Wall clock time and date at job start Tue Mar 31 2020 05:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31370 * 1 3 3 Si 1.86800 * 119.99806 * 2 1 4 4 H 1.48503 * 109.47086 * 274.36388 * 3 2 1 5 5 H 1.48504 * 109.47177 * 34.36572 * 3 2 1 6 6 H 1.48499 * 109.47212 * 154.36281 * 3 2 1 7 7 C 1.39047 * 120.00174 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99746 * 349.85272 * 7 2 1 9 9 N 1.36866 * 120.00079 * 169.85068 * 7 2 1 10 10 C 1.34773 * 120.00413 * 300.80590 * 9 7 2 11 11 O 1.21593 * 120.00234 * 182.23077 * 10 9 7 12 12 C 1.47727 * 119.99732 * 2.22547 * 10 9 7 13 13 C 1.39666 * 120.14740 * 328.72965 * 12 10 9 14 14 C 1.37925 * 119.86448 * 179.76669 * 13 12 10 15 15 C 1.38377 * 120.16611 * 0.51028 * 14 13 12 16 16 C 1.38441 * 120.29261 * 359.73958 * 15 14 13 17 17 Br 1.89106 * 119.93490 * 180.02562 * 16 15 14 18 18 C 1.38055 * 120.13153 * 0.02562 * 16 15 14 19 19 C 1.46502 * 119.99686 * 120.79922 * 9 7 2 20 20 C 1.54262 * 110.03422 * 302.09343 * 19 9 7 21 21 C 1.54964 * 104.15886 * 95.75634 * 20 19 9 22 22 C 1.54890 * 102.77864 * 37.88580 * 21 20 19 23 23 C 1.53873 * 110.03142 * 59.31416 * 19 9 7 24 24 H 0.96997 * 119.99968 * 0.02562 * 1 2 3 25 25 H 1.08003 * 120.06684 * 0.02562 * 13 12 10 26 26 H 1.08007 * 119.91394 * 180.22805 * 14 13 12 27 27 H 1.07994 * 119.85156 * 179.72270 * 15 14 13 28 28 H 1.08003 * 120.07801 * 180.02562 * 18 16 15 29 29 H 1.09003 * 110.01578 * 180.70081 * 19 9 7 30 30 H 1.09008 * 110.48643 * 214.40138 * 20 19 9 31 31 H 1.08997 * 110.48881 * 337.04306 * 20 19 9 32 32 H 1.08997 * 110.72217 * 279.57001 * 21 20 19 33 33 H 1.09003 * 110.92219 * 156.29810 * 21 20 19 34 34 H 1.08999 * 110.48377 * 203.40472 * 22 21 20 35 35 H 1.09003 * 110.59450 * 80.81743 * 22 21 20 36 36 H 1.08995 * 110.03448 * 359.94911 * 23 19 9 37 37 H 1.08999 * 110.03243 * 121.33430 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 2.4029 2.0997 -1.3960 5 1 1.4942 2.6243 0.7903 6 1 3.5883 1.4154 0.6058 7 6 2.0090 -1.2042 -0.0005 8 1 1.4816 -2.1322 0.1638 9 7 3.3616 -1.2133 -0.2094 10 6 3.8706 -0.7103 -1.3515 11 8 5.0685 -0.7552 -1.5548 12 6 2.9730 -0.1045 -2.3563 13 6 1.6668 -0.5760 -2.5050 14 6 0.8322 -0.0029 -3.4416 15 6 1.2893 1.0301 -4.2408 16 6 2.5844 1.4992 -4.1027 17 35 3.1984 2.9120 -5.1996 18 6 3.4287 0.9378 -3.1657 19 6 4.2561 -1.7698 0.8086 20 6 4.0604 -1.0278 2.1468 21 6 3.0610 -1.9160 2.9301 22 6 3.5104 -3.3501 2.5551 23 6 3.9063 -3.2457 1.0678 24 1 -0.4850 0.8400 -0.0004 25 1 1.3096 -1.3850 -1.8848 26 1 -0.1793 -0.3645 -3.5547 27 1 0.6329 1.4721 -4.9756 28 1 4.4388 1.3047 -3.0584 29 1 5.2925 -1.6836 0.4820 30 1 5.0062 -0.9533 2.6836 31 1 3.6388 -0.0373 1.9757 32 1 2.0392 -1.7322 2.5980 33 1 3.1521 -1.7509 4.0037 34 1 2.6873 -4.0533 2.6824 35 1 4.3667 -3.6534 3.1574 36 1 3.0704 -3.5476 0.4368 37 1 4.7726 -3.8757 0.8662 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057637903.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:53 Heat of formation + Delta-G solvation = 3.324962 kcal Electronic energy + Delta-G solvation = -22190.899781 eV Core-core repulsion = 18979.601289 eV Total energy + Delta-G solvation = -3211.298493 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 337.042 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.92613 -38.16259 -36.64090 -34.37831 -31.99796 -31.67673 -30.63411 -28.75833 -28.09472 -27.26265 -24.84383 -23.12562 -21.67217 -20.32791 -19.85331 -19.20491 -17.52167 -16.05580 -15.97598 -15.62994 -14.76272 -14.51242 -14.35411 -14.18507 -13.61321 -13.40861 -13.25811 -12.84829 -12.72960 -12.42199 -12.05361 -11.33790 -11.25022 -11.05661 -10.96523 -10.75411 -10.57840 -10.55482 -10.49706 -10.19362 -10.10547 -10.03264 -9.89291 -9.84690 -9.23176 -8.81075 -8.28162 -7.99226 -7.59253 -6.58902 -4.39361 1.49096 1.79154 1.96929 3.11447 3.23696 3.29109 3.56624 4.08094 4.21122 4.50489 4.75647 5.22866 5.30315 5.33565 5.37029 5.52023 5.74624 5.90217 5.99676 6.00454 6.17834 6.19045 6.22485 6.27451 6.27847 6.38388 6.42258 6.50617 6.57017 6.63209 6.87456 6.90591 7.05624 7.06161 7.10398 7.42728 7.58600 7.71718 8.29517 8.85476 9.10906 9.56936 10.46237 Molecular weight = 337.04amu Principal moments of inertia in cm(-1) A = 0.021919 B = 0.004600 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.141065 B = 6085.194663 C = 6429.798218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.090 3.910 3 Si 0.836 3.164 4 H -0.247 1.247 5 H -0.287 1.287 6 H -0.258 1.258 7 C -0.351 4.351 8 H 0.105 0.895 9 N -0.455 5.455 10 C 0.529 3.471 11 O -0.587 6.587 12 C -0.117 4.117 13 C -0.018 4.018 14 C -0.136 4.136 15 C -0.080 4.080 16 C -0.116 4.116 17 Br -0.074 7.074 18 C -0.045 4.045 19 C 0.131 3.869 20 C -0.126 4.126 21 C -0.117 4.117 22 C -0.117 4.117 23 C -0.124 4.124 24 H 0.277 0.723 25 H 0.176 0.824 26 H 0.129 0.871 27 H 0.123 0.877 28 H 0.128 0.872 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.075 0.925 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.358 1.096 -4.233 4.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.120 4.120 3 Si 0.661 3.339 4 H -0.171 1.171 5 H -0.213 1.213 6 H -0.182 1.182 7 C -0.478 4.478 8 H 0.122 0.878 9 N -0.175 5.175 10 C 0.319 3.681 11 O -0.472 6.472 12 C -0.121 4.121 13 C -0.036 4.036 14 C -0.155 4.155 15 C -0.100 4.100 16 C -0.195 4.195 17 Br 0.011 6.989 18 C -0.066 4.066 19 C 0.027 3.973 20 C -0.165 4.165 21 C -0.155 4.155 22 C -0.155 4.155 23 C -0.162 4.162 24 H 0.088 0.912 25 H 0.193 0.807 26 H 0.147 0.853 27 H 0.141 0.859 28 H 0.146 0.854 29 H 0.100 0.900 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.994 1.684 -4.706 5.381 hybrid contribution 0.051 0.898 0.447 1.004 sum 2.045 2.582 -4.259 5.384 Atomic orbital electron populations 1.69611 1.05909 1.28412 1.44696 1.25598 0.95171 0.98019 0.93162 0.87494 0.81231 0.84268 0.80895 1.17113 1.21327 1.18235 1.18767 0.80113 0.94981 1.53939 0.87772 1.43573 1.06945 1.54325 1.12703 1.18506 0.87023 0.80413 0.82138 1.90632 1.15850 1.61898 1.78809 1.19842 0.95748 0.98338 0.98208 1.22528 0.90568 0.98824 0.91676 1.21157 1.00487 0.97446 0.96409 1.21137 0.93371 0.96586 0.98889 1.21340 0.97189 0.99402 1.01539 1.96565 1.89483 1.46247 1.66641 1.20989 0.98866 0.94180 0.92548 1.21686 0.94638 0.92401 0.88560 1.22619 0.98295 1.00042 0.95497 1.22480 1.01094 0.94074 0.97826 1.22255 0.99716 0.97491 0.95995 1.22395 1.01066 0.96107 0.96646 0.91207 0.80699 0.85288 0.85881 0.85393 0.89996 0.92565 0.91143 0.89603 0.93190 0.92303 0.92800 0.90607 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -20.68 13.88 55.50 0.77 -19.91 16 2 C 0.09 2.13 3.13 -17.45 -0.05 2.08 16 3 Si 0.84 19.61 23.42 -169.99 -3.98 15.63 16 4 H -0.25 -5.77 4.99 56.52 0.28 -5.49 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.26 -6.29 6.06 56.52 0.34 -5.95 16 7 C -0.35 -7.97 4.42 -15.00 -0.07 -8.04 16 8 H 0.10 2.49 7.43 -52.49 -0.39 2.10 16 9 N -0.46 -10.15 1.73 -107.65 -0.19 -10.33 16 10 C 0.53 12.48 5.96 -12.38 -0.07 12.40 16 11 O -0.59 -14.93 16.09 5.28 0.08 -14.85 16 12 C -0.12 -2.57 3.08 -104.97 -0.32 -2.89 16 13 C -0.02 -0.36 6.57 -39.16 -0.26 -0.62 16 14 C -0.14 -2.44 10.03 -39.65 -0.40 -2.84 16 15 C -0.08 -1.36 9.78 -39.46 -0.39 -1.75 16 16 C -0.12 -2.13 6.14 -39.57 -0.24 -2.37 16 17 Br -0.07 -1.16 33.69 -68.01 -2.29 -3.45 16 18 C -0.04 -0.93 7.50 -39.14 -0.29 -1.22 16 19 C 0.13 2.62 3.35 -66.81 -0.22 2.39 16 20 C -0.13 -2.37 6.10 -25.03 -0.15 -2.52 16 21 C -0.12 -1.98 6.56 -24.70 -0.16 -2.14 16 22 C -0.12 -1.77 6.83 -25.07 -0.17 -1.95 16 23 C -0.12 -2.13 6.27 -25.62 -0.16 -2.29 16 24 H 0.28 6.57 8.31 -40.82 -0.34 6.23 16 25 H 0.18 3.78 5.31 -52.48 -0.28 3.51 16 26 H 0.13 2.03 8.06 -52.48 -0.42 1.61 16 27 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 28 H 0.13 2.66 7.94 -52.48 -0.42 2.24 16 29 H 0.08 1.72 6.94 -51.93 -0.36 1.36 16 30 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 31 H 0.07 1.49 5.50 -51.93 -0.29 1.21 16 32 H 0.09 1.65 7.26 -51.93 -0.38 1.27 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.08 1.39 6.94 -51.93 -0.36 1.03 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 305.15 15.07 4.60 4.60 Total: -1.00 -25.38 305.15 -8.71 -34.09 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -4.74 Total: 5.97 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -2.97 Total: -11.75 kcal Atomic # 7 Polarization: -30.83 SS G_CDS: 0.58 Total: -30.24 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: 0.08 Total: -14.85 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -3.98 Total: 15.63 kcal Atomic # 35 Polarization: -1.16 SS G_CDS: -2.29 Total: -3.45 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -25.38 -8.71 -34.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057637903.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.420 kcal (2) G-P(sol) polarization free energy of solvation -25.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds