.2417 -2.1650 5.6817 18 6 1.2723 -4.2604 4.5963 19 6 0.7222 -4.7448 5.9130 20 6 -0.6442 -4.7779 6.1208 21 6 -1.1494 -5.2225 7.3280 22 6 -0.2873 -5.6341 8.3289 23 17 -0.9212 -6.1933 9.8452 24 6 1.0801 -5.5947 8.1227 25 6 1.5840 -5.1557 6.9128 26 6 2.3187 -2.8347 2.3531 27 6 1.6345 -2.1100 1.1832 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 0.7084 1.1607 -3.4844 32 1 0.4676 -0.1394 2.5033 33 1 1.8014 1.0331 2.3787 34 1 1.7939 -0.2538 4.5534 35 1 3.2945 -0.4633 3.6161 36 1 2.2168 -4.7639 4.3903 37 1 0.5609 -4.4829 3.8010 38 1 -1.3170 -4.4562 5.3396 39 1 -2.2169 -5.2480 7.4904 40 1 1.7537 -5.9111 8.9054 41 1 2.6513 -5.1295 6.7500 42 1 3.3985 -2.8378 2.2047 43 1 1.9519 -3.8592 2.4157 44 1 0.5522 -2.1940 1.2826 45 1 1.9494 -2.5617 0.2425 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053610150.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:03 Heat of formation + Delta-G solvation = -5.797144 kcal Electronic energy + Delta-G solvation = -26463.596377 eV Core-core repulsion = 22699.881762 eV Total energy + Delta-G solvation = -3763.714615 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.135 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.36860 -39.27790 -37.78259 -36.70437 -34.94891 -33.08233 -32.46964 -31.31193 -30.81947 -29.36110 -27.74459 -25.72602 -25.31045 -23.26173 -23.10701 -22.29709 -21.32525 -19.88954 -18.39888 -17.35226 -17.09297 -16.32540 -16.07407 -15.85971 -15.31460 -15.05582 -14.92734 -14.38130 -14.01756 -13.87360 -13.83686 -13.77397 -13.61140 -13.30061 -12.86900 -12.73246 -12.23318 -11.97526 -11.83609 -11.62708 -11.60321 -11.48924 -11.31590 -11.19316 -11.05999 -11.00992 -10.79628 -10.65040 -10.39012 -10.07817 -9.91996 -9.70831 -9.26525 -8.95320 -8.78935 -8.50693 -8.45757 -7.28014 -6.09835 -4.14782 0.87362 1.07163 1.88202 2.67453 3.03554 3.23595 3.32248 3.34731 3.46499 4.32953 4.40257 4.47936 4.62691 4.63708 4.79344 4.92976 5.05350 5.21396 5.23589 5.26874 5.30848 5.38893 5.48020 5.51580 5.64638 5.68893 5.75413 5.85070 5.95332 5.97611 6.02588 6.27136 6.28955 6.43387 6.46169 6.54285 6.63086 6.71412 6.78191 7.03301 7.39323 7.51634 7.62934 7.71256 7.99169 8.23403 8.27284 8.47227 8.90622 9.50867 10.97119 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.026914 B = 0.002102 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.109106 B =13314.301401 C =13509.428782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.211 3.789 3 H 0.042 0.958 4 C -0.505 4.505 5 H 0.064 0.936 6 C 0.059 3.941 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.284 1.284 12 N -0.530 5.530 13 C 0.040 3.960 14 C 0.118 3.882 15 N -0.607 5.607 16 C 0.515 3.485 17 O -0.544 6.544 18 C -0.105 4.105 19 C -0.055 4.055 20 C -0.092 4.092 21 C -0.109 4.109 22 C -0.037 4.037 23 Cl -0.077 7.077 24 C -0.109 4.109 25 C -0.093 4.093 26 C 0.106 3.894 27 C 0.047 3.953 28 H 0.088 0.912 29 H 0.027 0.973 30 H 0.009 0.991 31 H 0.260 0.740 32 H 0.032 0.968 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.029 0.971 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.646 -13.243 17.314 21.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.105 3.895 3 H 0.060 0.940 4 C -0.543 4.543 5 H 0.082 0.918 6 C -0.143 4.143 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.210 1.210 12 N -0.255 5.255 13 C -0.089 4.089 14 C -0.004 4.004 15 N -0.340 5.340 16 C 0.302 3.698 17 O -0.421 6.421 18 C -0.145 4.145 19 C -0.056 4.056 20 C -0.111 4.111 21 C -0.127 4.127 22 C -0.063 4.063 23 Cl -0.049 7.049 24 C -0.128 4.128 25 C -0.111 4.111 26 C -0.017 4.017 27 C -0.082 4.082 28 H 0.107 0.893 29 H 0.046 0.954 30 H 0.028 0.972 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.148 0.852 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.047 0.953 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.398 -12.816 17.836 21.967 hybrid contribution -0.721 -0.386 -0.909 1.223 sum -1.119 -13.202 16.926 21.495 Atomic orbital electron populations 1.22392 1.00799 0.99175 1.00646 1.19318 0.89761 0.94719 0.85694 0.94039 1.21139 1.30877 1.12606 0.89679 0.91762 1.24946 0.95137 0.95091 0.99096 1.69895 1.36767 1.22956 1.23421 0.86467 0.78521 0.79641 0.82909 1.19721 1.21179 1.21048 1.62299 1.59444 1.01290 1.02429 1.22384 0.97106 0.98782 0.90653 1.21754 1.00797 0.78925 0.98952 1.48245 1.63323 1.09113 1.13353 1.20385 0.77197 0.89153 0.83043 1.90702 1.51782 1.69119 1.30529 1.20742 1.03755 0.93621 0.96357 1.19440 0.93529 0.97519 0.95069 1.20984 0.94817 0.98284 0.96973 1.21001 0.99849 0.99402 0.92489 1.20913 0.93860 1.03448 0.88119 1.98364 1.87188 1.88036 1.31270 1.20984 0.93202 1.00614 0.98011 1.20951 0.99889 0.98038 0.92249 1.22175 1.01045 0.95107 0.83352 1.22449 0.96963 0.90934 0.97899 0.89333 0.95431 0.97249 0.92967 0.95011 0.90334 0.89594 0.91101 0.87679 0.87605 0.85142 0.84967 0.85001 0.85193 0.90580 0.90284 0.95277 0.88202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.94 8.29 37.16 0.31 -3.63 16 2 C 0.21 4.96 2.41 -68.86 -0.17 4.79 16 3 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 4 C -0.50 -12.80 7.84 -34.44 -0.27 -13.07 16 5 H 0.06 1.60 6.40 -52.48 -0.34 1.27 16 6 C 0.06 1.54 5.30 -17.82 -0.09 1.44 16 7 N -0.89 -24.37 11.32 55.43 0.63 -23.74 16 8 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 9 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 12 N -0.53 -10.33 4.64 -227.44 -1.06 -11.39 16 13 C 0.04 0.69 4.99 -3.70 -0.02 0.67 16 14 C 0.12 1.78 6.60 -3.60 -0.02 1.76 16 15 N -0.61 -8.51 3.00 -172.18 -0.52 -9.03 16 16 C 0.51 7.08 7.70 -10.99 -0.08 6.99 16 17 O -0.54 -9.36 15.49 5.55 0.09 -9.27 16 18 C -0.11 -1.03 4.19 -29.04 -0.12 -1.15 16 19 C -0.05 -0.58 4.37 -104.62 -0.46 -1.04 16 20 C -0.09 -0.95 9.70 -39.59 -0.38 -1.34 16 21 C -0.11 -1.08 9.83 -39.55 -0.39 -1.47 16 22 C -0.04 -0.38 6.32 -39.50 -0.25 -0.62 16 23 Cl -0.08 -0.73 28.96 -51.86 -1.50 -2.23 16 24 C -0.11 -1.06 9.83 -39.55 -0.39 -1.44 16 25 C -0.09 -0.92 9.70 -39.59 -0.38 -1.30 16 26 C 0.11 1.37 6.53 -3.36 -0.02 1.34 16 27 C 0.05 0.79 4.89 -3.47 -0.02 0.77 16 28 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 29 H 0.03 0.61 6.67 -51.93 -0.35 0.26 16 30 H 0.01 0.19 6.57 -51.93 -0.34 -0.16 16 31 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 32 H 0.03 0.58 6.72 -51.93 -0.35 0.23 16 33 H 0.08 1.34 8.11 -51.93 -0.42 0.92 16 34 H 0.09 1.32 7.06 -51.93 -0.37 0.95 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.11 0.79 7.93 -51.93 -0.41 0.38 16 37 H 0.11 0.88 7.62 -51.93 -0.40 0.48 16 38 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 39 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 40 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 41 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.08 0.76 6.02 -51.93 -0.31 0.45 16 44 H 0.03 0.52 6.80 -51.92 -0.35 0.17 16 45 H 0.10 1.82 5.98 -51.93 -0.31 1.51 16 LS Contribution 369.68 15.07 5.57 5.57 Total: -1.00 -29.59 369.68 -10.93 -40.52 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -6.35 Total: 1.62 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -2.76 Total: -7.29 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: -0.95 Total: -44.15 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.09 Total: -9.27 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.50 Total: -2.23 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.59 -10.93 -40.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053610150.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.719 kcal (2) G-P(sol) polarization free energy of solvation -29.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds