Wall clock time and date at job start Tue Mar 31 2020 05:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34638 * 117.00226 * 2 1 4 4 O 1.21515 * 119.99797 * 0.02562 * 3 2 1 5 5 N 1.34779 * 120.00103 * 180.02562 * 3 2 1 6 6 C 1.46501 * 119.99761 * 0.02562 * 5 3 2 7 7 C 1.46501 * 119.99942 * 180.02562 * 5 3 2 8 8 C 1.50699 * 109.46864 * 269.99939 * 7 5 3 9 9 O 1.21288 * 119.99873 * 359.97438 * 8 7 5 10 10 N 1.34776 * 119.99874 * 180.02562 * 8 7 5 11 11 C 1.39917 * 120.00075 * 185.27630 * 10 8 7 12 12 C 1.38933 * 120.04163 * 213.30012 * 11 10 8 13 13 C 1.38126 * 120.03704 * 180.02562 * 12 11 10 14 14 C 1.38215 * 120.12639 * 359.68018 * 13 12 11 15 15 C 1.38762 * 120.08446 * 0.59353 * 14 13 12 16 16 O 1.35893 * 120.02114 * 179.69880 * 15 14 13 17 17 C 1.42897 * 117.00074 * 359.73109 * 16 15 14 18 18 C 1.53004 * 109.47092 * 179.97438 * 17 16 15 19 19 C 1.50703 * 109.46777 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00434 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99743 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00189 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00102 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46937 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46665 * 120.00218 * 23 21 19 26 26 H 1.48498 * 109.47284 * 240.00278 * 23 21 19 27 27 C 1.38631 * 119.95633 * 359.42885 * 15 14 13 28 28 H 1.09000 * 109.46897 * 59.99161 * 1 2 3 29 29 H 1.08999 * 109.47180 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46464 * 299.99906 * 1 2 3 31 31 H 1.09000 * 109.47088 * 269.99916 * 6 5 3 32 32 H 1.08997 * 109.46826 * 30.00313 * 6 5 3 33 33 H 1.08998 * 109.46809 * 150.00291 * 6 5 3 34 34 H 1.08997 * 109.46962 * 149.99942 * 7 5 3 35 35 H 1.09003 * 109.47134 * 30.00063 * 7 5 3 36 36 H 0.96997 * 120.00199 * 5.26862 * 10 8 7 37 37 H 1.08000 * 119.98133 * 0.02562 * 12 11 10 38 38 H 1.08000 * 119.93323 * 179.97438 * 13 12 11 39 39 H 1.08003 * 119.95600 * 180.30031 * 14 13 12 40 40 H 1.09001 * 109.46881 * 299.99974 * 17 16 15 41 41 H 1.08998 * 109.47261 * 59.99940 * 17 16 15 42 42 H 1.09000 * 109.46979 * 299.99300 * 18 17 16 43 43 H 1.08998 * 109.47098 * 59.99863 * 18 17 16 44 44 H 0.96994 * 120.00572 * 179.97438 * 22 21 19 45 45 H 1.07997 * 120.05730 * 180.25295 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4093 1.2701 -0.0005 6 6 4.2071 0.0414 -0.0017 7 6 4.0744 2.5754 0.0000 8 6 4.3018 3.0239 -1.4206 9 8 3.9440 2.3219 -2.3427 10 7 4.9038 4.2044 -1.6664 11 6 5.0161 4.6723 -2.9802 12 6 6.1244 5.4189 -3.3603 13 6 6.2350 5.8812 -4.6572 14 6 5.2475 5.5970 -5.5815 15 6 4.1356 4.8565 -5.2061 16 8 3.1625 4.5831 -6.1143 17 6 3.3466 5.0942 -7.4360 18 6 2.1586 4.6873 -8.3102 19 6 2.3530 5.2258 -9.7042 20 1 3.2354 5.8011 -9.9428 21 6 1.4044 4.9841 -10.6752 22 7 0.3296 4.2840 -10.3846 23 14 1.6450 5.6522 -12.4030 24 1 2.9255 6.4011 -12.4702 25 1 1.6801 4.5248 -13.3690 26 1 0.5210 6.5610 -12.7433 27 6 4.0208 4.3912 -3.9052 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 4.4054 -0.2640 1.0257 32 1 3.6583 -0.7476 -0.5158 33 1 5.1512 0.2217 -0.5157 34 1 5.0325 2.4948 0.5134 35 1 3.4466 3.3029 0.5146 36 1 5.2590 4.7298 -0.9325 37 1 6.9000 5.6380 -2.6413 38 1 7.0971 6.4618 -4.9507 39 1 5.3391 5.9557 -6.5961 40 1 3.4153 6.1814 -7.3988 41 1 4.2647 4.6863 -7.8587 42 1 2.0903 3.6001 -8.3474 43 1 1.2402 5.0948 -7.8877 44 1 -0.3379 4.1143 -11.0675 45 1 3.1581 3.8113 -3.6123 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055570267.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:52 Heat of formation + Delta-G solvation = -116.599448 kcal Electronic energy + Delta-G solvation = -28188.060421 eV Core-core repulsion = 23978.831893 eV Total energy + Delta-G solvation = -4209.228528 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.10104 -40.37995 -39.25247 -37.45656 -36.77755 -35.77289 -34.61211 -33.32321 -30.91356 -30.44380 -29.23644 -28.59114 -27.96601 -26.25371 -25.00866 -23.25700 -22.18625 -21.57530 -20.63988 -20.17084 -18.58862 -18.33226 -17.74657 -17.40408 -16.56884 -16.40188 -16.01212 -15.77742 -15.47958 -15.24465 -15.10780 -14.92821 -14.60605 -14.36737 -14.11914 -13.73047 -13.38149 -13.13587 -13.05196 -12.84761 -12.70074 -12.38749 -12.30287 -12.24003 -11.77781 -11.66626 -11.40840 -11.01129 -10.92790 -10.84729 -10.81703 -10.56146 -10.39375 -10.14381 -9.80172 -9.61938 -9.25432 -9.18793 -8.42717 -8.24125 -7.80665 -6.06927 -4.11612 1.34136 1.65050 1.69703 2.39175 2.47653 2.87620 3.28693 3.35441 3.39236 3.57330 3.85337 3.98683 4.36376 4.45933 4.51976 4.74796 4.79461 4.92377 5.00635 5.01576 5.11562 5.19103 5.28947 5.29301 5.38002 5.41745 5.46523 5.68131 5.78074 5.89634 5.94468 6.06204 6.07842 6.27590 6.37475 6.54169 6.62152 6.77555 6.85912 6.98909 7.17259 7.55318 7.68824 7.84934 7.87146 7.95744 8.10970 8.27438 8.94276 9.52458 11.04747 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.011625 B = 0.002370 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.039706 B =11810.716428 C =13817.081363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 O -0.366 6.366 3 C 0.655 3.345 4 O -0.566 6.566 5 N -0.584 5.584 6 C 0.087 3.913 7 C 0.117 3.883 8 C 0.489 3.511 9 O -0.497 6.497 10 N -0.670 5.670 11 C 0.178 3.822 12 C -0.196 4.196 13 C -0.062 4.062 14 C -0.225 4.225 15 C 0.165 3.835 16 O -0.312 6.312 17 C 0.065 3.935 18 C 0.024 3.976 19 C -0.525 4.525 20 H 0.059 0.941 21 C 0.060 3.940 22 N -0.889 5.889 23 Si 0.899 3.101 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.282 1.282 27 C -0.162 4.162 28 H 0.067 0.933 29 H 0.104 0.896 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.411 0.589 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.132 0.868 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.028 0.972 43 H 0.028 0.972 44 H 0.263 0.737 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.588 -4.917 27.531 30.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.280 6.280 3 C 0.410 3.590 4 O -0.454 6.454 5 N -0.323 5.323 6 C -0.055 4.055 7 C -0.009 4.009 8 C 0.274 3.726 9 O -0.369 6.369 10 N -0.317 5.317 11 C 0.084 3.916 12 C -0.216 4.216 13 C -0.080 4.080 14 C -0.245 4.245 15 C 0.117 3.883 16 O -0.225 6.225 17 C -0.009 4.009 18 C -0.013 4.013 19 C -0.563 4.563 20 H 0.077 0.923 21 C -0.143 4.143 22 N -0.527 5.527 23 Si 0.726 3.274 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.183 4.183 28 H 0.085 0.915 29 H 0.122 0.878 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.246 0.754 37 H 0.140 0.860 38 H 0.143 0.857 39 H 0.150 0.850 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.072 0.928 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 10.636 -5.409 26.849 29.381 hybrid contribution 0.309 0.766 -0.839 1.178 sum 10.945 -4.643 26.010 28.598 Atomic orbital electron populations 1.23254 0.74028 1.03648 1.02995 1.86223 1.24416 1.30570 1.86785 1.17952 0.82893 0.82380 0.75798 1.91023 1.64151 1.34979 1.55214 1.45986 1.02620 1.07231 1.76509 1.21823 0.96205 0.85578 1.01926 1.21269 1.00128 0.85642 0.93891 1.21401 0.77677 0.80945 0.92586 1.90816 1.47343 1.53153 1.45628 1.43399 1.59429 1.21449 1.07429 1.17255 0.93719 0.96623 0.83989 1.20600 0.97571 1.06055 0.97395 1.20661 0.97767 0.97482 0.92125 1.21389 0.96163 1.05450 1.01477 1.18956 0.87912 0.91883 0.89586 1.86199 1.42357 1.72275 1.21674 1.23352 1.02289 0.97375 0.77879 1.19138 0.91595 0.98173 0.92393 1.21008 1.06490 1.34593 0.94231 0.92295 1.25002 0.95027 0.95071 0.99161 1.69992 1.09736 1.38969 1.34029 0.86430 0.78192 0.78743 0.84008 1.19644 1.20849 1.20845 1.20272 1.00719 1.06063 0.91275 0.91468 0.87796 0.91825 0.92076 0.89971 0.90712 0.86297 0.85988 0.75363 0.86047 0.85670 0.85025 0.93031 0.93053 0.95360 0.95372 0.92769 0.84405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.47 10.56 101.05 1.07 1.54 16 2 O -0.37 -4.08 9.39 -40.32 -0.38 -4.46 16 3 C 0.66 8.36 8.39 54.06 0.45 8.81 16 4 O -0.57 -8.87 15.71 -19.28 -0.30 -9.17 16 5 N -0.58 -5.70 2.36 -188.80 -0.45 -6.14 16 6 C 0.09 0.59 10.44 59.85 0.63 1.21 16 7 C 0.12 0.87 5.89 -5.19 -0.03 0.84 16 8 C 0.49 5.68 7.63 -10.99 -0.08 5.60 16 9 O -0.50 -8.39 14.12 5.55 0.08 -8.31 16 10 N -0.67 -6.65 5.34 -9.88 -0.05 -6.70 16 11 C 0.18 2.44 6.28 -83.72 -0.53 1.92 16 12 C -0.20 -2.31 9.96 -39.37 -0.39 -2.70 16 13 C -0.06 -0.79 10.03 -39.63 -0.40 -1.19 16 14 C -0.23 -3.65 9.04 -39.40 -0.36 -4.01 16 15 C 0.16 3.15 6.68 -39.24 -0.26 2.89 16 16 O -0.31 -7.03 10.13 -19.40 -0.20 -7.23 16 17 C 0.07 1.47 4.68 37.16 0.17 1.64 16 18 C 0.02 0.66 5.34 -27.88 -0.15 0.51 16 19 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 20 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 22 N -0.89 -27.12 13.29 55.43 0.74 -26.38 16 23 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 C -0.16 -2.91 8.59 -39.25 -0.34 -3.25 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 0.63 7.37 -51.93 -0.38 0.25 16 33 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 34 H 0.12 0.33 8.07 -51.93 -0.42 -0.09 16 35 H 0.12 0.85 7.42 -51.93 -0.39 0.47 16 36 H 0.41 2.16 8.82 -40.82 -0.36 1.80 16 37 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.13 2.07 6.29 -52.48 -0.33 1.74 16 40 H 0.05 1.09 7.67 -51.93 -0.40 0.69 16 41 H 0.05 1.10 7.65 -51.93 -0.40 0.70 16 42 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 45 H 0.14 2.78 6.41 -52.49 -0.34 2.44 16 LS Contribution 388.09 15.07 5.85 5.85 Total: -1.00 -38.85 388.09 -6.71 -45.57 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -6.35 Total: 0.21 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -0.63 Total: 0.12 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.24 Total: -39.22 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -0.80 Total: -29.17 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -38.85 -6.71 -45.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055570267.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.033 kcal (2) G-P(sol) polarization free energy of solvation -38.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds