Wall clock time and date at job start Tue Mar 31 2020 05:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39762 * 120.07588 * 211.79437 * 3 2 1 5 5 C 1.38038 * 120.14261 * 179.97438 * 4 3 2 6 6 C 1.38107 * 120.30743 * 359.74579 * 5 4 3 7 7 C 1.39671 * 120.15078 * 0.50887 * 6 5 4 8 8 C 1.47835 * 120.06710 * 179.76933 * 7 6 5 9 9 O 1.21562 * 119.99745 * 179.72750 * 8 7 6 10 10 N 1.34774 * 120.00404 * 359.72443 * 8 7 6 11 11 C 1.39842 * 119.99954 * 185.28954 * 10 8 7 12 12 C 1.38958 * 120.04000 * 213.32351 * 11 10 8 13 13 C 1.38118 * 120.03506 * 180.02562 * 12 11 10 14 14 C 1.38212 * 120.12873 * 359.75331 * 13 12 11 15 15 C 1.38770 * 120.08814 * 0.50480 * 14 13 12 16 16 O 1.35897 * 120.02225 * 179.76940 * 15 14 13 17 17 C 1.42903 * 116.99773 * 359.72581 * 16 15 14 18 18 C 1.53000 * 109.46838 * 179.97438 * 17 16 15 19 19 C 1.50708 * 109.46660 * 179.97438 * 18 17 16 20 20 H 1.07995 * 120.00170 * 0.02562 * 19 18 17 21 21 C 1.37882 * 119.99580 * 179.97438 * 19 18 17 22 22 N 1.31518 * 119.99741 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99998 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47494 * 89.99951 * 23 21 19 25 25 H 1.48508 * 109.46915 * 209.99953 * 23 21 19 26 26 H 1.48497 * 109.46887 * 329.99355 * 23 21 19 27 27 C 1.38620 * 119.96090 * 359.48882 * 15 14 13 28 28 C 1.39345 * 119.85859 * 359.49090 * 7 6 5 29 29 H 1.07998 * 119.92690 * 359.96075 * 4 3 2 30 30 H 1.07999 * 119.85262 * 180.02562 * 5 4 3 31 31 H 1.07996 * 119.92208 * 180.28005 * 6 5 4 32 32 H 0.97004 * 119.99698 * 5.28732 * 10 8 7 33 33 H 1.08000 * 119.98148 * 0.04812 * 12 11 10 34 34 H 1.08006 * 119.93296 * 179.97438 * 13 12 11 35 35 H 1.08001 * 119.95978 * 180.27144 * 14 13 12 36 36 H 1.08999 * 109.46706 * 299.99612 * 17 16 15 37 37 H 1.09001 * 109.47108 * 59.99830 * 17 16 15 38 38 H 1.08999 * 109.47273 * 299.99409 * 18 17 16 39 39 H 1.09001 * 109.47292 * 60.00087 * 18 17 16 40 40 H 0.96992 * 119.99468 * 179.97438 * 22 21 19 41 41 H 1.08004 * 120.06797 * 180.22879 * 27 15 14 42 42 H 1.07998 * 120.14978 * 180.22503 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2679 1.0289 0.6372 5 6 4.6483 1.0306 0.6385 6 6 5.3471 0.0152 0.0157 7 6 4.6604 -1.0158 -0.6295 8 6 5.4102 -2.0992 -1.2999 9 8 4.8112 -2.9985 -1.8568 10 7 6.7579 -2.0898 -1.2938 11 6 7.4672 -3.0514 -2.0203 12 6 8.6866 -3.5208 -1.5475 13 6 9.3873 -4.4702 -2.2654 14 6 8.8756 -4.9595 -3.4524 15 6 7.6609 -4.4906 -3.9321 16 8 7.1613 -4.9693 -5.1018 17 6 7.9425 -5.9494 -5.7881 18 6 7.2240 -6.3658 -7.0731 19 6 8.0483 -7.3990 -7.7972 20 1 8.9900 -7.7263 -7.3821 21 6 7.5994 -7.9273 -8.9890 22 7 8.3185 -8.8294 -9.6207 23 14 5.9701 -7.3618 -9.7066 24 1 6.1992 -6.1952 -10.5963 25 1 5.3626 -8.4687 -10.4883 26 1 5.0530 -6.9721 -8.6056 27 6 6.9545 -3.5379 -3.2146 28 6 3.2669 -1.0242 -0.6348 29 1 2.7276 1.8240 1.1295 30 1 5.1845 1.8273 1.1327 31 1 6.4270 0.0203 0.0244 32 1 7.2359 -1.4159 -0.7855 33 1 9.0866 -3.1432 -0.6181 34 1 10.3352 -4.8335 -1.8966 35 1 9.4237 -5.7051 -4.0093 36 1 8.9169 -5.5287 -6.0362 37 1 8.0756 -6.8214 -5.1477 38 1 6.2498 -6.7867 -6.8246 39 1 7.0906 -5.4940 -7.7136 40 1 8.0025 -9.2012 -10.4589 41 1 6.0071 -3.1744 -3.5845 42 1 2.7312 -1.8210 -1.1291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055568071.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:25 Heat of formation + Delta-G solvation = 11.549211 kcal Electronic energy + Delta-G solvation = -25982.619916 eV Core-core repulsion = 22086.257251 eV Total energy + Delta-G solvation = -3896.362665 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.126 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.17951 -39.93634 -39.05814 -37.30199 -36.86320 -34.87942 -33.32499 -32.34396 -31.91949 -31.12960 -29.80291 -29.11825 -25.40118 -24.92932 -24.44043 -22.89645 -22.04986 -21.37231 -20.35685 -19.60536 -18.49886 -17.24808 -16.92811 -16.82204 -16.33928 -15.89282 -15.75253 -15.49602 -15.40428 -15.09054 -14.81518 -14.48022 -14.43050 -14.10942 -13.67054 -13.52533 -13.32045 -13.25659 -12.98995 -12.78306 -12.57175 -12.50301 -12.02738 -11.95104 -11.85148 -11.60451 -10.97919 -10.91377 -10.48872 -10.25782 -10.12704 -9.95788 -9.80495 -9.77259 -9.71394 -9.33627 -8.61450 -8.37612 -7.93139 -6.12786 -4.13587 -0.08867 0.32444 1.28157 1.54035 2.06291 2.12116 2.55605 2.70934 3.26002 3.28835 3.30131 3.37491 3.44047 3.68956 3.87498 4.01769 4.10841 4.26029 4.36341 4.40507 4.64966 4.83073 4.91846 5.08452 5.15111 5.21542 5.27663 5.33834 5.42388 5.50588 5.50950 5.58451 5.74059 5.91222 5.92574 5.94204 6.16142 6.24217 6.40460 6.45917 6.60605 6.82807 6.95113 7.01786 7.10283 7.24636 7.63106 7.70436 7.90522 8.39311 8.87768 9.47708 10.99630 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.013338 B = 0.002117 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.747863 B =13222.485109 C =15095.929771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C 0.251 3.749 3 C -0.032 4.032 4 C -0.045 4.045 5 C -0.124 4.124 6 C -0.057 4.057 7 C -0.131 4.131 8 C 0.555 3.445 9 O -0.500 6.500 10 N -0.665 5.665 11 C 0.176 3.824 12 C -0.192 4.192 13 C -0.060 4.060 14 C -0.222 4.222 15 C 0.164 3.836 16 O -0.316 6.316 17 C 0.072 3.928 18 C -0.010 4.010 19 C -0.526 4.526 20 H 0.075 0.925 21 C 0.072 3.928 22 N -0.898 5.898 23 Si 0.880 3.120 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.262 1.262 27 C -0.162 4.162 28 C -0.010 4.010 29 H 0.140 0.860 30 H 0.143 0.857 31 H 0.136 0.864 32 H 0.410 0.590 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.134 0.866 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.028 0.972 39 H 0.023 0.977 40 H 0.266 0.734 41 H 0.140 0.860 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.625 22.892 25.684 34.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.080 5.080 2 C -0.064 4.064 3 C -0.035 4.035 4 C -0.066 4.066 5 C -0.142 4.142 6 C -0.077 4.077 7 C -0.134 4.134 8 C 0.343 3.657 9 O -0.374 6.374 10 N -0.311 5.311 11 C 0.082 3.918 12 C -0.213 4.213 13 C -0.079 4.079 14 C -0.241 4.241 15 C 0.116 3.884 16 O -0.229 6.229 17 C -0.002 4.002 18 C -0.047 4.047 19 C -0.564 4.564 20 H 0.093 0.907 21 C -0.130 4.130 22 N -0.536 5.536 23 Si 0.707 3.293 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.187 1.187 27 C -0.183 4.183 28 C -0.031 4.031 29 H 0.157 0.843 30 H 0.161 0.839 31 H 0.154 0.846 32 H 0.247 0.753 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.152 0.848 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.047 0.953 39 H 0.042 0.958 40 H 0.075 0.925 41 H 0.158 0.842 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.049 22.188 25.002 33.672 hybrid contribution 0.179 0.386 -0.201 0.471 sum -3.870 22.574 24.801 33.759 Atomic orbital electron populations 1.81303 1.11910 1.07073 1.07760 1.25533 0.92471 0.94256 0.94177 1.15873 0.84715 0.98377 1.04535 1.21439 0.94533 0.95998 0.94618 1.21074 0.93525 0.99220 1.00370 1.21590 1.00478 0.92275 0.93326 1.19738 0.93739 0.96915 1.03056 1.18249 0.81829 0.85410 0.80257 1.90900 1.68266 1.35419 1.42852 1.43269 1.06076 1.31896 1.49840 1.17214 0.92217 0.91788 0.90574 1.20629 0.96488 1.02436 1.01734 1.20687 0.98830 0.94781 0.93587 1.21434 0.97509 1.05423 0.99758 1.18898 0.91307 0.91974 0.86212 1.86145 1.48761 1.56378 1.31587 1.23113 0.94565 0.88247 0.94270 1.19596 0.97208 0.97071 0.90847 1.20834 1.07269 1.22030 1.06273 0.90721 1.24934 0.97233 0.94407 0.96455 1.69893 1.38303 1.28483 1.16892 0.86764 0.84413 0.78525 0.79632 1.20065 1.21177 1.18684 1.20250 1.02637 1.01184 0.94211 1.21348 0.92779 0.96034 0.92947 0.84250 0.83895 0.84643 0.75329 0.85940 0.85484 0.84819 0.92390 0.92368 0.95339 0.95819 0.92461 0.84235 0.83244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.42 18.54 41.84 0.78 -3.65 16 2 C 0.25 2.06 15.32 -22.47 -0.34 1.71 16 3 C -0.03 -0.18 5.73 -106.99 -0.61 -0.79 16 4 C -0.05 -0.14 9.75 -39.09 -0.38 -0.52 16 5 C -0.12 -0.24 10.02 -39.70 -0.40 -0.64 16 6 C -0.06 -0.18 9.54 -39.09 -0.37 -0.55 16 7 C -0.13 -0.86 5.87 -105.02 -0.62 -1.48 16 8 C 0.55 5.54 7.51 -12.34 -0.09 5.45 16 9 O -0.50 -7.31 14.02 5.31 0.07 -7.23 16 10 N -0.67 -5.56 5.28 -10.73 -0.06 -5.61 16 11 C 0.18 2.09 6.28 -83.74 -0.53 1.56 16 12 C -0.19 -1.99 9.96 -39.36 -0.39 -2.38 16 13 C -0.06 -0.69 10.03 -39.64 -0.40 -1.09 16 14 C -0.22 -3.25 9.04 -39.39 -0.36 -3.61 16 15 C 0.16 2.80 6.68 -39.24 -0.26 2.53 16 16 O -0.32 -6.34 10.13 -19.42 -0.20 -6.54 16 17 C 0.07 1.49 4.68 37.16 0.17 1.66 16 18 C -0.01 -0.24 4.41 -27.88 -0.12 -0.36 16 19 C -0.53 -14.87 9.66 -34.43 -0.33 -15.20 16 20 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 21 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 22 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 23 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 27 C -0.16 -2.52 8.59 -39.24 -0.34 -2.85 16 28 C -0.01 -0.07 9.30 -38.76 -0.36 -0.43 16 29 H 0.14 0.16 8.06 -52.49 -0.42 -0.26 16 30 H 0.14 -0.10 8.06 -52.49 -0.42 -0.52 16 31 H 0.14 0.04 6.40 -52.49 -0.34 -0.30 16 32 H 0.41 1.65 6.86 -40.82 -0.28 1.37 16 33 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 35 H 0.13 1.93 6.29 -52.49 -0.33 1.60 16 36 H 0.06 1.13 7.67 -51.93 -0.40 0.74 16 37 H 0.06 1.16 7.65 -51.93 -0.40 0.76 16 38 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 39 H 0.02 0.58 7.57 -51.93 -0.39 0.18 16 40 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.14 2.34 6.41 -52.48 -0.34 2.00 16 42 H 0.15 1.20 7.64 -52.49 -0.40 0.80 16 LS Contribution 370.20 15.07 5.58 5.58 Total: -1.00 -35.80 370.20 -8.07 -43.87 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -4.52 Total: -2.03 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -5.83 Total: -14.99 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 1.49 Total: -35.82 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.12 Total: -13.77 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.80 -8.07 -43.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055568071.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.416 kcal (2) G-P(sol) polarization free energy of solvation -35.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds