Wall clock time and date at job start Tue Mar 31 2020 05:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47068 * 2 1 4 4 N 1.46499 * 109.47337 * 119.99717 * 2 1 3 5 5 C 1.46504 * 120.00175 * 304.76983 * 4 2 1 6 6 C 1.50702 * 109.46978 * 262.24205 * 5 4 2 7 7 H 1.08011 * 119.99874 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00228 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00073 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00229 * 0.02562 * 8 6 5 11 11 H 1.48492 * 109.47207 * 89.99753 * 10 8 6 12 12 H 1.48503 * 109.47299 * 210.00342 * 10 8 6 13 13 H 1.48511 * 109.46789 * 329.99675 * 10 8 6 14 14 C 1.34776 * 120.00107 * 124.76151 * 4 2 1 15 15 O 1.21666 * 119.99954 * 1.84826 * 14 4 2 16 16 C 1.46828 * 120.00231 * 181.84569 * 14 4 2 17 17 S 1.75481 * 124.65845 * 351.64107 * 16 14 4 18 18 C 1.75994 * 91.64697 * 180.02562 * 17 16 14 19 19 C 1.39904 * 130.55894 * 179.97438 * 18 17 16 20 20 C 1.37394 * 120.18181 * 179.71284 * 19 18 17 21 21 C 1.38967 * 120.18588 * 0.02562 * 20 19 18 22 22 C 1.35926 * 120.68161 * 359.97438 * 21 20 19 23 23 C 1.40020 * 109.58805 * 359.70306 * 18 17 16 24 24 C 1.33830 * 124.66374 * 171.38093 * 16 14 4 25 25 Cl 1.73601 * 122.23766 * 359.97438 * 24 16 14 26 26 H 1.09005 * 109.47325 * 299.99733 * 1 2 3 27 27 H 1.08990 * 109.47438 * 60.00093 * 1 2 3 28 28 H 1.09001 * 109.46861 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47407 * 240.00013 * 2 1 3 30 30 H 1.08997 * 109.47046 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47010 * 300.00217 * 3 2 1 32 32 H 1.09005 * 109.46829 * 59.99963 * 3 2 1 33 33 H 1.09004 * 109.47347 * 22.23650 * 5 4 2 34 34 H 1.08994 * 109.47709 * 142.24393 * 5 4 2 35 35 H 0.97005 * 119.99646 * 179.97438 * 9 8 6 36 36 H 1.07997 * 119.90185 * 359.69554 * 19 18 17 37 37 H 1.08000 * 119.90277 * 179.97438 * 20 19 18 38 38 H 1.07999 * 119.65617 * 179.97438 * 21 20 19 39 39 H 1.08003 * 119.74570 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.5804 -0.2538 2.5243 6 6 2.6275 0.6466 3.1276 7 1 3.5289 0.8714 2.5766 8 6 2.4345 1.1842 4.3824 9 7 3.3481 1.9704 4.9086 10 14 0.8753 0.7960 5.3351 11 1 1.0894 -0.4195 6.1607 12 1 0.5367 1.9410 6.2181 13 1 -0.2399 0.5581 4.3836 14 6 2.8705 -1.7277 1.0749 15 8 3.2604 -2.0691 -0.0259 16 6 3.3282 -2.4456 2.2711 17 16 3.0164 -1.9360 3.9211 18 6 3.8910 -3.3197 4.5675 19 6 4.1393 -3.7019 5.8902 20 6 4.8533 -4.8452 6.1564 21 6 5.3332 -5.6281 5.1134 22 6 5.1044 -5.2768 3.8204 23 6 4.3718 -4.1055 3.5130 24 6 4.0363 -3.5811 2.2530 25 17 4.5064 -4.3558 0.7723 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 0.6403 0.2907 2.4361 34 1 1.4375 -1.1244 3.1643 35 1 3.2120 2.3489 5.7914 36 1 3.7690 -3.0964 6.7042 37 1 5.0427 -5.1358 7.1792 38 1 5.8938 -6.5248 5.3324 39 1 5.4840 -5.8966 3.0215 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058162920.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:38 Heat of formation + Delta-G solvation = 11.442459 kcal Electronic energy + Delta-G solvation = -25010.179693 eV Core-core repulsion = 21456.413759 eV Total energy + Delta-G solvation = -3553.765935 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 337.064 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.64654 -39.10875 -36.46986 -35.84041 -34.31469 -33.31029 -31.83308 -30.71175 -28.98826 -28.20018 -26.78972 -24.33530 -23.01271 -22.86697 -21.51139 -19.84639 -18.59889 -17.80467 -17.31379 -16.66048 -15.93275 -15.52276 -14.87790 -14.79648 -14.42657 -14.06890 -13.67660 -13.57328 -13.53675 -13.40428 -13.04237 -12.82896 -12.56579 -12.33156 -11.98176 -11.76909 -11.69858 -11.61453 -11.20968 -11.07714 -11.01167 -10.93869 -10.53268 -10.41547 -10.32830 -10.28973 -9.81563 -9.54346 -9.27179 -9.22010 -8.95185 -8.21257 -7.96208 -7.13033 -6.46934 -4.40984 0.66473 1.54980 1.81827 2.21633 2.39655 2.97066 3.03840 3.07663 3.13294 3.55156 3.67003 3.98343 4.02765 4.81049 4.85074 5.06204 5.10982 5.26254 5.42212 5.51411 5.56810 5.65395 5.71698 5.87776 5.95500 5.98721 6.01784 6.12973 6.19546 6.22054 6.24933 6.42095 6.52425 6.55943 6.62243 6.68085 6.87286 7.08001 7.09953 7.18057 7.88351 8.12773 8.59446 8.72665 9.06964 10.63511 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.010700 B = 0.006581 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.164893 B = 4253.557863 C = 6320.253519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 C -0.155 4.155 4 N -0.583 5.583 5 C 0.192 3.808 6 C -0.528 4.528 7 H 0.090 0.910 8 C 0.091 3.909 9 N -0.866 5.866 10 Si 0.842 3.158 11 H -0.262 1.262 12 H -0.274 1.274 13 H -0.258 1.258 14 C 0.586 3.414 15 O -0.536 6.536 16 C -0.228 4.228 17 S 0.323 5.677 18 C -0.210 4.210 19 C -0.080 4.080 20 C -0.107 4.107 21 C -0.132 4.132 22 C -0.071 4.071 23 C -0.085 4.085 24 C 0.008 3.992 25 Cl -0.039 7.039 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.093 0.907 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.031 0.969 35 H 0.272 0.728 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.429 -8.972 -0.169 9.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 C -0.213 4.213 4 N -0.314 5.314 5 C 0.068 3.932 6 C -0.571 4.571 7 H 0.108 0.892 8 C -0.117 4.117 9 N -0.501 5.501 10 Si 0.666 3.334 11 H -0.187 1.187 12 H -0.199 1.199 13 H -0.182 1.182 14 C 0.374 3.626 15 O -0.416 6.416 16 C -0.349 4.349 17 S 0.602 5.398 18 C -0.325 4.325 19 C -0.102 4.102 20 C -0.130 4.130 21 C -0.152 4.152 22 C -0.091 4.091 23 C -0.094 4.094 24 C -0.036 4.036 25 Cl -0.011 7.011 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.111 0.889 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.048 0.952 35 H 0.082 0.918 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.942 -7.847 -0.080 8.380 hybrid contribution 0.152 -1.202 0.098 1.216 sum -2.790 -9.049 0.018 9.469 Atomic orbital electron populations 1.22162 0.95490 1.01920 1.02328 1.20939 0.93461 0.93677 0.88312 1.22091 1.01872 0.95287 1.02014 1.47805 1.44804 1.30603 1.08170 1.20124 0.98324 0.95193 0.79609 1.21412 1.05537 1.27996 1.02201 0.89163 1.24805 0.95990 0.94034 0.96881 1.69856 1.33498 1.29856 1.16916 0.87300 0.84767 0.79726 0.81568 1.18669 1.19933 1.18166 1.16882 0.78931 0.79966 0.86852 1.90774 1.57226 1.67464 1.26097 1.23768 1.09756 1.00617 1.00715 1.86934 1.48254 1.13394 0.91252 1.24805 1.06574 1.03942 0.97192 1.20457 0.99117 0.96948 0.93667 1.21027 0.97993 0.94972 0.98967 1.20522 1.01866 1.00402 0.92454 1.20729 0.96845 0.94578 0.96961 1.17694 1.03722 0.97857 0.90080 1.19603 1.01559 0.94852 0.87570 1.98340 1.90497 1.79809 1.32414 0.91834 0.91743 0.92707 0.88864 0.92410 0.92863 0.90749 0.92677 0.95224 0.91788 0.85839 0.85851 0.86053 0.86044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.10 37.16 0.34 -1.96 16 2 C 0.14 2.40 3.24 -67.93 -0.22 2.18 16 3 C -0.15 -2.59 8.95 37.16 0.33 -2.26 16 4 N -0.58 -11.71 2.38 -168.95 -0.40 -12.11 16 5 C 0.19 3.97 3.14 -5.19 -0.02 3.95 16 6 C -0.53 -12.53 6.61 -34.44 -0.23 -12.75 16 7 H 0.09 2.45 8.06 -52.48 -0.42 2.03 16 8 C 0.09 2.20 5.05 -17.82 -0.09 2.11 16 9 N -0.87 -22.82 13.96 55.43 0.77 -22.05 16 10 Si 0.84 17.69 26.76 -169.99 -4.55 13.14 16 11 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 12 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 13 H -0.26 -5.10 6.54 56.52 0.37 -4.73 16 14 C 0.59 12.64 7.55 -12.79 -0.10 12.54 16 15 O -0.54 -12.15 14.14 5.22 0.07 -12.07 16 16 C -0.23 -4.76 6.12 -37.66 -0.23 -4.99 16 17 S 0.32 6.53 15.14 -107.50 -1.63 4.90 16 18 C -0.21 -3.87 6.50 -38.29 -0.25 -4.11 16 19 C -0.08 -1.26 10.07 -39.27 -0.40 -1.66 16 20 C -0.11 -1.42 10.03 -39.62 -0.40 -1.82 16 21 C -0.13 -1.72 9.94 -40.14 -0.40 -2.12 16 22 C -0.07 -1.08 9.77 -39.16 -0.38 -1.46 16 23 C -0.08 -1.54 5.86 -107.11 -0.63 -2.17 16 24 C 0.01 0.16 6.33 -40.26 -0.25 -0.10 16 25 Cl -0.04 -0.72 26.53 -51.86 -1.38 -2.10 16 26 H 0.06 0.93 6.50 -51.93 -0.34 0.59 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.09 1.65 6.92 -51.93 -0.36 1.29 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.35 7.35 -51.93 -0.38 0.97 16 33 H 0.06 1.10 5.26 -51.93 -0.27 0.83 16 34 H 0.03 0.63 3.95 -21.92 -0.09 0.55 16 35 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 36 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.12 1.63 7.91 -52.48 -0.42 1.21 16 LS Contribution 338.91 15.07 5.11 5.11 Total: -1.00 -27.09 338.91 -9.32 -36.41 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -4.40 Total: 3.39 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -2.92 Total: -14.62 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: 0.37 Total: -34.16 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.07 Total: -12.07 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -4.55 Total: 13.14 kcal Atomic # 16 Polarization: 6.53 SS G_CDS: -1.63 Total: 4.90 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.38 Total: -2.10 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.09 -9.32 -36.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058162920.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.853 kcal (2) G-P(sol) polarization free energy of solvation -27.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds