Wall clock time and date at job start Tue Mar 31 2020 04:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00021 * 2 1 4 4 H 1.48497 * 109.47386 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47136 * 300.00228 * 3 2 1 6 6 H 1.48507 * 109.46925 * 60.00411 * 3 2 1 7 7 C 1.38817 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99797 * 156.77200 * 7 2 1 9 9 N 1.36931 * 120.00125 * 336.77418 * 7 2 1 10 10 C 1.46495 * 120.00161 * 145.89605 * 9 7 2 11 11 C 1.50700 * 109.47012 * 269.51334 * 10 9 7 12 12 N 1.30379 * 126.19040 * 90.02288 * 11 10 9 13 13 N 1.28663 * 109.53222 * 179.97438 * 12 11 10 14 14 C 1.31242 * 109.24287 * 0.02562 * 13 12 11 15 15 C 1.47846 * 126.37523 * 179.97438 * 14 13 12 16 16 C 1.39553 * 120.14142 * 179.69395 * 15 14 13 17 17 C 1.37972 * 119.85772 * 179.72746 * 16 15 14 18 18 C 1.38355 * 120.13778 * 0.57247 * 17 16 15 19 19 C 1.38360 * 120.28828 * 359.70536 * 18 17 16 20 20 C 1.37955 * 120.14561 * 359.97438 * 19 18 17 21 21 O 1.34410 * 126.18532 * 269.71632 * 11 10 9 22 22 C 1.46508 * 119.99688 * 325.89454 * 9 7 2 23 23 C 1.50703 * 109.46928 * 269.99721 * 22 9 7 24 24 C 1.38235 * 119.99861 * 90.00284 * 23 22 9 25 25 C 1.38231 * 120.00012 * 179.97438 * 24 23 22 26 26 C 1.38230 * 120.00151 * 0.09199 * 25 24 23 27 27 C 1.38231 * 119.99924 * 359.86859 * 26 25 24 28 28 C 1.38232 * 120.00080 * 269.98087 * 23 22 9 29 29 H 0.96997 * 119.99572 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47080 * 29.51011 * 10 9 7 31 31 H 1.09001 * 109.47172 * 149.51476 * 10 9 7 32 32 H 1.08004 * 120.07443 * 0.02594 * 16 15 14 33 33 H 1.08001 * 119.93084 * 180.29944 * 17 16 15 34 34 H 1.07996 * 119.85396 * 179.72159 * 18 17 16 35 35 H 1.07998 * 119.92482 * 180.02562 * 19 18 17 36 36 H 1.08004 * 120.07276 * 180.02562 * 20 19 18 37 37 H 1.08996 * 109.46597 * 150.00270 * 22 9 7 38 38 H 1.08993 * 109.47082 * 29.99992 * 22 9 7 39 39 H 1.08008 * 119.99631 * 359.70256 * 24 23 22 40 40 H 1.07998 * 119.99927 * 179.97438 * 25 24 23 41 41 H 1.08001 * 120.00348 * 179.97438 * 26 25 24 42 42 H 1.08004 * 120.00131 * 180.02562 * 27 26 25 43 43 H 1.08000 * 120.00102 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0247 -1.2399 -0.3694 9 7 1.4089 -2.3402 0.4666 10 6 1.7171 -3.6354 -0.1446 11 6 0.7515 -3.9020 -1.2705 12 7 0.9132 -3.5648 -2.5195 13 7 -0.1060 -3.9493 -3.2043 14 6 -0.9600 -4.5495 -2.4088 15 6 -2.2592 -5.1368 -2.8002 16 6 -3.0663 -5.7532 -1.8430 17 6 -4.2801 -6.2944 -2.2137 18 6 -4.6923 -6.2374 -3.5332 19 6 -3.8941 -5.6328 -4.4880 20 6 -2.6812 -5.0821 -4.1293 21 8 -0.4296 -4.5356 -1.1696 22 6 0.4572 -2.2625 1.5778 23 6 1.1947 -2.4189 2.8827 24 6 1.6911 -1.3050 3.5337 25 6 2.3671 -1.4484 4.7309 26 6 2.5484 -2.7056 5.2761 27 6 2.0513 -3.8193 4.6255 28 6 1.3744 -3.6760 3.4287 29 1 -0.4849 0.8401 0.0004 30 1 2.7348 -3.6200 -0.5348 31 1 1.6272 -4.4216 0.6050 32 1 -2.7437 -5.8023 -0.8135 33 1 -4.9079 -6.7674 -1.4730 34 1 -5.6412 -6.6665 -3.8190 35 1 -4.2217 -5.5913 -5.5163 36 1 -2.0593 -4.6100 -4.8755 37 1 -0.2810 -3.0584 1.4800 38 1 -0.0459 -1.2958 1.5583 39 1 1.5545 -0.3233 3.1048 40 1 2.7553 -0.5782 5.2394 41 1 3.0769 -2.8176 6.2113 42 1 2.1926 -4.8016 5.0516 43 1 0.9859 -4.5461 2.9204 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054393170.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:06 Heat of formation + Delta-G solvation = 112.704003 kcal Electronic energy + Delta-G solvation = -27596.485024 eV Core-core repulsion = 23802.227422 eV Total energy + Delta-G solvation = -3794.257602 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.30900 -39.06706 -38.70856 -36.00308 -35.37627 -32.75227 -31.81903 -31.15364 -31.05511 -30.33625 -29.19474 -26.55711 -25.77515 -23.92077 -23.15243 -22.24141 -21.97313 -21.34348 -21.16656 -20.23514 -17.64679 -17.18479 -16.57047 -16.28754 -15.98728 -15.55381 -15.22873 -14.78429 -14.60631 -14.37175 -14.06186 -13.90837 -13.78283 -13.54434 -13.52190 -12.92540 -12.88471 -12.52481 -12.05695 -11.82058 -11.65073 -11.59244 -11.29449 -11.12664 -11.06294 -11.02831 -10.86151 -10.76490 -10.37574 -10.21902 -10.19691 -10.08799 -9.81622 -9.06856 -8.79150 -8.39457 -8.24620 -8.10895 -7.06581 -6.08453 -3.61837 0.73654 1.29685 1.89682 1.94473 2.19778 2.87192 3.14525 3.25059 3.34661 3.38096 3.80790 4.24776 4.32351 4.38692 4.77581 4.84133 4.97587 5.08113 5.22088 5.29874 5.33331 5.36746 5.38474 5.40230 5.53335 5.68950 5.70974 5.78403 5.96106 6.01983 6.04514 6.08909 6.12510 6.29163 6.34137 6.35612 6.38157 6.44198 6.48528 6.59111 6.63962 6.80087 6.96512 7.03658 7.23688 7.44998 7.59348 7.61887 8.16580 8.83355 9.06191 9.43582 9.96023 10.93005 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011501 B = 0.003485 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.962995 B = 8031.959641 C = 9522.660110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.020 3.980 3 Si 0.902 3.098 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.284 1.284 7 C -0.263 4.263 8 H 0.076 0.924 9 N -0.546 5.546 10 C 0.221 3.779 11 C 0.180 3.820 12 N -0.293 5.293 13 N -0.272 5.272 14 C 0.160 3.840 15 C 0.000 4.000 16 C -0.091 4.091 17 C -0.121 4.121 18 C -0.110 4.110 19 C -0.121 4.121 20 C -0.077 4.077 21 O -0.228 6.228 22 C 0.166 3.834 23 C -0.070 4.070 24 C -0.094 4.094 25 C -0.127 4.127 26 C -0.139 4.139 27 C -0.129 4.129 28 C -0.122 4.122 29 H 0.260 0.740 30 H 0.099 0.901 31 H 0.072 0.928 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.130 0.870 36 H 0.138 0.862 37 H 0.038 0.962 38 H 0.112 0.888 39 H 0.120 0.880 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.361 -11.312 2.209 12.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.182 4.182 3 Si 0.730 3.270 4 H -0.195 1.195 5 H -0.213 1.213 6 H -0.210 1.210 7 C -0.393 4.393 8 H 0.093 0.907 9 N -0.262 5.262 10 C 0.091 3.909 11 C -0.032 4.032 12 N -0.141 5.141 13 N -0.121 5.121 14 C -0.048 4.048 15 C -0.002 4.002 16 C -0.111 4.111 17 C -0.139 4.139 18 C -0.128 4.128 19 C -0.139 4.139 20 C -0.096 4.096 21 O -0.107 6.107 22 C 0.041 3.959 23 C -0.073 4.073 24 C -0.113 4.113 25 C -0.145 4.145 26 C -0.158 4.158 27 C -0.147 4.147 28 C -0.141 4.141 29 H 0.070 0.930 30 H 0.117 0.883 31 H 0.090 0.910 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.148 0.852 36 H 0.155 0.845 37 H 0.056 0.944 38 H 0.130 0.870 39 H 0.138 0.862 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.890 -10.627 1.153 11.754 hybrid contribution -0.247 0.583 0.972 1.160 sum -5.136 -10.044 2.125 11.480 Atomic orbital electron populations 1.69991 1.05802 1.26487 1.49307 1.25213 0.95002 0.99264 0.98766 0.86243 0.80068 0.83116 0.77598 1.19522 1.21298 1.21028 1.19257 0.95318 0.84817 1.39875 0.90670 1.44261 1.49738 1.02096 1.30150 1.20272 0.92929 0.90467 0.87268 1.31026 0.84590 0.89651 0.97935 1.74335 1.17655 1.19820 1.02243 1.74541 0.98899 1.11038 1.27593 1.25198 0.97680 1.02527 0.79400 1.17277 0.88428 1.00068 0.94393 1.21284 0.94071 0.96440 0.99319 1.21053 0.96021 1.00323 0.96513 1.21305 0.99639 0.98680 0.93215 1.21076 0.94170 0.98735 0.99930 1.21207 0.96280 0.97614 0.94510 1.84843 1.31993 1.60604 1.33271 1.20237 0.89782 1.04305 0.81599 1.20965 0.97269 0.92332 0.96696 1.21122 0.96885 0.99250 0.94054 1.21101 0.99915 0.96915 0.96604 1.20930 1.01782 0.93018 1.00026 1.20988 0.99607 0.97948 0.96162 1.21050 1.00085 0.97024 0.95923 0.93004 0.88258 0.90968 0.85173 0.85381 0.85696 0.85234 0.84451 0.94396 0.87028 0.86191 0.87022 0.87217 0.87143 0.87051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.97 11.34 55.49 0.63 -23.34 16 2 C 0.02 0.51 4.94 -17.43 -0.09 0.43 16 3 Si 0.90 20.68 29.61 -169.99 -5.03 15.65 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.26 -6.70 9.48 -15.06 -0.14 -6.84 16 8 H 0.08 1.93 7.93 -52.49 -0.42 1.51 16 9 N -0.55 -12.49 2.42 -175.98 -0.43 -12.91 16 10 C 0.22 4.42 6.29 -5.20 -0.03 4.38 16 11 C 0.18 3.94 8.05 -12.90 -0.10 3.84 16 12 N -0.29 -6.97 12.22 32.58 0.40 -6.57 16 13 N -0.27 -6.07 11.92 32.07 0.38 -5.69 16 14 C 0.16 3.21 7.99 -13.87 -0.11 3.10 16 15 C 0.00 0.00 5.87 -104.98 -0.62 -0.61 16 16 C -0.09 -1.23 9.73 -39.19 -0.38 -1.61 16 17 C -0.12 -1.28 10.03 -39.64 -0.40 -1.68 16 18 C -0.11 -1.06 10.04 -39.49 -0.40 -1.46 16 19 C -0.12 -1.29 10.03 -39.64 -0.40 -1.69 16 20 C -0.08 -1.06 9.70 -39.19 -0.38 -1.44 16 21 O -0.23 -4.72 10.67 4.04 0.04 -4.68 16 22 C 0.17 3.61 5.42 -5.19 -0.03 3.58 16 23 C -0.07 -1.34 5.46 -104.62 -0.57 -1.91 16 24 C -0.09 -1.78 9.70 -39.59 -0.38 -2.16 16 25 C -0.13 -2.05 10.05 -39.59 -0.40 -2.44 16 26 C -0.14 -2.04 10.05 -39.59 -0.40 -2.44 16 27 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 28 C -0.12 -2.02 9.70 -39.58 -0.38 -2.40 16 29 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.10 1.89 8.04 -51.93 -0.42 1.47 16 31 H 0.07 1.22 8.08 -51.93 -0.42 0.80 16 32 H 0.13 1.69 7.94 -52.48 -0.42 1.27 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 35 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 36 H 0.14 1.90 7.87 -52.48 -0.41 1.49 16 37 H 0.04 0.80 8.02 -51.93 -0.42 0.38 16 38 H 0.11 2.78 5.28 -51.93 -0.27 2.50 16 39 H 0.12 2.42 8.06 -52.48 -0.42 2.00 16 40 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 41 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 42 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 43 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 378.00 15.07 5.70 5.70 Total: -1.00 -30.64 378.00 -9.21 -39.85 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -5.29 Total: 5.65 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -5.61 Total: -13.66 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: 0.98 Total: -48.51 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: 0.04 Total: -4.68 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.64 -9.21 -39.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054393170.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.553 kcal (2) G-P(sol) polarization free energy of solvation -30.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds