Wall clock time and date at job start Tue Mar 31 2020 05:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39762 * 120.07588 * 211.79437 * 3 2 1 5 5 C 1.38038 * 120.14261 * 179.97438 * 4 3 2 6 6 C 1.38107 * 120.30743 * 359.74579 * 5 4 3 7 7 C 1.39671 * 120.15078 * 0.50887 * 6 5 4 8 8 C 1.47835 * 120.06710 * 179.76933 * 7 6 5 9 9 O 1.21562 * 119.99745 * 179.72750 * 8 7 6 10 10 N 1.34774 * 120.00404 * 359.72443 * 8 7 6 11 11 C 1.39842 * 119.99954 * 185.28954 * 10 8 7 12 12 C 1.38958 * 120.04000 * 213.32351 * 11 10 8 13 13 C 1.38118 * 120.03506 * 180.02562 * 12 11 10 14 14 C 1.38212 * 120.12873 * 359.75331 * 13 12 11 15 15 C 1.38770 * 120.08814 * 0.50480 * 14 13 12 16 16 O 1.35897 * 120.02225 * 179.76940 * 15 14 13 17 17 C 1.42903 * 116.99773 * 359.72581 * 16 15 14 18 18 C 1.53000 * 109.46838 * 179.97438 * 17 16 15 19 19 C 1.50708 * 109.46660 * 179.97438 * 18 17 16 20 20 H 1.07995 * 120.00170 * 0.02562 * 19 18 17 21 21 C 1.37882 * 119.99580 * 179.97438 * 19 18 17 22 22 N 1.31518 * 119.99741 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99998 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47494 * 89.99951 * 23 21 19 25 25 H 1.48508 * 109.46915 * 209.99953 * 23 21 19 26 26 H 1.48497 * 109.46887 * 329.99355 * 23 21 19 27 27 C 1.38620 * 119.96090 * 359.48882 * 15 14 13 28 28 C 1.39345 * 119.85859 * 359.49090 * 7 6 5 29 29 H 1.07998 * 119.92690 * 359.96075 * 4 3 2 30 30 H 1.07999 * 119.85262 * 180.02562 * 5 4 3 31 31 H 1.07996 * 119.92208 * 180.28005 * 6 5 4 32 32 H 0.97004 * 119.99698 * 5.28732 * 10 8 7 33 33 H 1.08000 * 119.98148 * 0.04812 * 12 11 10 34 34 H 1.08006 * 119.93296 * 179.97438 * 13 12 11 35 35 H 1.08001 * 119.95978 * 180.27144 * 14 13 12 36 36 H 1.08999 * 109.46706 * 299.99612 * 17 16 15 37 37 H 1.09001 * 109.47108 * 59.99830 * 17 16 15 38 38 H 1.08999 * 109.47273 * 299.99409 * 18 17 16 39 39 H 1.09001 * 109.47292 * 60.00087 * 18 17 16 40 40 H 0.96992 * 119.99468 * 179.97438 * 22 21 19 41 41 H 1.08004 * 120.06797 * 180.22879 * 27 15 14 42 42 H 1.07998 * 120.14978 * 180.22503 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2679 1.0289 0.6372 5 6 4.6483 1.0306 0.6385 6 6 5.3471 0.0152 0.0157 7 6 4.6604 -1.0158 -0.6295 8 6 5.4102 -2.0992 -1.2999 9 8 4.8112 -2.9985 -1.8568 10 7 6.7579 -2.0898 -1.2938 11 6 7.4672 -3.0514 -2.0203 12 6 8.6866 -3.5208 -1.5475 13 6 9.3873 -4.4702 -2.2654 14 6 8.8756 -4.9595 -3.4524 15 6 7.6609 -4.4906 -3.9321 16 8 7.1613 -4.9693 -5.1018 17 6 7.9425 -5.9494 -5.7881 18 6 7.2240 -6.3658 -7.0731 19 6 8.0483 -7.3990 -7.7972 20 1 8.9900 -7.7263 -7.3821 21 6 7.5994 -7.9273 -8.9890 22 7 8.3185 -8.8294 -9.6207 23 14 5.9701 -7.3618 -9.7066 24 1 6.1992 -6.1952 -10.5963 25 1 5.3626 -8.4687 -10.4883 26 1 5.0530 -6.9721 -8.6056 27 6 6.9545 -3.5379 -3.2146 28 6 3.2669 -1.0242 -0.6348 29 1 2.7276 1.8240 1.1295 30 1 5.1845 1.8273 1.1327 31 1 6.4270 0.0203 0.0244 32 1 7.2359 -1.4159 -0.7855 33 1 9.0866 -3.1432 -0.6181 34 1 10.3352 -4.8335 -1.8966 35 1 9.4237 -5.7051 -4.0093 36 1 8.9169 -5.5287 -6.0362 37 1 8.0756 -6.8214 -5.1477 38 1 6.2498 -6.7867 -6.8246 39 1 7.0906 -5.4940 -7.7136 40 1 8.0025 -9.2012 -10.4589 41 1 6.0071 -3.1744 -3.5845 42 1 2.7312 -1.8210 -1.1291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055568071.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:24 Heat of formation + Delta-G solvation = -11.451197 kcal Electronic energy + Delta-G solvation = -25983.617288 eV Core-core repulsion = 22086.257251 eV Total energy + Delta-G solvation = -3897.360038 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.126 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.94321 -40.86458 -39.86925 -38.42319 -37.54532 -35.85954 -35.34710 -32.94384 -32.86600 -32.28218 -31.05162 -30.10591 -27.13861 -25.61537 -24.99815 -23.79716 -23.33530 -22.34664 -21.65784 -20.28731 -19.71975 -18.78474 -17.80992 -17.46961 -17.13121 -17.03308 -16.93024 -16.72522 -16.31943 -16.11154 -15.98331 -15.46409 -15.15300 -14.88631 -14.82695 -14.49585 -14.44510 -14.33069 -14.21236 -13.96464 -13.45504 -13.41993 -13.23838 -12.86613 -12.74063 -12.65132 -12.44503 -12.35380 -12.11215 -11.87472 -11.71234 -11.48715 -11.28826 -11.04376 -10.83462 -10.16280 -10.08433 -9.42359 -9.01494 -8.37065 -6.43107 -0.47591 -0.13521 0.32827 0.49624 1.32766 1.34845 1.47603 1.47750 1.53236 1.82573 2.03630 2.30762 2.36882 2.75294 2.78328 2.89211 2.97669 3.47377 3.81145 3.91316 3.98991 4.02974 4.16145 4.18414 4.21331 4.26861 4.32669 4.41650 4.51946 4.60953 4.63945 4.72400 4.84441 5.07449 5.09749 5.21355 5.24091 5.26252 5.27069 5.29125 5.41126 5.47586 5.54565 5.68878 5.90119 6.14446 6.32757 6.35610 6.52041 6.61968 7.02209 7.21904 8.78382 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.013338 B = 0.002117 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.747863 B =13222.485109 C =15095.929771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.275 3.725 3 C -0.047 4.047 4 C -0.029 4.029 5 C -0.109 4.109 6 C -0.037 4.037 7 C -0.148 4.148 8 C 0.553 3.447 9 O -0.559 6.559 10 N -0.646 5.646 11 C 0.179 3.821 12 C -0.169 4.169 13 C -0.054 4.054 14 C -0.235 4.235 15 C 0.124 3.876 16 O -0.341 6.341 17 C 0.087 3.913 18 C -0.008 4.008 19 C -0.534 4.534 20 H 0.046 0.954 21 C 0.016 3.984 22 N -0.939 5.939 23 Si 0.945 3.055 24 H -0.263 1.263 25 H -0.277 1.277 26 H -0.257 1.257 27 C -0.183 4.183 28 C -0.024 4.024 29 H 0.165 0.835 30 H 0.187 0.813 31 H 0.173 0.827 32 H 0.434 0.566 33 H 0.173 0.827 34 H 0.164 0.836 35 H 0.128 0.872 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.022 0.978 39 H 0.025 0.975 40 H 0.270 0.730 41 H 0.114 0.886 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.104 26.424 29.061 39.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.140 5.140 2 C -0.039 4.039 3 C -0.050 4.050 4 C -0.049 4.049 5 C -0.127 4.127 6 C -0.056 4.056 7 C -0.151 4.151 8 C 0.343 3.657 9 O -0.437 6.437 10 N -0.294 5.294 11 C 0.084 3.916 12 C -0.189 4.189 13 C -0.073 4.073 14 C -0.255 4.255 15 C 0.078 3.922 16 O -0.256 6.256 17 C 0.013 3.987 18 C -0.046 4.046 19 C -0.572 4.572 20 H 0.065 0.935 21 C -0.183 4.183 22 N -0.579 5.579 23 Si 0.768 3.232 24 H -0.188 1.188 25 H -0.203 1.203 26 H -0.181 1.181 27 C -0.204 4.204 28 C -0.046 4.046 29 H 0.183 0.817 30 H 0.204 0.796 31 H 0.190 0.810 32 H 0.276 0.724 33 H 0.191 0.809 34 H 0.181 0.819 35 H 0.146 0.854 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.040 0.960 39 H 0.043 0.957 40 H 0.079 0.921 41 H 0.132 0.868 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.289 25.774 28.427 38.440 hybrid contribution -0.229 -0.614 -1.061 1.247 sum -2.518 25.160 27.366 37.260 Atomic orbital electron populations 1.81311 1.13578 1.09064 1.10005 1.25950 0.92906 0.92578 0.92485 1.15895 0.83279 0.99543 1.06311 1.21834 0.95441 0.94966 0.92652 1.21557 0.92801 0.99362 0.98957 1.22000 1.02259 0.90491 0.90883 1.19489 0.93071 0.97500 1.05025 1.18847 0.82187 0.85377 0.79306 1.90884 1.69424 1.37938 1.45462 1.43128 1.05591 1.31608 1.49094 1.17350 0.92853 0.91938 0.89434 1.21148 0.94773 1.00410 1.02540 1.21145 0.99955 0.94184 0.91983 1.21541 0.96767 1.05821 1.01330 1.19198 0.93165 0.93904 0.85965 1.86043 1.49360 1.56655 1.33492 1.22693 0.94188 0.88886 0.92932 1.19461 0.96584 0.96006 0.92510 1.21085 1.06710 1.22759 1.06659 0.93543 1.25825 1.01019 0.94481 0.96953 1.70012 1.40334 1.29877 1.17645 0.85734 0.79835 0.78559 0.79047 1.18802 1.20265 1.18096 1.20249 1.02069 1.02020 0.96098 1.21186 0.93462 0.96142 0.93822 0.81705 0.79611 0.80997 0.72395 0.80932 0.81866 0.85423 0.91777 0.92319 0.95959 0.95652 0.92059 0.86779 0.85982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.65 18.54 19.00 0.35 -10.30 16 2 C 0.28 4.62 15.32 88.33 1.35 5.98 16 3 C -0.05 -0.49 5.73 -21.40 -0.12 -0.62 16 4 C -0.03 -0.07 9.75 22.59 0.22 0.15 16 5 C -0.11 0.20 10.02 22.19 0.22 0.42 16 6 C -0.04 -0.05 9.54 22.58 0.22 0.16 16 7 C -0.15 -1.70 5.87 -20.13 -0.12 -1.82 16 8 C 0.55 10.77 7.51 86.78 0.65 11.43 16 9 O -0.56 -17.49 14.02 -3.91 -0.05 -17.54 16 10 N -0.65 -9.07 5.28 -306.15 -1.62 -10.68 16 11 C 0.18 3.91 6.28 38.16 0.24 4.15 16 12 C -0.17 -2.75 9.96 22.41 0.22 -2.53 16 13 C -0.05 -1.08 10.03 22.23 0.22 -0.85 16 14 C -0.24 -6.83 9.04 22.39 0.20 -6.62 16 15 C 0.12 4.38 6.68 22.49 0.15 4.53 16 16 O -0.34 -14.47 10.13 -92.40 -0.94 -15.41 16 17 C 0.09 3.78 4.68 71.98 0.34 4.11 16 18 C -0.01 -0.41 4.41 29.85 0.13 -0.28 16 19 C -0.53 -31.24 9.66 25.60 0.25 -30.99 16 20 H 0.05 2.89 7.99 -2.91 -0.02 2.87 16 21 C 0.02 0.93 5.47 84.66 0.46 1.39 16 22 N -0.94 -58.59 13.96 21.45 0.30 -58.29 16 23 Si 0.94 45.65 27.47 68.60 1.88 47.54 16 24 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 25 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 26 H -0.26 -12.09 6.54 99.48 0.65 -11.44 16 27 C -0.18 -5.88 8.59 22.49 0.19 -5.69 16 28 C -0.02 -0.35 9.30 22.80 0.21 -0.14 16 29 H 0.17 -0.39 8.06 -2.91 -0.02 -0.41 16 30 H 0.19 -1.73 8.06 -2.91 -0.02 -1.75 16 31 H 0.17 -1.06 6.40 -2.91 -0.02 -1.08 16 32 H 0.43 1.33 6.86 -92.71 -0.64 0.70 16 33 H 0.17 1.16 8.06 -2.91 -0.02 1.13 16 34 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 35 H 0.13 3.76 6.29 -2.91 -0.02 3.74 16 36 H 0.06 2.62 7.67 -2.39 -0.02 2.60 16 37 H 0.06 2.46 7.65 -2.39 -0.02 2.44 16 38 H 0.02 1.14 7.20 -2.39 -0.02 1.12 16 39 H 0.03 1.26 7.57 -2.39 -0.02 1.24 16 40 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 41 H 0.11 4.18 6.41 -2.91 -0.02 4.16 16 42 H 0.12 2.34 7.64 -2.91 -0.02 2.32 16 Total: -1.00 -86.35 370.20 5.36 -80.99 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: 0.39 Total: 0.91 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: 5.04 Total: -17.22 kcal Atomic # 7 Polarization: -78.31 SS G_CDS: -0.97 Total: -79.27 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -0.99 Total: -32.95 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.88 Total: 47.54 kcal Total: -86.35 5.36 -80.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055568071.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.539 kcal (2) G-P(sol) polarization free energy of solvation -86.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds